Wall clock time and date at job start Mon Mar 30 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46942 * 2 1 4 4 C 1.46901 * 110.99694 * 63.91437 * 3 2 1 5 5 C 1.52997 * 109.47149 * 64.66901 * 4 3 2 6 6 C 1.46900 * 111.00007 * 299.95714 * 3 2 1 7 7 H 1.09004 * 109.46836 * 60.00544 * 6 3 2 8 8 C 1.52995 * 109.47161 * 300.00450 * 6 3 2 9 9 C 1.53000 * 109.46944 * 180.02562 * 8 6 3 10 10 C 1.52999 * 109.47357 * 59.99561 * 9 8 6 11 11 C 1.52995 * 109.47452 * 300.00128 * 10 9 8 12 12 C 1.52999 * 109.47233 * 179.97438 * 6 3 2 13 13 H 1.09002 * 109.47296 * 300.00729 * 12 6 3 14 14 C 1.50704 * 109.46724 * 59.99903 * 12 6 3 15 15 H 1.08000 * 120.00155 * 0.02562 * 14 12 6 16 16 C 1.37880 * 119.99537 * 179.97438 * 14 12 6 17 17 N 1.31511 * 120.00247 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99636 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47189 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47283 * 120.00149 * 18 16 14 21 21 H 1.48504 * 109.47043 * 240.00261 * 18 16 14 22 22 H 1.08997 * 109.47672 * 61.14192 * 1 2 3 23 23 H 1.09001 * 109.47259 * 301.14183 * 1 2 3 24 24 H 1.08999 * 109.47125 * 181.14704 * 1 2 3 25 25 H 1.08991 * 109.47155 * 120.00139 * 2 1 3 26 26 H 1.09001 * 109.46905 * 240.00384 * 2 1 3 27 27 H 1.09003 * 109.46304 * 184.65930 * 4 3 2 28 28 H 1.08995 * 109.47142 * 304.66154 * 4 3 2 29 29 H 1.08999 * 109.47727 * 53.96735 * 5 4 3 30 30 H 1.09005 * 109.47108 * 173.97211 * 5 4 3 31 31 H 1.09009 * 109.46895 * 293.96314 * 5 4 3 32 32 H 1.09005 * 109.47265 * 299.99242 * 8 6 3 33 33 H 1.08998 * 109.47794 * 60.00137 * 8 6 3 34 34 H 1.09001 * 109.47221 * 299.99581 * 9 8 6 35 35 H 1.09002 * 109.47358 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47615 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.46728 * 60.00334 * 10 9 8 38 38 H 1.09005 * 109.47265 * 300.00396 * 11 10 9 39 39 H 1.08998 * 109.47794 * 179.97438 * 11 10 9 40 40 H 0.97005 * 119.99666 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6265 2.0823 1.2318 5 6 2.3103 1.4233 2.4313 6 6 1.5494 2.1096 -1.1882 7 1 0.4595 2.1243 -1.1971 8 6 2.0604 1.4086 -2.4484 9 6 1.5712 2.1637 -3.6859 10 6 2.1007 3.5987 -3.6503 11 6 1.5897 4.2997 -2.3900 12 6 2.0779 3.5450 -1.1525 13 1 1.7135 4.0442 -0.2546 14 6 3.5847 3.5253 -1.1397 15 1 4.1126 2.5832 -1.1559 16 6 4.2894 4.7100 -1.1085 17 7 3.6465 5.8572 -1.0893 18 14 6.1572 4.6856 -1.0933 19 1 6.6341 3.2795 -1.1201 20 1 6.6713 5.4049 -2.2864 21 1 6.6510 5.3530 0.1380 22 1 -0.3634 0.4960 -0.9000 23 1 -0.3634 0.5315 0.8796 24 1 -0.3633 -1.0274 0.0206 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.9295 3.1275 1.1699 28 1 0.5449 2.0241 1.3528 29 1 3.3862 1.3856 2.2608 30 1 2.1051 2.0039 3.3307 31 1 1.9267 0.4107 2.5571 32 1 3.1503 1.3940 -2.4396 33 1 1.6835 0.3862 -2.4737 34 1 0.4813 2.1787 -3.6952 35 1 1.9348 1.6640 -4.5838 36 1 1.7525 4.1366 -4.5321 37 1 3.1906 3.5836 -3.6411 38 1 0.4998 4.3147 -2.3991 39 1 1.9672 5.3219 -2.3643 40 1 4.1424 6.6906 -1.0670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:25 Heat of formation + Delta-G solvation = -26.706820 kcal Electronic energy + Delta-G solvation = -17298.775360 eV Core-core repulsion = 14919.192632 eV Total energy + Delta-G solvation = -2379.582728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47745 -37.39265 -34.46479 -32.35217 -31.55952 -30.71360 -28.31980 -26.54597 -24.95078 -22.98331 -22.41129 -20.84653 -19.98715 -17.49302 -17.26303 -16.73242 -16.04165 -15.43943 -15.25056 -14.86182 -14.63902 -14.02227 -13.92563 -13.75062 -13.35601 -13.01753 -12.92177 -12.83819 -12.65504 -12.37347 -12.19184 -12.17889 -11.89041 -11.82462 -11.66048 -11.37462 -11.23640 -10.85967 -10.58251 -10.45330 -10.05180 -8.79863 -7.91513 -5.95303 1.41413 1.45585 1.55384 2.53922 3.23689 3.41253 4.12536 4.14038 4.23645 4.41180 4.44010 4.48849 4.51532 4.64531 4.70657 4.77157 4.79841 4.86344 4.91442 5.00059 5.05723 5.10742 5.16558 5.18974 5.25177 5.32758 5.36084 5.46230 5.49558 5.63773 5.74277 5.82164 5.86558 6.02673 6.19382 6.51641 6.61476 6.72471 7.12897 7.67497 9.14021 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.012092 C = 0.009401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.141166 B = 2315.103847 C = 2977.707428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.050 3.950 5 C -0.134 4.134 6 C 0.105 3.895 7 H 0.016 0.984 8 C -0.095 4.095 9 C -0.104 4.104 10 C -0.099 4.099 11 C -0.108 4.108 12 C 0.051 3.949 13 H -0.009 1.009 14 C -0.459 4.459 15 H 0.055 0.945 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.934 3.066 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.291 1.291 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 -10.463 0.387 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.085 4.085 3 N -0.255 5.255 4 C -0.078 4.078 5 C -0.192 4.192 6 C -0.003 4.003 7 H 0.034 0.966 8 C -0.133 4.133 9 C -0.142 4.142 10 C -0.137 4.137 11 C -0.147 4.147 12 C 0.032 3.968 13 H 0.009 0.991 14 C -0.498 4.498 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.217 1.217 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.866 -10.311 0.387 11.408 hybrid contribution 0.210 0.805 0.179 0.851 sum -4.656 -9.506 0.566 10.600 Atomic orbital electron populations 1.22335 0.98103 1.02547 1.01281 1.22295 0.93141 0.90395 1.02677 1.62117 1.59687 1.02049 1.01607 1.22016 0.96685 0.98593 0.90467 1.21684 1.00653 1.00561 0.96271 1.21509 0.94104 0.94830 0.89876 0.96614 1.21433 1.00939 0.97558 0.93358 1.21429 0.99825 0.95347 0.97632 1.21294 1.00193 0.95753 0.96413 1.21424 0.95524 1.01437 0.96296 1.18734 0.95116 0.90221 0.92728 0.99076 1.21237 0.91750 0.91355 1.45411 0.92730 1.25544 1.00848 0.95845 0.96722 1.70021 1.35491 0.97311 1.54126 0.85857 0.83291 0.77781 0.76810 1.19421 1.21509 1.21748 0.93470 0.93183 0.90621 0.90240 0.90687 0.92971 0.95395 0.93315 0.91972 0.91613 0.92748 0.91777 0.92399 0.91157 0.93579 0.93685 0.96196 0.92414 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.67 9.23 71.98 0.66 -4.01 16 2 C 0.04 1.23 5.48 86.30 0.47 1.70 16 3 N -0.53 -19.77 4.11 -870.99 -3.58 -23.35 16 4 C 0.05 1.84 5.21 86.30 0.45 2.29 16 5 C -0.13 -4.06 9.65 71.98 0.69 -3.37 16 6 C 0.10 4.19 1.21 44.91 0.05 4.24 16 7 H 0.02 0.63 6.33 -2.38 -0.02 0.62 16 8 C -0.10 -3.45 4.74 30.59 0.15 -3.31 16 9 C -0.10 -3.57 5.92 30.59 0.18 -3.39 16 10 C -0.10 -4.10 5.70 30.59 0.17 -3.92 16 11 C -0.11 -5.14 5.23 30.57 0.16 -4.98 16 12 C 0.05 2.47 1.65 -11.56 -0.02 2.45 16 13 H -0.01 -0.48 6.16 -2.39 -0.01 -0.50 16 14 C -0.46 -24.44 6.24 25.60 0.16 -24.28 16 15 H 0.05 2.98 6.63 -2.91 -0.02 2.96 16 16 C 0.01 0.34 5.30 84.66 0.45 0.79 16 17 N -0.93 -54.09 11.31 21.45 0.24 -53.85 16 18 Si 0.93 44.92 29.54 68.60 2.03 46.95 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 H 0.05 1.30 6.47 -2.39 -0.02 1.28 16 23 H 0.05 1.31 6.34 -2.39 -0.02 1.29 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 2.08 6.38 -2.39 -0.02 2.07 16 26 H 0.07 2.10 6.30 -2.39 -0.02 2.08 16 27 H 0.05 2.35 5.77 -2.39 -0.01 2.33 16 28 H 0.03 0.96 6.17 -2.39 -0.01 0.95 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.68 16 31 H 0.06 1.67 6.73 -2.38 -0.02 1.66 16 32 H 0.05 2.24 6.62 -2.38 -0.02 2.22 16 33 H 0.06 1.98 6.40 -2.39 -0.02 1.96 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 2.08 7.22 -2.38 -0.02 2.06 16 38 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 3.15 6.06 -2.39 -0.01 3.13 16 40 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -58.82 286.73 3.27 -55.55 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.00 Total: 10.47 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 3.59 Total: -35.77 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.34 Total: -77.20 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -58.82 3.27 -55.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.843 kcal (2) G-P(sol) polarization free energy of solvation -58.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds