Wall clock time and date at job start Mon Mar 30 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99686 * 2 1 4 4 C 1.46897 * 110.99885 * 123.95258 * 2 1 3 5 5 H 1.08994 * 109.47167 * 27.19688 * 4 2 1 6 6 C 1.53004 * 109.47416 * 267.19162 * 4 2 1 7 7 C 1.50698 * 109.46857 * 67.75040 * 6 4 2 8 8 H 1.07999 * 120.00263 * 4.61097 * 7 6 4 9 9 C 1.37877 * 120.00045 * 184.61597 * 7 6 4 10 10 N 1.31517 * 119.99886 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00220 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46813 * 90.00284 * 11 9 7 13 13 H 1.48501 * 109.47515 * 210.00258 * 11 9 7 14 14 H 1.48501 * 109.47000 * 330.00209 * 11 9 7 15 15 C 1.53001 * 109.46906 * 147.19184 * 4 2 1 16 16 C 1.52999 * 109.46994 * 53.65902 * 15 4 2 17 17 C 1.53005 * 109.47300 * 179.97438 * 16 15 4 18 18 C 1.53009 * 109.46867 * 59.99820 * 17 16 15 19 19 C 1.53000 * 109.46979 * 300.00364 * 18 17 16 20 20 C 1.52992 * 109.47404 * 60.00167 * 19 18 17 21 21 H 1.09001 * 109.47294 * 69.64243 * 1 2 3 22 22 H 1.08998 * 109.47092 * 309.64167 * 1 2 3 23 23 H 1.09004 * 109.47080 * 189.64232 * 1 2 3 24 24 H 1.09003 * 109.47288 * 53.28618 * 3 2 1 25 25 H 1.09005 * 109.46699 * 173.28307 * 3 2 1 26 26 H 1.08996 * 109.47115 * 293.28330 * 3 2 1 27 27 H 1.08993 * 109.46769 * 187.75031 * 6 4 2 28 28 H 1.08998 * 109.46858 * 307.75225 * 6 4 2 29 29 H 0.96996 * 120.00435 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.47103 * 173.65959 * 15 4 2 31 31 H 1.08998 * 109.47241 * 299.99972 * 16 15 4 32 32 H 1.09002 * 109.46934 * 60.00188 * 16 15 4 33 33 H 1.08998 * 109.47062 * 300.00219 * 17 16 15 34 34 H 1.08993 * 109.47497 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.46681 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.46954 * 60.00333 * 18 17 16 37 37 H 1.08998 * 109.47252 * 299.99786 * 19 18 17 38 38 H 1.08999 * 109.46868 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47369 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47227 * 59.99604 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.2723 -1.5279 1.4283 6 6 2.2442 0.1774 2.3163 7 6 0.9261 0.6924 2.8343 8 1 0.0006 0.3218 2.4189 9 6 0.9016 1.6369 3.8385 10 7 2.0286 2.0886 4.3439 11 14 -0.7322 2.2758 4.4801 12 1 -1.1875 1.4251 5.6089 13 1 -0.5666 3.6748 4.9499 14 1 -1.7414 2.2355 3.3914 15 6 3.3101 -1.4375 0.7356 16 6 4.2708 -0.3852 0.1784 17 6 5.5857 -1.0566 -0.2231 18 6 5.3119 -2.1150 -1.2936 19 6 4.3511 -3.1673 -0.7363 20 6 3.0363 -2.4959 -0.3349 21 1 -0.3634 0.3575 -0.9635 22 1 -0.3633 0.6556 0.7913 23 1 -0.3633 -1.0132 0.1721 24 1 1.5520 1.9309 0.8238 25 1 3.0785 1.3449 0.1202 26 1 1.7464 1.8562 -0.9439 27 1 2.7610 -0.3617 3.1102 28 1 2.8580 1.0159 1.9872 29 1 2.0114 2.7533 5.0501 30 1 3.7576 -1.9119 1.6089 31 1 3.8232 0.0892 -0.6950 32 1 4.4662 0.3685 0.9412 33 1 6.0331 -1.5307 0.6505 34 1 6.2700 -0.3070 -0.6205 35 1 6.2486 -2.5936 -1.5792 36 1 4.8645 -1.6409 -2.1672 37 1 4.7985 -3.6414 0.1373 38 1 4.1564 -3.9215 -1.4988 39 1 2.3517 -3.2456 0.0617 40 1 2.5889 -2.0217 -1.2085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:07 Heat of formation + Delta-G solvation = -16.663511 kcal Electronic energy + Delta-G solvation = -16974.376881 eV Core-core repulsion = 14595.229664 eV Total energy + Delta-G solvation = -2379.147218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.07094 -36.29835 -32.66623 -31.18810 -30.41698 -28.36279 -26.85704 -25.26581 -22.60897 -21.76148 -21.62623 -19.36503 -18.52048 -16.43848 -14.96867 -14.78083 -14.68418 -14.09471 -13.94391 -13.64135 -13.34400 -12.74383 -12.32839 -11.98795 -11.84192 -11.70091 -11.45792 -11.15825 -10.99802 -10.84388 -10.75147 -10.51538 -10.45956 -10.35644 -10.03676 -9.88442 -9.60401 -9.56597 -9.19524 -8.82980 -8.37907 -7.15101 -6.02809 -4.03958 3.27859 3.35036 3.37008 4.42174 4.99910 5.12757 5.17840 5.21452 5.33874 5.67924 5.75585 5.89802 5.95479 5.98286 5.99007 6.03432 6.06778 6.25962 6.35419 6.37491 6.46249 6.53179 6.56249 6.57001 6.69279 6.73267 6.74365 6.87331 6.90380 7.02613 7.11133 7.15865 7.56910 7.67100 7.91943 8.09603 8.18241 8.39661 9.02111 9.58781 11.07909 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039247 B = 0.007789 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.258795 B = 3593.797446 C = 3839.320856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.528 5.528 3 C 0.009 3.991 4 C 0.086 3.914 5 H 0.058 0.942 6 C -0.004 4.004 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.275 1.275 15 C -0.070 4.070 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.106 4.106 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.011 0.989 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -6.002 -9.478 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.251 5.251 3 C -0.139 4.139 4 C -0.022 4.022 5 H 0.076 0.924 6 C -0.042 4.042 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.713 3.287 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.089 4.089 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.143 4.143 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.663 -6.107 -9.782 12.099 hybrid contribution -1.187 0.801 1.324 1.950 sum 2.475 -5.306 -8.458 10.286 Atomic orbital electron populations 1.22492 0.89138 1.00953 1.00134 1.62299 1.06785 1.13686 1.42363 1.22727 1.01269 0.90091 0.99848 1.21855 0.94207 0.95794 0.90369 0.92362 1.19801 0.97256 0.94851 0.92280 1.21355 0.92893 1.22616 1.18899 0.92262 1.24989 0.95923 0.96661 0.96621 1.69960 1.25573 1.30449 1.27135 0.86707 0.84488 0.78205 0.79297 1.20732 1.21273 1.19957 1.21119 0.95825 0.95132 0.96794 1.21806 0.94045 0.98037 1.01355 1.21585 0.98186 0.97720 0.98296 1.21492 0.98401 0.96840 0.98503 1.21546 0.96753 0.97395 0.99922 1.21493 0.95677 0.97319 0.99851 0.93656 0.93153 0.93128 0.92517 0.90914 0.94348 0.97088 0.94729 0.93080 0.92251 0.90593 0.91831 0.92668 0.92885 0.93178 0.92253 0.92715 0.93029 0.93257 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.92 60.07 0.54 0.94 16 2 N -0.53 -10.15 4.01 -243.17 -0.97 -11.12 16 3 C 0.01 0.17 7.33 60.07 0.44 0.61 16 4 C 0.09 1.76 1.79 -67.71 -0.12 1.63 16 5 H 0.06 1.24 7.45 -51.93 -0.39 0.85 16 6 C 0.00 -0.10 3.54 -27.88 -0.10 -0.20 16 7 C -0.52 -14.00 6.82 -34.44 -0.23 -14.23 16 8 H 0.06 1.57 5.38 -52.49 -0.28 1.28 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 11 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.07 -1.22 2.00 -90.62 -0.18 -1.40 16 16 C -0.12 -1.91 3.45 -26.73 -0.09 -2.01 16 17 C -0.12 -1.69 5.92 -26.72 -0.16 -1.85 16 18 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 19 C -0.12 -1.55 5.92 -26.74 -0.16 -1.71 16 20 C -0.11 -1.61 5.10 -26.73 -0.14 -1.75 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 1.06 5.46 -51.93 -0.28 0.78 16 23 H 0.05 0.89 7.68 -51.93 -0.40 0.49 16 24 H 0.06 1.31 5.95 -51.93 -0.31 1.00 16 25 H 0.07 1.40 3.83 -51.93 -0.20 1.20 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.01 0.29 8.11 -51.93 -0.42 -0.13 16 28 H 0.03 0.90 4.86 -51.93 -0.25 0.65 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 31 H 0.08 1.28 5.92 -51.93 -0.31 0.98 16 32 H 0.06 1.18 6.27 -51.93 -0.33 0.86 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.13 7.80 -51.93 -0.40 0.73 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -27.84 288.74 -8.30 -36.14 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.93 Total: -0.25 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.46 Total: -20.02 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.24 Total: -36.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.84 -8.30 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.472 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds