Wall clock time and date at job start Mon Mar 30 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47248 * 2 1 4 4 N 1.46903 * 109.46802 * 239.99418 * 2 1 3 5 5 C 1.53005 * 109.46859 * 119.99704 * 2 1 3 6 6 C 1.52997 * 109.46959 * 205.40251 * 5 2 1 7 7 C 1.53007 * 109.47089 * 186.40170 * 6 5 2 8 8 C 1.50701 * 109.47028 * 301.92948 * 7 6 5 9 9 H 1.08001 * 119.99911 * 354.63776 * 8 7 6 10 10 C 1.37870 * 120.00116 * 174.63486 * 8 7 6 11 11 N 1.31516 * 119.99990 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00065 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47303 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46996 * 120.00689 * 12 10 8 15 15 H 1.48500 * 109.47243 * 240.00006 * 12 10 8 16 16 C 1.52995 * 109.47219 * 306.39687 * 6 5 2 17 17 C 1.53008 * 109.47195 * 179.97438 * 16 6 5 18 18 C 1.52992 * 109.47295 * 300.00844 * 17 16 6 19 19 C 1.52995 * 109.47688 * 59.99458 * 18 17 16 20 20 C 1.52993 * 109.47388 * 66.40300 * 6 5 2 21 21 H 1.09010 * 109.47144 * 300.00594 * 1 2 3 22 22 H 1.09001 * 109.47350 * 59.99972 * 1 2 3 23 23 H 1.09003 * 109.47673 * 180.02562 * 1 2 3 24 24 H 1.00900 * 110.99337 * 175.47517 * 4 2 1 25 25 H 1.00894 * 110.99796 * 299.42882 * 4 2 1 26 26 H 1.09003 * 109.47158 * 85.40538 * 5 2 1 27 27 H 1.08999 * 109.47367 * 325.40298 * 5 2 1 28 28 H 1.08995 * 109.46921 * 181.93079 * 7 6 5 29 29 H 1.09003 * 109.47148 * 61.93028 * 7 6 5 30 30 H 0.96998 * 120.00053 * 179.97438 * 11 10 8 31 31 H 1.08992 * 109.47962 * 300.00307 * 16 6 5 32 32 H 1.09003 * 109.47100 * 60.00600 * 16 6 5 33 33 H 1.09003 * 109.46745 * 180.02562 * 17 16 6 34 34 H 1.09003 * 109.46345 * 60.00458 * 17 16 6 35 35 H 1.09005 * 109.47007 * 299.99672 * 18 17 16 36 36 H 1.09000 * 109.46967 * 179.97438 * 18 17 16 37 37 H 1.08992 * 109.47962 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.46722 * 60.00040 * 19 18 17 39 39 H 1.09005 * 109.46888 * 299.99962 * 20 6 5 40 40 H 1.09001 * 109.47487 * 59.99203 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 6 3.4384 -0.2086 1.5990 7 6 4.0132 -1.0385 2.7487 8 6 3.0925 -0.9535 3.9388 9 1 2.2342 -0.2986 3.9118 10 6 3.3460 -1.7118 5.0620 11 7 4.3916 -2.5089 5.0951 12 14 2.2053 -1.6058 6.5375 13 1 1.1118 -0.6433 6.2496 14 1 1.6257 -2.9452 6.8122 15 1 2.9713 -1.1453 7.7234 16 6 4.3482 -0.3337 0.3753 17 6 5.7466 0.1796 0.7248 18 6 5.6601 1.6472 1.1482 19 6 4.7503 1.7723 2.3719 20 6 3.3525 1.2590 2.0227 21 1 -0.3634 0.5140 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.0254 -0.6422 -1.2607 25 1 1.7037 -1.6507 -1.2179 26 1 2.0834 -1.7934 1.0576 27 1 1.3635 -0.5281 2.0819 28 1 4.9952 -0.6516 3.0206 29 1 4.1065 -2.0783 2.4350 30 1 4.5701 -3.0421 5.8855 31 1 4.4095 -1.3792 0.0734 32 1 3.9388 0.2576 -0.4438 33 1 6.3946 0.0908 -0.1472 34 1 6.1562 -0.4114 1.5440 35 1 5.2504 2.2382 0.3290 36 1 6.6563 2.0127 1.3976 37 1 4.6891 2.8178 2.6739 38 1 5.1600 1.1814 3.1911 39 1 2.9430 1.8503 1.2036 40 1 2.7043 1.3482 2.8945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:36 Heat of formation + Delta-G solvation = -51.818463 kcal Electronic energy + Delta-G solvation = -17062.661679 eV Core-core repulsion = 14681.990028 eV Total energy + Delta-G solvation = -2380.671651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88397 -36.86326 -35.08631 -32.95057 -31.68307 -29.86614 -28.98815 -26.86868 -25.10595 -23.37902 -22.00502 -21.46149 -19.26402 -18.08990 -17.09906 -16.53748 -16.12832 -15.43102 -15.25799 -15.18274 -14.68287 -14.30925 -13.89448 -13.62365 -13.35890 -13.00182 -12.97853 -12.84354 -12.71771 -12.62423 -12.29376 -12.15836 -12.01540 -11.87803 -11.53088 -11.49538 -11.22629 -10.80167 -10.58136 -10.45485 -10.38132 -9.34352 -8.14015 -6.19527 1.35586 1.37521 1.48472 2.41698 3.19940 3.79704 3.92254 3.95442 3.99629 4.20914 4.36716 4.42451 4.59508 4.61557 4.67477 4.73608 4.78759 4.84610 4.91168 4.97782 5.06660 5.12681 5.21353 5.31557 5.35348 5.36746 5.38289 5.42108 5.50766 5.57911 5.61233 5.65644 5.82968 5.94277 5.98545 6.36103 6.41508 6.67584 6.96898 7.47173 8.97934 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.010505 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.503981 B = 2664.723570 C = 3345.475192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.083 0.917 4 N -0.851 5.851 5 C -0.122 4.122 6 C -0.047 4.047 7 C 0.043 3.957 8 C -0.507 4.507 9 H 0.060 0.940 10 C -0.003 4.003 11 N -0.937 5.937 12 Si 0.948 3.052 13 H -0.262 1.262 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.107 4.107 19 C -0.120 4.120 20 C -0.092 4.092 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.346 0.654 25 H 0.337 0.663 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.000 1.000 29 H -0.026 1.026 30 H 0.257 0.743 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 7.254 -10.390 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.101 0.899 4 N -0.385 5.385 5 C -0.161 4.161 6 C -0.047 4.047 7 C 0.006 3.994 8 C -0.546 4.546 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.579 5.579 12 Si 0.774 3.226 13 H -0.186 1.186 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.130 4.130 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.165 0.835 25 H 0.149 0.851 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.018 0.982 29 H -0.007 1.007 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.873 7.691 -10.704 13.490 hybrid contribution 0.245 -1.314 2.165 2.544 sum -2.628 6.377 -8.539 10.977 Atomic orbital electron populations 1.21781 0.94389 1.01711 1.01837 1.21492 0.95446 0.98207 0.87126 0.89910 1.59312 1.17925 1.20863 1.40373 1.22299 0.96716 0.98424 0.98710 1.20467 0.94227 0.95370 0.94638 1.19073 0.95041 0.92601 0.92650 1.21663 1.10407 1.22758 0.99731 0.92199 1.25836 0.96831 0.95626 1.01639 1.70109 1.29438 1.28471 1.29840 0.85649 0.79362 0.77848 0.79749 1.18608 1.21022 1.20952 1.21806 0.95487 0.99891 0.97455 1.21553 0.97049 0.96683 1.00577 1.21453 0.99290 0.96066 0.97641 1.21507 0.96131 0.99982 0.98156 1.21430 0.96660 0.94881 0.99984 0.92433 0.91500 0.93224 0.83546 0.85095 0.94538 0.93120 0.98186 1.00727 0.93368 0.93547 0.89795 0.90662 0.94528 0.90556 0.91868 0.91697 0.94458 0.91325 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.36 71.98 0.67 -2.86 16 2 C 0.09 2.48 2.76 44.92 0.12 2.61 16 3 H 0.08 2.29 5.77 -2.39 -0.01 2.28 16 4 N -0.85 -21.71 9.17 -168.67 -1.55 -23.26 16 5 C -0.12 -4.38 3.73 30.59 0.11 -4.26 16 6 C -0.05 -1.78 0.29 -52.18 -0.02 -1.79 16 7 C 0.04 2.19 3.35 29.85 0.10 2.29 16 8 C -0.51 -27.86 7.71 25.60 0.20 -27.66 16 9 H 0.06 3.19 5.71 -2.91 -0.02 3.18 16 10 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 11 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 12 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 13 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 C -0.11 -3.44 3.22 30.60 0.10 -3.34 16 17 C -0.12 -3.76 5.65 30.59 0.17 -3.59 16 18 C -0.11 -3.03 5.92 30.59 0.18 -2.85 16 19 C -0.12 -4.09 5.65 30.58 0.17 -3.91 16 20 C -0.09 -3.25 4.32 30.58 0.13 -3.11 16 21 H 0.06 1.44 8.12 -2.38 -0.02 1.42 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.35 8.58 5.07 -89.69 -0.45 8.12 16 25 H 0.34 8.30 8.87 -89.70 -0.80 7.51 16 26 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16 27 H 0.05 2.02 6.58 -2.39 -0.02 2.00 16 28 H 0.00 0.00 4.81 -2.39 -0.01 -0.01 16 29 H -0.03 -1.48 8.14 -2.39 -0.02 -1.50 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.05 1.51 7.93 -2.39 -0.02 1.49 16 32 H 0.08 2.24 5.28 -2.39 -0.01 2.23 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.38 6.47 -2.39 -0.02 1.37 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.55 6.39 -2.38 -0.02 1.54 16 39 H 0.07 2.04 6.29 -2.38 -0.01 2.02 16 40 H 0.04 1.73 6.64 -2.39 -0.02 1.71 16 Total: -1.00 -61.87 287.92 2.95 -58.92 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.23 Total: 22.77 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 2.41 Total: -48.19 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.26 Total: -80.33 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.87 2.95 -58.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.102 kcal (2) G-P(sol) polarization free energy of solvation -61.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds