Wall clock time and date at job start Mon Mar 30 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46974 * 2 1 4 4 C 1.46895 * 111.00368 * 66.04743 * 3 2 1 5 5 C 1.52998 * 109.47077 * 67.86889 * 4 3 2 6 6 C 1.46908 * 110.99824 * 190.00197 * 3 2 1 7 7 H 1.08998 * 109.46934 * 302.28820 * 6 3 2 8 8 C 1.53005 * 109.47238 * 62.29208 * 6 3 2 9 9 C 1.53000 * 109.47029 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.46809 * 299.99695 * 9 8 6 11 11 C 1.53004 * 109.47395 * 60.00131 * 10 9 8 12 12 C 1.53000 * 109.47076 * 300.00125 * 11 10 9 13 13 H 1.09002 * 109.47047 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47058 * 299.99841 * 12 11 10 15 15 H 1.07991 * 120.00253 * 120.00010 * 14 12 11 16 16 C 1.37880 * 119.99703 * 300.00112 * 14 12 11 17 17 N 1.31512 * 120.00050 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99828 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47184 * 60.00247 * 18 16 14 20 20 H 1.48503 * 109.47139 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47582 * 300.00192 * 18 16 14 22 22 H 1.09007 * 109.46999 * 299.99935 * 1 2 3 23 23 H 1.09000 * 109.47377 * 60.00062 * 1 2 3 24 24 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47240 * 240.00075 * 2 1 3 26 26 H 1.09005 * 109.47360 * 119.99455 * 2 1 3 27 27 H 1.09000 * 109.47400 * 187.87216 * 4 3 2 28 28 H 1.09000 * 109.47015 * 307.86958 * 4 3 2 29 29 H 1.08998 * 109.47567 * 305.09743 * 5 4 3 30 30 H 1.09003 * 109.47417 * 65.10031 * 5 4 3 31 31 H 1.09004 * 109.46941 * 185.09532 * 5 4 3 32 32 H 1.08998 * 109.46771 * 59.99692 * 8 6 3 33 33 H 1.09002 * 109.46488 * 300.00121 * 8 6 3 34 34 H 1.08998 * 109.47215 * 59.99567 * 9 8 6 35 35 H 1.09002 * 109.47006 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46952 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47128 * 299.99925 * 10 9 8 38 38 H 1.09003 * 109.46604 * 59.99342 * 11 10 9 39 39 H 1.08991 * 109.47260 * 179.97438 * 11 10 9 40 40 H 0.97006 * 120.00068 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 2.4566 1.4448 2.4088 6 6 3.4685 1.4311 -0.2382 7 1 3.9809 0.8445 0.5243 8 6 3.7769 0.8518 -1.6204 9 6 5.2859 0.8993 -1.8681 10 6 5.7678 2.3500 -1.8041 11 6 5.4594 2.9295 -0.4220 12 6 3.9504 2.8819 -0.1742 13 1 3.7308 3.2942 0.8106 14 6 3.2424 3.6933 -1.2284 15 1 2.5209 3.2216 -1.8790 16 6 3.5158 5.0381 -1.3624 17 7 4.3940 5.6127 -0.5699 18 14 2.6387 6.0438 -2.6696 19 1 1.1739 5.9977 -2.4297 20 1 3.1059 7.4520 -2.6070 21 1 2.9385 5.4814 -4.0109 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.9189 3.1252 1.1727 28 1 0.6020 1.9581 1.4405 29 1 2.2777 0.3699 2.4329 30 1 3.5208 1.6329 2.2670 31 1 2.1315 1.8884 3.3499 32 1 3.2644 1.4385 -2.3827 33 1 3.4339 -0.1818 -1.6657 34 1 5.7980 0.3124 -1.1056 35 1 5.5057 0.4862 -2.8526 36 1 6.8429 2.3839 -1.9802 37 1 5.2558 2.9369 -2.5666 38 1 5.9715 2.3424 0.3404 39 1 5.8031 3.9628 -0.3763 40 1 4.5866 6.5587 -0.6644 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:23 Heat of formation + Delta-G solvation = -12.661276 kcal Electronic energy + Delta-G solvation = -17309.859001 eV Core-core repulsion = 14930.885333 eV Total energy + Delta-G solvation = -2378.973668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89575 -35.78434 -32.49892 -31.09092 -29.87335 -29.02713 -26.77541 -24.68722 -23.30526 -21.53431 -20.81723 -19.20456 -18.27005 -15.74019 -15.50426 -14.95562 -14.62207 -13.81943 -13.65435 -13.21584 -12.94469 -12.64250 -12.43558 -12.11775 -11.65967 -11.60781 -11.32181 -11.11538 -10.96229 -10.85106 -10.63971 -10.50998 -10.30688 -10.16549 -9.94928 -9.78109 -9.53727 -9.10012 -8.76047 -8.52603 -8.08851 -7.32309 -5.81778 -3.81578 3.41847 3.46158 3.50166 4.57861 4.69077 5.41181 5.50134 5.60026 5.67876 5.78643 5.84478 5.85025 5.90020 5.97551 6.04085 6.11052 6.29815 6.33762 6.41945 6.49353 6.53778 6.58237 6.65933 6.69379 6.70758 6.84115 6.89244 6.98801 7.16598 7.24497 7.53484 7.58355 7.87422 7.89628 8.03164 8.13437 8.32757 8.68405 9.21491 9.79281 11.24856 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.011602 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.994728 B = 2412.752264 C = 2815.040306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 N -0.513 5.513 4 C 0.051 3.949 5 C -0.188 4.188 6 C 0.098 3.902 7 H 0.013 0.987 8 C -0.102 4.102 9 C -0.110 4.110 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.053 3.947 13 H 0.028 0.972 14 C -0.472 4.472 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.883 3.117 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.280 1.280 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.009 0.991 39 H 0.092 0.908 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -8.912 1.572 9.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 N -0.236 5.236 4 C -0.077 4.077 5 C -0.247 4.247 6 C -0.010 4.010 7 H 0.030 0.970 8 C -0.139 4.139 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.148 4.148 12 C 0.034 3.966 13 H 0.046 0.954 14 C -0.511 4.511 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.712 3.288 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.206 1.206 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.110 0.890 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.684 -8.484 1.208 8.979 hybrid contribution -0.017 0.136 0.018 0.138 sum -2.701 -8.348 1.226 8.859 Atomic orbital electron populations 1.21778 0.95931 1.00244 1.02303 1.22153 0.95305 0.91481 0.99898 1.62158 1.15325 1.12795 1.33306 1.22150 0.98026 1.00785 0.86710 1.22423 1.02246 1.00253 0.99810 1.21713 0.85420 0.99567 0.94303 0.96957 1.21516 0.95562 0.98120 0.98725 1.21459 0.96199 0.98028 0.99113 1.21385 0.97442 0.94651 1.00611 1.21548 0.98553 1.01747 0.92996 1.18783 0.91649 0.88493 0.97627 0.95439 1.21060 1.21266 0.92678 1.16097 0.91919 1.24931 0.95507 0.97926 0.96087 1.69863 1.34243 1.11089 1.38830 0.86798 0.80183 0.79139 0.82640 1.20542 1.21853 1.20635 0.92976 0.92036 0.93467 0.91189 0.95955 0.88751 0.92194 0.93666 0.92123 0.93133 0.90378 0.94647 0.93950 0.93736 0.95187 0.91023 0.97224 0.88952 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.85 37.16 0.37 -1.66 16 2 C 0.04 0.64 5.39 -3.82 -0.02 0.62 16 3 N -0.51 -9.83 4.10 -226.64 -0.93 -10.76 16 4 C 0.05 0.95 5.36 -3.83 -0.02 0.93 16 5 C -0.19 -3.12 9.01 37.16 0.33 -2.79 16 6 C 0.10 1.99 0.98 -67.71 -0.07 1.93 16 7 H 0.01 0.26 6.73 -51.93 -0.35 -0.09 16 8 C -0.10 -1.96 4.83 -26.73 -0.13 -2.09 16 9 C -0.11 -2.04 5.92 -26.73 -0.16 -2.19 16 10 C -0.10 -2.18 5.70 -26.73 -0.15 -2.34 16 11 C -0.11 -2.57 5.24 -26.73 -0.14 -2.71 16 12 C 0.05 1.26 1.45 -91.77 -0.13 1.13 16 13 H 0.03 0.72 5.86 -51.93 -0.30 0.42 16 14 C -0.47 -12.29 6.07 -34.44 -0.21 -12.50 16 15 H 0.06 1.68 6.63 -52.49 -0.35 1.33 16 16 C 0.05 1.47 5.30 -17.82 -0.09 1.38 16 17 N -0.90 -25.29 11.32 55.43 0.63 -24.66 16 18 Si 0.88 21.47 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H 0.05 0.72 6.40 -51.93 -0.33 0.38 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.11 5.92 -51.93 -0.31 0.80 16 26 H 0.02 0.35 6.21 -51.93 -0.32 0.03 16 27 H 0.09 2.04 6.32 -51.93 -0.33 1.72 16 28 H 0.06 1.00 6.15 -51.93 -0.32 0.69 16 29 H 0.04 0.69 6.30 -51.93 -0.33 0.37 16 30 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.67 6.62 -51.93 -0.34 1.32 16 33 H 0.03 0.61 6.25 -51.93 -0.32 0.29 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.67 7.22 -51.93 -0.37 1.29 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 285.58 15.07 4.30 4.30 Total: -1.00 -26.74 285.58 -8.16 -34.89 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.71 Total: 0.09 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.42 Total: -20.31 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.30 Total: -35.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.74 -8.16 -34.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.233 kcal (2) G-P(sol) polarization free energy of solvation -26.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds