Wall clock time and date at job start Mon Mar 30 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46942 * 2 1 4 4 C 1.46901 * 110.99694 * 63.91437 * 3 2 1 5 5 C 1.52997 * 109.47149 * 64.66901 * 4 3 2 6 6 C 1.46900 * 111.00007 * 299.95714 * 3 2 1 7 7 H 1.09004 * 109.46836 * 60.00544 * 6 3 2 8 8 C 1.52995 * 109.47161 * 300.00450 * 6 3 2 9 9 C 1.53000 * 109.46944 * 180.02562 * 8 6 3 10 10 C 1.52999 * 109.47357 * 59.99561 * 9 8 6 11 11 C 1.52995 * 109.47452 * 300.00128 * 10 9 8 12 12 C 1.52999 * 109.47233 * 179.97438 * 6 3 2 13 13 H 1.09002 * 109.47296 * 300.00729 * 12 6 3 14 14 C 1.50704 * 109.46724 * 59.99903 * 12 6 3 15 15 H 1.08000 * 120.00155 * 0.02562 * 14 12 6 16 16 C 1.37880 * 119.99537 * 179.97438 * 14 12 6 17 17 N 1.31511 * 120.00247 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99636 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47189 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47283 * 120.00149 * 18 16 14 21 21 H 1.48504 * 109.47043 * 240.00261 * 18 16 14 22 22 H 1.08997 * 109.47672 * 61.14192 * 1 2 3 23 23 H 1.09001 * 109.47259 * 301.14183 * 1 2 3 24 24 H 1.08999 * 109.47125 * 181.14704 * 1 2 3 25 25 H 1.08991 * 109.47155 * 120.00139 * 2 1 3 26 26 H 1.09001 * 109.46905 * 240.00384 * 2 1 3 27 27 H 1.09003 * 109.46304 * 184.65930 * 4 3 2 28 28 H 1.08995 * 109.47142 * 304.66154 * 4 3 2 29 29 H 1.08999 * 109.47727 * 53.96735 * 5 4 3 30 30 H 1.09005 * 109.47108 * 173.97211 * 5 4 3 31 31 H 1.09009 * 109.46895 * 293.96314 * 5 4 3 32 32 H 1.09005 * 109.47265 * 299.99242 * 8 6 3 33 33 H 1.08998 * 109.47794 * 60.00137 * 8 6 3 34 34 H 1.09001 * 109.47221 * 299.99581 * 9 8 6 35 35 H 1.09002 * 109.47358 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47615 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.46728 * 60.00334 * 10 9 8 38 38 H 1.09005 * 109.47265 * 300.00396 * 11 10 9 39 39 H 1.08998 * 109.47794 * 179.97438 * 11 10 9 40 40 H 0.97005 * 119.99666 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6265 2.0823 1.2318 5 6 2.3103 1.4233 2.4313 6 6 1.5494 2.1096 -1.1882 7 1 0.4595 2.1243 -1.1971 8 6 2.0604 1.4086 -2.4484 9 6 1.5712 2.1637 -3.6859 10 6 2.1007 3.5987 -3.6503 11 6 1.5897 4.2997 -2.3900 12 6 2.0779 3.5450 -1.1525 13 1 1.7135 4.0442 -0.2546 14 6 3.5847 3.5253 -1.1397 15 1 4.1126 2.5832 -1.1559 16 6 4.2894 4.7100 -1.1085 17 7 3.6465 5.8572 -1.0893 18 14 6.1572 4.6856 -1.0933 19 1 6.6341 3.2795 -1.1201 20 1 6.6713 5.4049 -2.2864 21 1 6.6510 5.3530 0.1380 22 1 -0.3634 0.4960 -0.9000 23 1 -0.3634 0.5315 0.8796 24 1 -0.3633 -1.0274 0.0206 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.9295 3.1275 1.1699 28 1 0.5449 2.0241 1.3528 29 1 3.3862 1.3856 2.2608 30 1 2.1051 2.0039 3.3307 31 1 1.9267 0.4107 2.5571 32 1 3.1503 1.3940 -2.4396 33 1 1.6835 0.3862 -2.4737 34 1 0.4813 2.1787 -3.6952 35 1 1.9348 1.6640 -4.5838 36 1 1.7525 4.1366 -4.5321 37 1 3.1906 3.5836 -3.6411 38 1 0.4998 4.3147 -2.3991 39 1 1.9672 5.3219 -2.3643 40 1 4.1424 6.6906 -1.0670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:25 Heat of formation + Delta-G solvation = -12.037223 kcal Electronic energy + Delta-G solvation = -17298.139239 eV Core-core repulsion = 14919.192632 eV Total energy + Delta-G solvation = -2378.946607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.89358 -35.82068 -32.51431 -30.93987 -29.98502 -29.03210 -26.78480 -24.57893 -23.59502 -21.39669 -20.76222 -19.25154 -18.30542 -15.77506 -15.46830 -15.09620 -14.26513 -13.92570 -13.75755 -13.29713 -12.81025 -12.63456 -12.55072 -12.17180 -11.70835 -11.60890 -11.43829 -11.10124 -10.88781 -10.81023 -10.62256 -10.47406 -10.34069 -10.13764 -9.96133 -9.81523 -9.53354 -9.09888 -8.76990 -8.51002 -8.08526 -7.32661 -5.82107 -3.81660 3.38601 3.47287 3.52546 4.57801 4.69780 5.40070 5.49087 5.53705 5.69555 5.76861 5.80216 5.85749 5.92893 6.01275 6.04952 6.12398 6.18548 6.33450 6.41309 6.49641 6.53385 6.58575 6.65630 6.68400 6.80883 6.83372 6.85845 6.92045 7.16298 7.24803 7.53650 7.58006 7.85532 7.89169 8.02332 8.13452 8.32520 8.67868 9.21757 9.79285 11.24627 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.012092 C = 0.009401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.141166 B = 2315.103847 C = 2977.707428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 N -0.512 5.512 4 C 0.047 3.953 5 C -0.143 4.143 6 C 0.096 3.904 7 H 0.014 0.986 8 C -0.100 4.100 9 C -0.110 4.110 10 C -0.103 4.103 11 C -0.109 4.109 12 C 0.051 3.949 13 H 0.025 0.975 14 C -0.469 4.469 15 H 0.064 0.936 16 C 0.053 3.947 17 N -0.900 5.900 18 Si 0.882 3.118 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.289 1.289 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.009 0.991 39 H 0.093 0.907 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -8.138 0.712 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.086 4.086 3 N -0.235 5.235 4 C -0.080 4.080 5 C -0.201 4.201 6 C -0.011 4.011 7 H 0.032 0.968 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.148 4.148 12 C 0.032 3.968 13 H 0.043 0.957 14 C -0.508 4.508 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.541 5.541 18 Si 0.711 3.289 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.215 1.215 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.111 0.889 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.288 -7.968 0.711 9.077 hybrid contribution 0.064 0.087 0.044 0.116 sum -4.225 -7.882 0.755 8.974 Atomic orbital electron populations 1.22423 0.99560 1.01059 1.01990 1.22221 0.91952 0.92670 1.01729 1.62164 1.58765 1.00475 1.02081 1.22116 0.95912 1.00578 0.89412 1.21760 1.01982 0.99268 0.97051 1.21721 0.94231 0.96819 0.88337 0.96840 1.21486 1.02464 0.96064 0.93793 1.21460 0.98954 0.97486 0.96903 1.21382 1.01898 0.93612 0.97182 1.21529 0.95066 1.03100 0.95093 1.18808 0.96264 0.87720 0.93973 0.95663 1.21130 0.90517 0.92113 1.47001 0.91794 1.24936 0.97485 0.95865 0.96255 1.69881 1.34454 0.97027 1.52704 0.86685 0.87185 0.77860 0.77157 1.19868 1.21584 1.21529 0.92458 0.92805 0.93231 0.91609 0.91169 0.88789 0.96350 0.91754 0.93286 0.93955 0.90408 0.94556 0.93961 0.93732 0.95171 0.91045 0.97199 0.88915 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 9.23 37.16 0.34 -2.41 16 2 C 0.04 0.68 5.48 -3.82 -0.02 0.66 16 3 N -0.51 -9.80 4.11 -226.65 -0.93 -10.73 16 4 C 0.05 0.88 5.21 -3.83 -0.02 0.86 16 5 C -0.14 -2.27 9.65 37.16 0.36 -1.91 16 6 C 0.10 1.97 1.21 -67.72 -0.08 1.89 16 7 H 0.01 0.28 6.33 -51.93 -0.33 -0.05 16 8 C -0.10 -1.92 4.74 -26.73 -0.13 -2.05 16 9 C -0.11 -2.03 5.92 -26.73 -0.16 -2.18 16 10 C -0.10 -2.17 5.70 -26.73 -0.15 -2.33 16 11 C -0.11 -2.56 5.23 -26.76 -0.14 -2.70 16 12 C 0.05 1.21 1.65 -91.80 -0.15 1.06 16 13 H 0.03 0.67 6.16 -51.93 -0.32 0.35 16 14 C -0.47 -12.22 6.24 -34.44 -0.21 -12.44 16 15 H 0.06 1.72 6.63 -52.49 -0.35 1.37 16 16 C 0.05 1.44 5.30 -17.82 -0.09 1.35 16 17 N -0.90 -25.35 11.31 55.43 0.63 -24.72 16 18 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 23 H 0.05 0.78 6.34 -51.93 -0.33 0.45 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.98 6.38 -51.93 -0.33 0.64 16 26 H 0.07 1.10 6.30 -51.93 -0.33 0.78 16 27 H 0.09 2.03 5.77 -51.93 -0.30 1.73 16 28 H 0.02 0.32 6.17 -51.93 -0.32 0.00 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.60 6.73 -51.92 -0.35 0.25 16 32 H 0.08 1.65 6.62 -51.93 -0.34 1.31 16 33 H 0.04 0.62 6.40 -51.93 -0.33 0.29 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.65 7.22 -51.93 -0.37 1.28 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 286.73 15.07 4.32 4.32 Total: -1.00 -26.85 286.73 -8.21 -35.07 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.75 Total: -0.20 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.46 Total: -20.20 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.30 Total: -35.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.85 -8.21 -35.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.031 kcal (2) G-P(sol) polarization free energy of solvation -26.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds