Wall clock time and date at job start Mon Mar 30 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46974 * 2 1 4 4 C 1.46895 * 111.00368 * 66.04743 * 3 2 1 5 5 C 1.52998 * 109.47077 * 67.86889 * 4 3 2 6 6 C 1.46908 * 110.99824 * 190.00197 * 3 2 1 7 7 H 1.08998 * 109.46934 * 302.28820 * 6 3 2 8 8 C 1.53005 * 109.47238 * 62.29208 * 6 3 2 9 9 C 1.53000 * 109.47029 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.46809 * 299.99695 * 9 8 6 11 11 C 1.53004 * 109.47395 * 60.00131 * 10 9 8 12 12 C 1.53000 * 109.47076 * 300.00125 * 11 10 9 13 13 H 1.09002 * 109.47047 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47058 * 299.99841 * 12 11 10 15 15 H 1.07991 * 120.00253 * 120.00010 * 14 12 11 16 16 C 1.37880 * 119.99703 * 300.00112 * 14 12 11 17 17 N 1.31512 * 120.00050 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99828 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47184 * 60.00247 * 18 16 14 20 20 H 1.48503 * 109.47139 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47582 * 300.00192 * 18 16 14 22 22 H 1.09007 * 109.46999 * 299.99935 * 1 2 3 23 23 H 1.09000 * 109.47377 * 60.00062 * 1 2 3 24 24 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47240 * 240.00075 * 2 1 3 26 26 H 1.09005 * 109.47360 * 119.99455 * 2 1 3 27 27 H 1.09000 * 109.47400 * 187.87216 * 4 3 2 28 28 H 1.09000 * 109.47015 * 307.86958 * 4 3 2 29 29 H 1.08998 * 109.47567 * 305.09743 * 5 4 3 30 30 H 1.09003 * 109.47417 * 65.10031 * 5 4 3 31 31 H 1.09004 * 109.46941 * 185.09532 * 5 4 3 32 32 H 1.08998 * 109.46771 * 59.99692 * 8 6 3 33 33 H 1.09002 * 109.46488 * 300.00121 * 8 6 3 34 34 H 1.08998 * 109.47215 * 59.99567 * 9 8 6 35 35 H 1.09002 * 109.47006 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46952 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47128 * 299.99925 * 10 9 8 38 38 H 1.09003 * 109.46604 * 59.99342 * 11 10 9 39 39 H 1.08991 * 109.47260 * 179.97438 * 11 10 9 40 40 H 0.97006 * 120.00068 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 2.4566 1.4448 2.4088 6 6 3.4685 1.4311 -0.2382 7 1 3.9809 0.8445 0.5243 8 6 3.7769 0.8518 -1.6204 9 6 5.2859 0.8993 -1.8681 10 6 5.7678 2.3500 -1.8041 11 6 5.4594 2.9295 -0.4220 12 6 3.9504 2.8819 -0.1742 13 1 3.7308 3.2942 0.8106 14 6 3.2424 3.6933 -1.2284 15 1 2.5209 3.2216 -1.8790 16 6 3.5158 5.0381 -1.3624 17 7 4.3940 5.6127 -0.5699 18 14 2.6387 6.0438 -2.6696 19 1 1.1739 5.9977 -2.4297 20 1 3.1059 7.4520 -2.6070 21 1 2.9385 5.4814 -4.0109 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.9189 3.1252 1.1727 28 1 0.6020 1.9581 1.4405 29 1 2.2777 0.3699 2.4329 30 1 3.5208 1.6329 2.2670 31 1 2.1315 1.8884 3.3499 32 1 3.2644 1.4385 -2.3827 33 1 3.4339 -0.1818 -1.6657 34 1 5.7980 0.3124 -1.1056 35 1 5.5057 0.4862 -2.8526 36 1 6.8429 2.3839 -1.9802 37 1 5.2558 2.9369 -2.5666 38 1 5.9715 2.3424 0.3404 39 1 5.8031 3.9628 -0.3763 40 1 4.5866 6.5587 -0.6644 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:23 Heat of formation + Delta-G solvation = -27.242756 kcal Electronic energy + Delta-G solvation = -17310.491302 eV Core-core repulsion = 14930.885333 eV Total energy + Delta-G solvation = -2379.605968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49100 -37.35685 -34.45319 -32.46685 -31.43507 -30.76668 -28.30435 -26.62137 -24.72931 -23.12417 -22.41822 -20.80936 -19.98367 -17.49232 -17.24301 -16.54612 -16.35412 -15.48239 -15.14361 -14.83524 -14.63528 -13.98822 -13.95974 -13.74563 -13.28627 -12.96285 -12.87031 -12.77438 -12.64288 -12.50988 -12.31338 -12.14322 -11.88112 -11.76974 -11.70356 -11.37449 -11.24176 -10.85221 -10.58418 -10.44470 -10.05968 -8.79702 -7.90815 -5.94715 1.45077 1.45988 1.52343 2.54476 3.23638 3.41667 4.10722 4.15537 4.22011 4.41567 4.43727 4.47169 4.49699 4.62639 4.69523 4.75496 4.80358 4.88346 4.92396 5.02950 5.06961 5.10863 5.18373 5.21891 5.25139 5.28937 5.33291 5.45155 5.54047 5.61750 5.74246 5.82681 5.86625 6.05411 6.19506 6.52547 6.61631 6.73080 7.13367 7.68007 9.14282 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.011602 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.994728 B = 2412.752264 C = 2815.040306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.040 3.960 3 N -0.532 5.532 4 C 0.054 3.946 5 C -0.178 4.178 6 C 0.106 3.894 7 H 0.015 0.985 8 C -0.098 4.098 9 C -0.104 4.104 10 C -0.099 4.099 11 C -0.109 4.109 12 C 0.055 3.945 13 H -0.004 1.004 14 C -0.464 4.464 15 H 0.053 0.947 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.934 3.066 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.276 1.276 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -11.172 1.215 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 N -0.256 5.256 4 C -0.074 4.074 5 C -0.236 4.236 6 C -0.002 4.002 7 H 0.033 0.967 8 C -0.135 4.135 9 C -0.142 4.142 10 C -0.137 4.137 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.014 0.986 14 C -0.502 4.502 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.568 5.568 18 Si 0.762 3.238 19 H -0.205 1.205 20 H -0.220 1.220 21 H -0.201 1.201 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.347 -10.756 0.844 11.296 hybrid contribution 0.164 0.828 0.167 0.861 sum -3.183 -9.928 1.011 10.475 Atomic orbital electron populations 1.21738 0.94306 1.01884 1.01764 1.22238 0.96604 0.89395 1.00521 1.62109 1.14404 1.15176 1.33861 1.22022 0.99326 0.98533 0.87488 1.22296 1.00433 1.01264 0.99652 1.21501 0.86478 0.96956 0.95286 0.96703 1.21477 0.96032 0.99144 0.96894 1.21427 0.95560 0.96081 1.01156 1.21296 0.98266 0.96168 0.97942 1.21448 0.98271 1.00082 0.94982 1.18679 0.91904 0.90659 0.95129 0.98626 1.21195 1.20426 0.92806 1.15811 0.92837 1.25530 0.96359 0.99098 0.97821 1.70006 1.35629 1.10909 1.40282 0.85984 0.79131 0.77793 0.80873 1.20458 1.22031 1.20116 0.92919 0.93164 0.90744 0.90733 0.94961 0.92989 0.90376 0.91846 0.94302 0.91649 0.92741 0.91860 0.92353 0.91208 0.93598 0.93745 0.96200 0.92432 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.85 71.98 0.71 -2.77 16 2 C 0.04 1.17 5.39 86.30 0.46 1.63 16 3 N -0.53 -19.80 4.10 -870.97 -3.57 -23.37 16 4 C 0.05 1.99 5.36 86.30 0.46 2.45 16 5 C -0.18 -5.67 9.01 71.98 0.65 -5.02 16 6 C 0.11 4.22 0.98 44.92 0.04 4.27 16 7 H 0.02 0.60 6.73 -2.39 -0.02 0.58 16 8 C -0.10 -3.57 4.83 30.60 0.15 -3.42 16 9 C -0.10 -3.59 5.92 30.59 0.18 -3.40 16 10 C -0.10 -4.11 5.70 30.60 0.17 -3.94 16 11 C -0.11 -5.18 5.24 30.60 0.16 -5.02 16 12 C 0.05 2.66 1.45 -11.54 -0.02 2.64 16 13 H 0.00 -0.23 5.86 -2.39 -0.01 -0.25 16 14 C -0.46 -24.66 6.07 25.60 0.16 -24.50 16 15 H 0.05 2.91 6.63 -2.92 -0.02 2.89 16 16 C 0.01 0.44 5.30 84.66 0.45 0.88 16 17 N -0.93 -53.90 11.32 21.45 0.24 -53.65 16 18 Si 0.93 44.84 29.54 68.60 2.03 46.87 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H 0.05 1.30 6.40 -2.38 -0.02 1.28 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 2.11 5.92 -2.39 -0.01 2.09 16 26 H 0.03 0.89 6.21 -2.38 -0.01 0.88 16 27 H 0.05 2.33 6.32 -2.39 -0.02 2.32 16 28 H 0.08 2.52 6.15 -2.39 -0.01 2.51 16 29 H 0.06 1.78 6.30 -2.39 -0.02 1.77 16 30 H 0.04 1.39 6.21 -2.39 -0.01 1.38 16 31 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.05 2.25 6.62 -2.39 -0.02 2.24 16 33 H 0.06 1.97 6.25 -2.39 -0.01 1.95 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 2.07 7.22 -2.39 -0.02 2.05 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 40 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -58.43 285.58 3.28 -55.16 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.00 Total: 11.21 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 3.58 Total: -36.20 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -3.33 Total: -77.03 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -58.43 3.28 -55.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.912 kcal (2) G-P(sol) polarization free energy of solvation -58.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds