Wall clock time and date at job start Mon Mar 30 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99686 * 2 1 4 4 C 1.46897 * 110.99885 * 123.95258 * 2 1 3 5 5 H 1.08994 * 109.47167 * 27.19688 * 4 2 1 6 6 C 1.53004 * 109.47416 * 267.19162 * 4 2 1 7 7 C 1.50698 * 109.46857 * 67.75040 * 6 4 2 8 8 H 1.07999 * 120.00263 * 4.61097 * 7 6 4 9 9 C 1.37877 * 120.00045 * 184.61597 * 7 6 4 10 10 N 1.31517 * 119.99886 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00220 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46813 * 90.00284 * 11 9 7 13 13 H 1.48501 * 109.47515 * 210.00258 * 11 9 7 14 14 H 1.48501 * 109.47000 * 330.00209 * 11 9 7 15 15 C 1.53001 * 109.46906 * 147.19184 * 4 2 1 16 16 C 1.52999 * 109.46994 * 53.65902 * 15 4 2 17 17 C 1.53005 * 109.47300 * 179.97438 * 16 15 4 18 18 C 1.53009 * 109.46867 * 59.99820 * 17 16 15 19 19 C 1.53000 * 109.46979 * 300.00364 * 18 17 16 20 20 C 1.52992 * 109.47404 * 60.00167 * 19 18 17 21 21 H 1.09001 * 109.47294 * 69.64243 * 1 2 3 22 22 H 1.08998 * 109.47092 * 309.64167 * 1 2 3 23 23 H 1.09004 * 109.47080 * 189.64232 * 1 2 3 24 24 H 1.09003 * 109.47288 * 53.28618 * 3 2 1 25 25 H 1.09005 * 109.46699 * 173.28307 * 3 2 1 26 26 H 1.08996 * 109.47115 * 293.28330 * 3 2 1 27 27 H 1.08993 * 109.46769 * 187.75031 * 6 4 2 28 28 H 1.08998 * 109.46858 * 307.75225 * 6 4 2 29 29 H 0.96996 * 120.00435 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.47103 * 173.65959 * 15 4 2 31 31 H 1.08998 * 109.47241 * 299.99972 * 16 15 4 32 32 H 1.09002 * 109.46934 * 60.00188 * 16 15 4 33 33 H 1.08998 * 109.47062 * 300.00219 * 17 16 15 34 34 H 1.08993 * 109.47497 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.46681 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.46954 * 60.00333 * 18 17 16 37 37 H 1.08998 * 109.47252 * 299.99786 * 19 18 17 38 38 H 1.08999 * 109.46868 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47369 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47227 * 59.99604 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.2723 -1.5279 1.4283 6 6 2.2442 0.1774 2.3163 7 6 0.9261 0.6924 2.8343 8 1 0.0006 0.3218 2.4189 9 6 0.9016 1.6369 3.8385 10 7 2.0286 2.0886 4.3439 11 14 -0.7322 2.2758 4.4801 12 1 -1.1875 1.4251 5.6089 13 1 -0.5666 3.6748 4.9499 14 1 -1.7414 2.2355 3.3914 15 6 3.3101 -1.4375 0.7356 16 6 4.2708 -0.3852 0.1784 17 6 5.5857 -1.0566 -0.2231 18 6 5.3119 -2.1150 -1.2936 19 6 4.3511 -3.1673 -0.7363 20 6 3.0363 -2.4959 -0.3349 21 1 -0.3634 0.3575 -0.9635 22 1 -0.3633 0.6556 0.7913 23 1 -0.3633 -1.0132 0.1721 24 1 1.5520 1.9309 0.8238 25 1 3.0785 1.3449 0.1202 26 1 1.7464 1.8562 -0.9439 27 1 2.7610 -0.3617 3.1102 28 1 2.8580 1.0159 1.9872 29 1 2.0114 2.7533 5.0501 30 1 3.7576 -1.9119 1.6089 31 1 3.8232 0.0892 -0.6950 32 1 4.4662 0.3685 0.9412 33 1 6.0331 -1.5307 0.6505 34 1 6.2700 -0.3070 -0.6205 35 1 6.2486 -2.5936 -1.5792 36 1 4.8645 -1.6409 -2.1672 37 1 4.7985 -3.6414 0.1373 38 1 4.1564 -3.9215 -1.4988 39 1 2.3517 -3.2456 0.0617 40 1 2.5889 -2.0217 -1.2085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:07 Heat of formation + Delta-G solvation = -32.167740 kcal Electronic energy + Delta-G solvation = -16975.049195 eV Core-core repulsion = 14595.229664 eV Total energy + Delta-G solvation = -2379.819532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55689 -37.70541 -34.76318 -32.64008 -31.63410 -30.19154 -28.42935 -27.00139 -24.37421 -23.09225 -22.99518 -20.63988 -20.12723 -18.53180 -16.64933 -16.49621 -16.19152 -15.59981 -15.47772 -14.88600 -14.66402 -14.37568 -14.07397 -13.53533 -13.31567 -13.13149 -13.05539 -12.88461 -12.55254 -12.44830 -12.33779 -12.24494 -11.97262 -11.72803 -11.59529 -11.47355 -11.23984 -11.00191 -10.66041 -10.55749 -10.49202 -8.85111 -8.18541 -6.26026 1.34968 1.35556 1.45363 2.37843 3.12999 3.41924 3.95197 3.97328 4.06098 4.37460 4.47194 4.56099 4.59877 4.68017 4.76372 4.78591 4.82906 4.85796 4.93813 4.96195 5.00966 5.13259 5.18959 5.21924 5.27458 5.36677 5.42702 5.43837 5.48686 5.53762 5.56135 5.58750 5.70350 5.79766 5.84563 6.25884 6.41687 6.47780 6.89013 7.40510 8.92466 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039247 B = 0.007789 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.258795 B = 3593.797446 C = 3839.320856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.515 5.515 3 C 0.016 3.984 4 C 0.094 3.906 5 H 0.049 0.951 6 C 0.006 3.994 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.950 3.050 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.265 1.265 15 C -0.068 4.068 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.098 4.098 21 H 0.072 0.928 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.064 0.936 27 H -0.024 1.024 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -6.938 -11.338 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.238 5.238 3 C -0.132 4.132 4 C -0.014 4.014 5 H 0.068 0.932 6 C -0.032 4.032 7 C -0.564 4.564 8 H 0.082 0.918 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.775 3.225 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.189 1.189 15 C -0.087 4.087 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.135 4.135 21 H 0.090 0.910 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.091 0.909 26 H 0.083 0.917 27 H -0.006 1.006 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.245 -7.054 -11.655 14.005 hybrid contribution -1.055 1.102 1.906 2.441 sum 2.190 -5.953 -9.749 11.631 Atomic orbital electron populations 1.22527 0.88439 1.01084 1.00605 1.62407 1.07331 1.13165 1.40871 1.22646 1.01089 0.89855 0.99595 1.21722 0.95729 0.94726 0.89261 0.93224 1.19683 0.95816 0.94752 0.92958 1.21722 0.93796 1.22227 1.18620 0.91810 1.25818 0.99295 0.97128 0.97092 1.70094 1.27799 1.31291 1.27911 0.85674 0.80437 0.77499 0.78842 1.20209 1.21071 1.18883 1.21064 0.94238 0.95962 0.97399 1.21690 0.95501 0.97222 1.00214 1.21564 0.96599 0.98445 0.98928 1.21478 0.99395 0.96188 0.97764 1.21533 0.95372 0.97786 1.00620 1.21404 0.97195 0.96453 0.98499 0.90955 0.95929 0.92105 0.96421 0.90878 0.91704 1.00564 0.96493 0.93126 0.93586 0.90575 0.94876 0.92977 0.91662 0.90983 0.91883 0.92700 0.90887 0.93185 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 8.92 127.69 1.14 1.93 16 2 N -0.51 -19.40 4.01 -923.26 -3.70 -23.10 16 3 C 0.02 0.64 7.33 127.69 0.94 1.58 16 4 C 0.09 3.89 1.79 44.92 0.08 3.97 16 5 H 0.05 2.12 7.45 -2.39 -0.02 2.11 16 6 C 0.01 0.30 3.54 29.85 0.11 0.41 16 7 C -0.53 -29.04 6.82 25.60 0.17 -28.87 16 8 H 0.06 3.41 5.38 -2.91 -0.02 3.39 16 9 C 0.00 0.25 5.46 84.65 0.46 0.71 16 10 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 11 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 15 C -0.07 -2.36 2.00 -10.79 -0.02 -2.38 16 16 C -0.11 -3.60 3.45 30.60 0.11 -3.49 16 17 C -0.12 -3.12 5.92 30.60 0.18 -2.93 16 18 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 19 C -0.12 -2.68 5.92 30.59 0.18 -2.50 16 20 C -0.10 -2.79 5.10 30.59 0.16 -2.64 16 21 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.02 0.93 5.46 -2.39 -0.01 0.92 16 23 H 0.06 2.04 7.68 -2.39 -0.02 2.02 16 24 H 0.02 0.82 5.95 -2.39 -0.01 0.81 16 25 H 0.07 2.85 3.83 -2.38 -0.01 2.84 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H -0.02 -1.39 8.11 -2.39 -0.02 -1.41 16 28 H 0.02 0.93 4.86 -2.39 -0.01 0.92 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 31 H 0.08 2.49 5.92 -2.39 -0.01 2.48 16 32 H 0.03 1.27 6.27 -2.39 -0.01 1.26 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 2.01 7.80 -2.39 -0.02 2.00 16 Total: -1.00 -60.81 288.74 3.28 -57.53 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.99 Total: 11.69 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 3.68 Total: -36.50 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.41 Total: -79.22 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -60.81 3.28 -57.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.360 kcal (2) G-P(sol) polarization free energy of solvation -60.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds