Wall clock time and date at job start Mon Mar 30 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46894 * 109.47473 * 2 1 4 4 C 1.48539 * 111.00338 * 176.21671 * 3 2 1 5 5 C 1.54933 * 103.22587 * 200.27770 * 4 3 2 6 6 C 1.54586 * 102.92599 * 37.41727 * 5 4 3 7 7 H 1.08995 * 110.31102 * 219.02471 * 6 5 4 8 8 C 1.50706 * 110.31088 * 96.95272 * 6 5 4 9 9 H 1.08001 * 119.99927 * 241.45573 * 8 6 5 10 10 C 1.37877 * 119.99679 * 61.45830 * 8 6 5 11 11 N 1.31511 * 119.99960 * 359.97438 * 10 8 6 12 12 Si 1.86791 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47602 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47323 * 120.00060 * 12 10 8 15 15 H 1.48505 * 109.47329 * 239.99788 * 12 10 8 16 16 C 1.47897 * 111.00227 * 58.82083 * 3 2 1 17 17 H 1.09006 * 109.91514 * 26.49186 * 16 3 2 18 18 C 1.53004 * 109.91797 * 265.19935 * 16 3 2 19 19 C 1.53000 * 109.46789 * 174.95813 * 18 16 3 20 20 C 1.53007 * 109.47048 * 174.31622 * 19 18 16 21 21 C 1.53005 * 109.47328 * 294.31397 * 19 18 16 22 22 H 1.09002 * 109.47188 * 53.47506 * 1 2 3 23 23 H 1.08994 * 109.47339 * 173.47409 * 1 2 3 24 24 H 1.09001 * 109.47417 * 293.48024 * 1 2 3 25 25 H 1.08999 * 109.47032 * 119.99913 * 2 1 3 26 26 H 1.08999 * 109.47558 * 239.99832 * 2 1 3 27 27 H 1.08995 * 110.66787 * 318.71552 * 4 3 2 28 28 H 1.09004 * 110.66085 * 81.84497 * 4 3 2 29 29 H 1.09010 * 110.71989 * 155.77684 * 5 4 3 30 30 H 1.09003 * 110.72670 * 279.05394 * 5 4 3 31 31 H 0.97002 * 119.99573 * 179.97438 * 11 10 8 32 32 H 1.08993 * 109.47124 * 294.95763 * 18 16 3 33 33 H 1.08995 * 109.46965 * 54.95908 * 18 16 3 34 34 H 1.08995 * 109.47820 * 54.31889 * 19 18 16 35 35 H 1.09004 * 109.46723 * 59.99444 * 20 19 18 36 36 H 1.08997 * 109.47432 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.46955 * 300.00706 * 20 19 18 38 38 H 1.09002 * 109.47047 * 305.36166 * 21 19 18 39 39 H 1.08994 * 109.46648 * 65.36200 * 21 19 18 40 40 H 1.08998 * 109.46977 * 185.35992 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.5017 1.4255 0.0915 5 6 3.7861 2.8606 0.6014 6 6 2.6296 3.1096 1.5965 7 1 2.2738 4.1365 1.5137 8 6 3.0817 2.8256 3.0058 9 1 2.5993 2.0496 3.5816 10 6 4.1112 3.5564 3.5599 11 7 4.6989 4.5010 2.8585 12 14 4.6712 3.2048 5.3069 13 1 3.8544 2.1031 5.8764 14 1 6.1019 2.8072 5.2976 15 1 4.5020 4.4252 6.1361 16 6 1.5225 2.1230 1.1813 17 1 1.3204 1.4273 1.9958 18 6 0.2495 2.8905 0.8186 19 6 -0.3253 3.5474 2.0751 20 6 -1.5151 4.4293 1.6907 21 6 -0.7881 2.4637 3.0511 22 1 -0.3634 0.6116 -0.8258 23 1 -0.3634 -1.0209 -0.1168 24 1 -0.3634 0.4095 0.9426 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.8635 0.6850 0.8047 28 1 3.9520 1.2693 -0.8888 29 1 4.7492 2.9053 1.1103 30 1 3.7492 3.5763 -0.2199 31 1 5.4229 5.0153 3.2486 32 1 0.4858 3.6588 0.0825 33 1 -0.4840 2.2008 0.4011 34 1 0.4422 4.1593 2.5488 35 1 -2.2827 3.8174 1.2169 36 1 -1.9250 4.8970 2.5859 37 1 -1.1855 5.2012 0.9953 38 1 -1.4851 1.7943 2.5469 39 1 0.0747 1.8954 3.3985 40 1 -1.2834 2.9295 3.9030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259691669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:07 Heat of formation + Delta-G solvation = -22.193132 kcal Electronic energy + Delta-G solvation = -17020.214363 eV Core-core repulsion = 14640.827363 eV Total energy + Delta-G solvation = -2379.387000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.77335 -35.29046 -33.59381 -31.56624 -29.32152 -27.86052 -26.66151 -25.72125 -23.34143 -21.97534 -20.13202 -19.54933 -18.25251 -16.49036 -15.08126 -14.95160 -14.40539 -14.11367 -13.85765 -13.41185 -12.91222 -12.43371 -12.37230 -12.30834 -11.84477 -11.62177 -11.25680 -11.22937 -10.97773 -10.88253 -10.73512 -10.50691 -10.35977 -10.11205 -10.05710 -9.92586 -9.74741 -9.63392 -8.95313 -8.73268 -8.32603 -7.58641 -5.99191 -4.03303 3.28448 3.37218 3.40312 4.43316 4.74945 5.31900 5.46318 5.50997 5.54125 5.59419 5.67738 5.83761 5.94696 6.04296 6.15068 6.17846 6.20973 6.26568 6.31887 6.32986 6.44170 6.45589 6.47162 6.55292 6.56424 6.69136 6.81067 6.89931 7.05476 7.14495 7.25666 7.38197 7.71511 7.75335 7.94908 7.98924 8.00856 8.51139 8.99548 9.60474 11.08393 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.011001 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.753286 B = 2544.622772 C = 3177.746365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 N -0.521 5.521 4 C 0.039 3.961 5 C -0.101 4.101 6 C 0.049 3.951 7 H 0.034 0.966 8 C -0.506 4.506 9 H 0.052 0.948 10 C 0.062 3.938 11 N -0.886 5.886 12 Si 0.884 3.116 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.071 3.929 17 H 0.047 0.953 18 C -0.096 4.096 19 C -0.099 4.099 20 C -0.142 4.142 21 C -0.141 4.141 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.828 -4.693 -3.475 9.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 N -0.246 5.246 4 C -0.089 4.089 5 C -0.140 4.140 6 C 0.030 3.970 7 H 0.052 0.948 8 C -0.545 4.545 9 H 0.070 0.930 10 C -0.139 4.139 11 N -0.525 5.525 12 Si 0.712 3.288 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.037 4.037 17 H 0.065 0.935 18 C -0.134 4.134 19 C -0.118 4.118 20 C -0.200 4.200 21 C -0.199 4.199 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.878 -4.339 -3.947 9.822 hybrid contribution 0.728 -0.611 1.727 1.971 sum -7.149 -4.950 -2.220 8.975 Atomic orbital electron populations 1.21943 0.95782 1.00513 1.02476 1.22122 0.95453 0.91232 0.99646 1.64711 1.07466 1.11181 1.41222 1.23169 0.87548 0.99749 0.98400 1.22403 1.02510 0.91720 0.97373 1.19509 0.89540 0.94203 0.93762 0.94762 1.21258 1.17058 1.18272 0.97903 0.92958 1.24940 0.96558 0.95155 0.97246 1.69983 1.24224 1.21933 1.36373 0.86664 0.78503 0.78150 0.85468 1.19900 1.21152 1.21070 1.22639 0.95684 0.95868 0.89483 0.93516 1.21696 0.96425 0.98857 0.96385 1.21120 0.97320 0.96871 0.96451 1.21828 0.98151 0.99406 1.00593 1.21819 1.00781 0.98715 0.98551 0.92064 0.93397 0.92172 0.95491 0.92003 0.94606 0.92480 0.90093 0.94538 0.93156 0.92519 0.92771 0.89586 0.93610 0.93426 0.93088 0.93972 0.91996 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.44 37.15 0.31 -1.85 16 2 C 0.04 0.74 5.53 -3.83 -0.02 0.72 16 3 N -0.52 -10.21 5.01 -222.58 -1.12 -11.32 16 4 C 0.04 0.80 6.56 -1.90 -0.01 0.79 16 5 C -0.10 -2.42 6.12 -24.88 -0.15 -2.57 16 6 C 0.05 1.19 1.94 -90.41 -0.18 1.02 16 7 H 0.03 0.92 6.97 -51.93 -0.36 0.56 16 8 C -0.51 -13.49 8.53 -34.44 -0.29 -13.78 16 9 H 0.05 1.40 7.35 -52.49 -0.39 1.02 16 10 C 0.06 1.70 5.08 -17.82 -0.09 1.61 16 11 N -0.89 -25.06 11.90 55.43 0.66 -24.40 16 12 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 C 0.07 1.47 1.46 -66.64 -0.10 1.37 16 17 H 0.05 1.02 5.05 -51.93 -0.26 0.76 16 18 C -0.10 -1.75 3.87 -26.73 -0.10 -1.85 16 19 C -0.10 -1.72 2.81 -90.61 -0.25 -1.97 16 20 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 21 C -0.14 -2.30 8.85 37.16 0.33 -1.97 16 22 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16 25 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 2.13 6.52 -51.92 -0.34 1.79 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.90 5.11 -51.93 -0.27 0.64 16 34 H 0.09 1.77 6.89 -51.93 -0.36 1.41 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -27.18 300.21 -8.39 -35.57 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.23 Total: -0.24 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -0.22 Total: -20.24 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.46 Total: -35.72 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.18 -8.39 -35.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.379 kcal (2) G-P(sol) polarization free energy of solvation -27.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds