Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46906 * 109.47204 * 2 1 4 4 C 1.46902 * 110.99944 * 161.04865 * 3 2 1 5 5 C 1.52991 * 109.47218 * 288.11289 * 4 3 2 6 6 C 1.46900 * 110.99735 * 285.00476 * 3 2 1 7 7 H 1.09000 * 109.47210 * 54.99857 * 6 3 2 8 8 C 1.52996 * 109.47087 * 294.99742 * 6 3 2 9 9 C 1.53007 * 109.47239 * 180.02562 * 8 6 3 10 10 C 1.52995 * 109.46904 * 59.99760 * 9 8 6 11 11 C 1.52996 * 109.47368 * 300.00160 * 10 9 8 12 12 C 1.53000 * 109.46918 * 174.99976 * 6 3 2 13 13 H 1.09000 * 109.47277 * 59.99923 * 12 6 3 14 14 C 1.50701 * 109.47056 * 300.00002 * 12 6 3 15 15 H 1.08000 * 120.00108 * 333.61191 * 14 12 6 16 16 C 1.37875 * 120.00291 * 153.61451 * 14 12 6 17 17 N 1.31519 * 119.99600 * 7.06459 * 16 14 12 18 18 Si 1.86792 * 120.00404 * 187.06797 * 16 14 12 19 19 H 1.48503 * 109.47349 * 179.97438 * 18 16 14 20 20 H 1.48508 * 109.47080 * 299.99911 * 18 16 14 21 21 H 1.48503 * 109.47039 * 59.99857 * 18 16 14 22 22 H 1.09000 * 109.47253 * 185.97279 * 1 2 3 23 23 H 1.08995 * 109.47368 * 305.97869 * 1 2 3 24 24 H 1.09000 * 109.47122 * 65.97569 * 1 2 3 25 25 H 1.09002 * 109.47402 * 240.00253 * 2 1 3 26 26 H 1.09004 * 109.47524 * 119.99905 * 2 1 3 27 27 H 1.09003 * 109.47087 * 48.11611 * 4 3 2 28 28 H 1.08998 * 109.46535 * 168.10888 * 4 3 2 29 29 H 1.09006 * 109.47406 * 186.83945 * 5 4 3 30 30 H 1.09006 * 109.47453 * 306.83547 * 5 4 3 31 31 H 1.09000 * 109.47377 * 66.83834 * 5 4 3 32 32 H 1.08999 * 109.47242 * 60.00428 * 8 6 3 33 33 H 1.09000 * 109.47190 * 300.00127 * 8 6 3 34 34 H 1.09000 * 109.46858 * 299.99993 * 9 8 6 35 35 H 1.08998 * 109.47282 * 179.97438 * 9 8 6 36 36 H 1.09008 * 109.46947 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47173 * 60.00426 * 10 9 8 38 38 H 1.09002 * 109.47588 * 299.99903 * 11 10 9 39 39 H 1.08999 * 109.47242 * 179.97438 * 11 10 9 40 40 H 0.96997 * 120.00464 * 355.17813 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4181 1.4490 0.4454 5 6 3.4875 1.1742 1.9488 6 6 1.8604 1.9997 -1.3247 7 1 0.8194 1.9221 -1.6384 8 6 2.7526 1.2744 -2.3340 9 6 2.5872 1.9150 -3.7137 10 6 2.9906 3.3891 -3.6431 11 6 2.0984 4.1143 -2.6338 12 6 2.2635 3.4739 -1.2546 13 1 3.3045 3.5515 -0.9409 14 6 1.3847 4.1883 -0.2604 15 1 0.3922 3.8168 -0.0522 16 6 1.8476 5.3162 0.3834 17 7 2.9972 5.8491 0.0312 18 14 0.8422 6.0872 1.7559 19 1 1.5540 7.2800 2.2811 20 1 -0.4850 6.4945 1.2286 21 1 0.6584 5.0997 2.8497 22 1 -0.3634 -1.0221 0.1069 23 1 -0.3634 0.6037 0.8316 24 1 -0.3633 0.4184 -0.9386 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0039 0.7005 -0.0882 28 1 3.8203 2.4406 0.2382 29 1 4.5053 1.3405 2.3020 30 1 2.8070 1.8455 2.4728 31 1 3.1998 0.1410 2.1431 32 1 2.4654 0.2241 -2.3840 33 1 3.7936 1.3520 -2.0203 34 1 1.5462 1.8378 -4.0276 35 1 3.2232 1.3986 -4.4326 36 1 2.8723 3.8456 -4.6259 37 1 4.0315 3.4663 -3.3292 38 1 1.0574 4.0372 -2.9477 39 1 2.3861 5.1645 -2.5832 40 1 3.5523 5.4103 -0.6322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = -38.078412 kcal Electronic energy + Delta-G solvation = -17231.300456 eV Core-core repulsion = 14851.224618 eV Total energy + Delta-G solvation = -2380.075837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60634 -37.15824 -34.96856 -32.67642 -31.50741 -31.10762 -28.30430 -26.10498 -24.11936 -23.69453 -22.74327 -21.36771 -19.87412 -18.72679 -16.95992 -16.23689 -15.64402 -15.61369 -15.41340 -15.24357 -14.83973 -14.79549 -13.86523 -13.48917 -13.36232 -13.12101 -12.93739 -12.82543 -12.60810 -12.41499 -12.38428 -12.14096 -12.04565 -11.94314 -11.69299 -11.63293 -11.32883 -11.19132 -10.64893 -10.42094 -10.14482 -8.79371 -8.40176 -6.03682 1.54327 1.62465 1.80229 2.65938 3.16457 3.41196 3.85447 4.01743 4.10627 4.18172 4.25625 4.37404 4.44463 4.46823 4.62733 4.64604 4.66186 4.71943 4.81349 4.84854 4.85142 4.95066 5.04446 5.05988 5.15911 5.21158 5.23177 5.28774 5.34486 5.39200 5.43302 5.49940 5.68332 5.78058 6.30630 6.45005 6.50565 6.59074 6.90552 7.68851 8.99660 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.012847 C = 0.009623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.539159 B = 2178.978106 C = 2908.882160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.058 3.942 5 C -0.135 4.135 6 C 0.110 3.890 7 H 0.056 0.944 8 C -0.146 4.146 9 C -0.102 4.102 10 C -0.116 4.116 11 C -0.104 4.104 12 C 0.040 3.960 13 H 0.006 0.994 14 C -0.553 4.553 15 H 0.032 0.968 16 C -0.034 4.034 17 N -0.950 5.950 18 Si 1.101 2.899 19 H -0.291 1.291 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.021 0.979 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 -12.231 -2.868 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 N -0.254 5.254 4 C -0.070 4.070 5 C -0.193 4.193 6 C 0.001 3.999 7 H 0.074 0.926 8 C -0.185 4.185 9 C -0.140 4.140 10 C -0.153 4.153 11 C -0.143 4.143 12 C 0.021 3.979 13 H 0.024 0.976 14 C -0.591 4.591 15 H 0.051 0.949 16 C -0.230 4.230 17 N -0.590 5.590 18 Si 0.926 3.074 19 H -0.217 1.217 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.096 0.904 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.348 -10.695 -1.459 10.878 hybrid contribution 0.645 -1.169 -1.533 2.033 sum -0.703 -11.864 -2.992 12.255 Atomic orbital electron populations 1.21683 0.94981 1.01628 1.01207 1.22235 0.96414 0.88988 1.00855 1.62083 1.19473 1.17111 1.26740 1.21920 0.89163 0.99520 0.96399 1.21687 1.01217 1.01448 0.94914 1.21517 0.97556 0.94440 0.86375 0.92573 1.22208 0.99910 0.99789 0.96642 1.21382 1.01625 0.94729 0.96311 1.21566 0.98694 0.96394 0.98660 1.21582 0.97999 0.97906 0.96799 1.18868 0.95202 0.91561 0.92248 0.97615 1.21992 1.01272 1.12115 1.23764 0.94924 1.26758 0.98527 0.96183 1.01550 1.70917 1.13807 1.39833 1.34478 0.83112 0.74435 0.75399 0.74409 1.21680 1.20314 1.20398 0.90411 0.93633 0.94034 0.94217 0.90431 0.94795 0.93763 0.91959 0.94060 0.91405 0.91096 0.93267 0.91905 0.90437 0.91577 0.93711 0.94103 0.96036 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.19 16 2 C 0.04 1.28 5.42 86.30 0.47 1.75 16 3 N -0.53 -20.46 3.96 -870.99 -3.45 -23.91 16 4 C 0.06 2.17 4.59 86.30 0.40 2.57 16 5 C -0.14 -4.46 9.86 71.98 0.71 -3.75 16 6 C 0.11 4.41 1.57 44.91 0.07 4.49 16 7 H 0.06 2.37 6.81 -2.39 -0.02 2.35 16 8 C -0.15 -4.83 4.58 30.60 0.14 -4.69 16 9 C -0.10 -3.10 5.92 30.59 0.18 -2.92 16 10 C -0.12 -4.13 5.92 30.59 0.18 -3.95 16 11 C -0.10 -4.73 5.10 30.58 0.16 -4.57 16 12 C 0.04 1.95 0.97 -11.55 -0.01 1.94 16 13 H 0.01 0.32 4.92 -2.39 -0.01 0.31 16 14 C -0.55 -30.92 7.90 25.60 0.20 -30.72 16 15 H 0.03 1.88 7.82 -2.91 -0.02 1.85 16 16 C -0.03 -1.96 5.45 84.65 0.46 -1.50 16 17 N -0.95 -58.75 13.63 21.45 0.29 -58.46 16 18 Si 1.10 52.80 29.91 68.60 2.05 54.85 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.24 7.03 -2.39 -0.02 1.22 16 25 H 0.04 1.10 5.90 -2.39 -0.01 1.09 16 26 H 0.08 2.11 6.35 -2.39 -0.02 2.10 16 27 H 0.03 1.13 7.14 -2.39 -0.02 1.12 16 28 H 0.04 2.02 5.68 -2.39 -0.01 2.01 16 29 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.86 6.76 -2.39 -0.02 1.84 16 32 H 0.07 2.04 6.26 -2.39 -0.01 2.03 16 33 H 0.05 1.69 6.76 -2.39 -0.02 1.68 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.02 1.08 7.78 -2.39 -0.02 1.06 16 40 H 0.25 15.87 6.36 -92.71 -0.59 15.28 16 Total: -1.00 -63.27 294.86 3.73 -59.55 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.16 Total: 12.51 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 3.67 Total: -44.54 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.16 Total: -82.37 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.05 Total: 54.85 kcal Total: -63.27 3.73 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.469 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds