Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47248 * 2 1 4 4 N 1.46903 * 109.46802 * 239.99418 * 2 1 3 5 5 C 1.53005 * 109.46859 * 119.99704 * 2 1 3 6 6 C 1.52997 * 109.46959 * 205.40251 * 5 2 1 7 7 C 1.53007 * 109.47089 * 186.40170 * 6 5 2 8 8 C 1.50701 * 109.47028 * 301.92948 * 7 6 5 9 9 H 1.08001 * 119.99911 * 354.63776 * 8 7 6 10 10 C 1.37870 * 120.00116 * 174.63486 * 8 7 6 11 11 N 1.31516 * 119.99990 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00065 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47303 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46996 * 120.00689 * 12 10 8 15 15 H 1.48500 * 109.47243 * 240.00006 * 12 10 8 16 16 C 1.52995 * 109.47219 * 306.39687 * 6 5 2 17 17 C 1.53008 * 109.47195 * 179.97438 * 16 6 5 18 18 C 1.52992 * 109.47295 * 300.00844 * 17 16 6 19 19 C 1.52995 * 109.47688 * 59.99458 * 18 17 16 20 20 C 1.52993 * 109.47388 * 66.40300 * 6 5 2 21 21 H 1.09010 * 109.47144 * 300.00594 * 1 2 3 22 22 H 1.09001 * 109.47350 * 59.99972 * 1 2 3 23 23 H 1.09003 * 109.47673 * 180.02562 * 1 2 3 24 24 H 1.00900 * 110.99337 * 175.47517 * 4 2 1 25 25 H 1.00894 * 110.99796 * 299.42882 * 4 2 1 26 26 H 1.09003 * 109.47158 * 85.40538 * 5 2 1 27 27 H 1.08999 * 109.47367 * 325.40298 * 5 2 1 28 28 H 1.08995 * 109.46921 * 181.93079 * 7 6 5 29 29 H 1.09003 * 109.47148 * 61.93028 * 7 6 5 30 30 H 0.96998 * 120.00053 * 179.97438 * 11 10 8 31 31 H 1.08992 * 109.47962 * 300.00307 * 16 6 5 32 32 H 1.09003 * 109.47100 * 60.00600 * 16 6 5 33 33 H 1.09003 * 109.46745 * 180.02562 * 17 16 6 34 34 H 1.09003 * 109.46345 * 60.00458 * 17 16 6 35 35 H 1.09005 * 109.47007 * 299.99672 * 18 17 16 36 36 H 1.09000 * 109.46967 * 179.97438 * 18 17 16 37 37 H 1.08992 * 109.47962 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.46722 * 60.00040 * 19 18 17 39 39 H 1.09005 * 109.46888 * 299.99962 * 20 6 5 40 40 H 1.09001 * 109.47487 * 59.99203 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 6 3.4384 -0.2086 1.5990 7 6 4.0132 -1.0385 2.7487 8 6 3.0925 -0.9535 3.9388 9 1 2.2342 -0.2986 3.9118 10 6 3.3460 -1.7118 5.0620 11 7 4.3916 -2.5089 5.0951 12 14 2.2053 -1.6058 6.5375 13 1 1.1118 -0.6433 6.2496 14 1 1.6257 -2.9452 6.8122 15 1 2.9713 -1.1453 7.7234 16 6 4.3482 -0.3337 0.3753 17 6 5.7466 0.1796 0.7248 18 6 5.6601 1.6472 1.1482 19 6 4.7503 1.7723 2.3719 20 6 3.3525 1.2590 2.0227 21 1 -0.3634 0.5140 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.0254 -0.6422 -1.2607 25 1 1.7037 -1.6507 -1.2179 26 1 2.0834 -1.7934 1.0576 27 1 1.3635 -0.5281 2.0819 28 1 4.9952 -0.6516 3.0206 29 1 4.1065 -2.0783 2.4350 30 1 4.5701 -3.0421 5.8855 31 1 4.4095 -1.3792 0.0734 32 1 3.9388 0.2576 -0.4438 33 1 6.3946 0.0908 -0.1472 34 1 6.1562 -0.4114 1.5440 35 1 5.2504 2.2382 0.3290 36 1 6.6563 2.0127 1.3976 37 1 4.6891 2.8178 2.6739 38 1 5.1600 1.1814 3.1911 39 1 2.9430 1.8503 1.2036 40 1 2.7043 1.3482 2.8945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = -35.251157 kcal Electronic energy + Delta-G solvation = -17061.943267 eV Core-core repulsion = 14681.990028 eV Total energy + Delta-G solvation = -2379.953239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.41336 -35.59615 -33.11889 -31.30025 -30.30475 -28.68390 -27.07973 -25.51649 -23.14433 -21.95447 -20.64148 -20.15292 -17.59547 -16.17024 -15.76995 -14.85232 -14.45384 -14.13070 -13.85557 -13.67459 -13.21061 -12.82235 -12.43097 -11.94468 -11.77877 -11.65771 -11.48307 -11.40713 -11.04398 -10.96695 -10.66008 -10.63952 -10.44364 -10.42411 -10.11130 -9.82681 -9.55735 -9.27523 -8.98477 -8.67958 -8.31985 -8.05881 -5.97455 -3.97214 3.30248 3.38709 3.41595 4.47241 4.98371 5.26235 5.32421 5.36693 5.39812 5.48718 5.62820 5.76411 5.90326 5.94257 6.05351 6.11860 6.16084 6.18315 6.21351 6.25417 6.31050 6.41498 6.51199 6.64600 6.69862 6.73459 6.80456 6.90192 6.98147 7.13040 7.17878 7.34876 7.57718 7.73935 7.79304 7.87754 8.04096 8.48329 9.08792 9.65707 11.13864 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.010505 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.503981 B = 2664.723570 C = 3345.475192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.079 0.921 4 N -0.857 5.857 5 C -0.128 4.128 6 C -0.050 4.050 7 C 0.033 3.967 8 C -0.506 4.506 9 H 0.057 0.943 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.884 3.116 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.286 1.286 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.096 4.096 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.344 0.656 25 H 0.332 0.668 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.022 0.978 29 H 0.013 0.987 30 H 0.258 0.742 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 5.546 -8.839 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 H 0.097 0.903 4 N -0.391 5.391 5 C -0.167 4.167 6 C -0.050 4.050 7 C -0.004 4.004 8 C -0.544 4.544 9 H 0.075 0.925 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.712 3.288 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.133 4.133 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.162 0.838 25 H 0.144 0.856 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.933 5.976 -9.142 11.092 hybrid contribution -0.070 -0.759 1.688 1.852 sum -2.002 5.217 -7.455 9.316 Atomic orbital electron populations 1.21803 0.95588 1.01429 1.01103 1.21614 0.94495 0.98615 0.88608 0.90340 1.59293 1.17770 1.20444 1.41587 1.22353 0.97686 0.99021 0.97678 1.20571 0.93395 0.95588 0.95478 1.19232 0.96023 0.94050 0.91079 1.21295 1.10430 1.23617 0.99058 0.92503 1.24995 0.95303 0.95650 0.98546 1.69971 1.27483 1.27226 1.28996 0.86668 0.81106 0.77722 0.83305 1.19824 1.21239 1.21203 1.21868 0.95709 0.99560 0.98178 1.21547 0.97034 0.96453 1.00688 1.21475 0.98937 0.96524 0.98093 1.21532 0.96275 0.99695 0.98220 1.21478 0.96470 0.95379 0.99995 0.92504 0.92915 0.93195 0.83780 0.85648 0.92845 0.90924 0.96038 0.96856 0.93275 0.93001 0.92459 0.93443 0.91014 0.93146 0.93140 0.93624 0.90424 0.94217 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.36 37.16 0.35 -1.62 16 2 C 0.08 1.18 2.76 -67.71 -0.19 0.99 16 3 H 0.08 1.23 5.77 -51.93 -0.30 0.93 16 4 N -0.86 -12.09 9.17 -4.67 -0.04 -12.13 16 5 C -0.13 -2.32 3.73 -26.73 -0.10 -2.42 16 6 C -0.05 -0.95 0.29 -154.51 -0.04 -1.00 16 7 C 0.03 0.80 3.35 -27.88 -0.09 0.70 16 8 C -0.51 -13.45 7.71 -34.44 -0.27 -13.72 16 9 H 0.06 1.49 5.71 -52.49 -0.30 1.19 16 10 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 12 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 C -0.12 -1.90 3.22 -26.73 -0.09 -1.99 16 17 C -0.12 -1.94 5.65 -26.73 -0.15 -2.09 16 18 C -0.11 -1.74 5.92 -26.74 -0.16 -1.90 16 19 C -0.12 -2.09 5.65 -26.76 -0.15 -2.24 16 20 C -0.10 -1.74 4.32 -26.76 -0.12 -1.86 16 21 H 0.06 0.77 8.12 -51.92 -0.42 0.35 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.34 4.77 5.07 -39.29 -0.20 4.57 16 25 H 0.33 4.44 8.87 -39.29 -0.35 4.09 16 26 H 0.05 1.02 7.96 -51.93 -0.41 0.60 16 27 H 0.07 1.44 6.58 -51.93 -0.34 1.10 16 28 H 0.02 0.55 4.81 -51.93 -0.25 0.30 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.06 0.87 5.28 -51.93 -0.27 0.59 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.33 6.47 -51.93 -0.34 0.99 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.58 6.39 -51.93 -0.33 1.25 16 39 H 0.04 0.65 6.29 -51.93 -0.33 0.33 16 40 H 0.07 1.34 6.64 -51.93 -0.34 1.00 16 LS Contribution 287.92 15.07 4.34 4.34 Total: -1.00 -27.92 287.92 -7.78 -35.70 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.69 Total: 7.07 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -1.10 Total: -25.68 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.69 Total: -37.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.92 -7.78 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.450 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds