Wall clock time and date at job start Mon Mar 30 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46894 * 109.47473 * 2 1 4 4 C 1.48539 * 111.00338 * 176.21671 * 3 2 1 5 5 C 1.54933 * 103.22587 * 200.27770 * 4 3 2 6 6 C 1.54586 * 102.92599 * 37.41727 * 5 4 3 7 7 H 1.08995 * 110.31102 * 219.02471 * 6 5 4 8 8 C 1.50706 * 110.31088 * 96.95272 * 6 5 4 9 9 H 1.08001 * 119.99927 * 241.45573 * 8 6 5 10 10 C 1.37877 * 119.99679 * 61.45830 * 8 6 5 11 11 N 1.31511 * 119.99960 * 359.97438 * 10 8 6 12 12 Si 1.86791 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47602 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47323 * 120.00060 * 12 10 8 15 15 H 1.48505 * 109.47329 * 239.99788 * 12 10 8 16 16 C 1.47897 * 111.00227 * 58.82083 * 3 2 1 17 17 H 1.09006 * 109.91514 * 26.49186 * 16 3 2 18 18 C 1.53004 * 109.91797 * 265.19935 * 16 3 2 19 19 C 1.53000 * 109.46789 * 174.95813 * 18 16 3 20 20 C 1.53007 * 109.47048 * 174.31622 * 19 18 16 21 21 C 1.53005 * 109.47328 * 294.31397 * 19 18 16 22 22 H 1.09002 * 109.47188 * 53.47506 * 1 2 3 23 23 H 1.08994 * 109.47339 * 173.47409 * 1 2 3 24 24 H 1.09001 * 109.47417 * 293.48024 * 1 2 3 25 25 H 1.08999 * 109.47032 * 119.99913 * 2 1 3 26 26 H 1.08999 * 109.47558 * 239.99832 * 2 1 3 27 27 H 1.08995 * 110.66787 * 318.71552 * 4 3 2 28 28 H 1.09004 * 110.66085 * 81.84497 * 4 3 2 29 29 H 1.09010 * 110.71989 * 155.77684 * 5 4 3 30 30 H 1.09003 * 110.72670 * 279.05394 * 5 4 3 31 31 H 0.97002 * 119.99573 * 179.97438 * 11 10 8 32 32 H 1.08993 * 109.47124 * 294.95763 * 18 16 3 33 33 H 1.08995 * 109.46965 * 54.95908 * 18 16 3 34 34 H 1.08995 * 109.47820 * 54.31889 * 19 18 16 35 35 H 1.09004 * 109.46723 * 59.99444 * 20 19 18 36 36 H 1.08997 * 109.47432 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.46955 * 300.00706 * 20 19 18 38 38 H 1.09002 * 109.47047 * 305.36166 * 21 19 18 39 39 H 1.08994 * 109.46648 * 65.36200 * 21 19 18 40 40 H 1.08998 * 109.46977 * 185.35992 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.5017 1.4255 0.0915 5 6 3.7861 2.8606 0.6014 6 6 2.6296 3.1096 1.5965 7 1 2.2738 4.1365 1.5137 8 6 3.0817 2.8256 3.0058 9 1 2.5993 2.0496 3.5816 10 6 4.1112 3.5564 3.5599 11 7 4.6989 4.5010 2.8585 12 14 4.6712 3.2048 5.3069 13 1 3.8544 2.1031 5.8764 14 1 6.1019 2.8072 5.2976 15 1 4.5020 4.4252 6.1361 16 6 1.5225 2.1230 1.1813 17 1 1.3204 1.4273 1.9958 18 6 0.2495 2.8905 0.8186 19 6 -0.3253 3.5474 2.0751 20 6 -1.5151 4.4293 1.6907 21 6 -0.7881 2.4637 3.0511 22 1 -0.3634 0.6116 -0.8258 23 1 -0.3634 -1.0209 -0.1168 24 1 -0.3634 0.4095 0.9426 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.8635 0.6850 0.8047 28 1 3.9520 1.2693 -0.8888 29 1 4.7492 2.9053 1.1103 30 1 3.7492 3.5763 -0.2199 31 1 5.4229 5.0153 3.2486 32 1 0.4858 3.6588 0.0825 33 1 -0.4840 2.2008 0.4011 34 1 0.4422 4.1593 2.5488 35 1 -2.2827 3.8174 1.2169 36 1 -1.9250 4.8970 2.5859 37 1 -1.1855 5.2012 0.9953 38 1 -1.4851 1.7943 2.5469 39 1 0.0747 1.8954 3.3985 40 1 -1.2834 2.9295 3.9030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:06 Heat of formation + Delta-G solvation = -37.408330 kcal Electronic energy + Delta-G solvation = -17020.874143 eV Core-core repulsion = 14640.827363 eV Total energy + Delta-G solvation = -2380.046781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41807 -36.71101 -35.43247 -33.33121 -30.91488 -29.48713 -27.93461 -27.52280 -25.11223 -23.40154 -21.92784 -21.01758 -19.89380 -18.46704 -16.89252 -16.57806 -16.15265 -15.64661 -15.25921 -14.94822 -14.32456 -14.18815 -13.90433 -13.76392 -13.23393 -13.10258 -12.91219 -12.81087 -12.62830 -12.39376 -12.27757 -12.18487 -11.95248 -11.87705 -11.75501 -11.42987 -11.39325 -11.12315 -10.75494 -10.69515 -10.41917 -9.18961 -8.10188 -6.20303 1.36261 1.39141 1.48969 2.41586 3.19352 3.22700 4.05538 4.14688 4.19764 4.27481 4.28490 4.37589 4.56429 4.59092 4.69246 4.73785 4.82969 4.85980 4.93644 4.95063 4.98812 5.03920 5.06504 5.17105 5.20519 5.25761 5.36061 5.40727 5.43700 5.49280 5.63983 5.65394 5.74395 5.89789 5.95352 6.10493 6.41688 6.48435 6.90369 7.46424 8.97100 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.011001 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.753286 B = 2544.622772 C = 3177.746365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 N -0.523 5.523 4 C 0.048 3.952 5 C -0.100 4.100 6 C 0.046 3.954 7 H 0.001 0.999 8 C -0.514 4.514 9 H 0.046 0.954 10 C 0.015 3.985 11 N -0.916 5.916 12 Si 0.944 3.056 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.083 3.917 17 H 0.036 0.964 18 C -0.088 4.088 19 C -0.099 4.099 20 C -0.136 4.136 21 C -0.136 4.136 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.018 0.982 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 -6.151 -3.781 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 N -0.247 5.247 4 C -0.080 4.080 5 C -0.139 4.139 6 C 0.027 3.973 7 H 0.019 0.981 8 C -0.553 4.553 9 H 0.064 0.936 10 C -0.183 4.183 11 N -0.555 5.555 12 Si 0.770 3.230 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.025 4.025 17 H 0.054 0.946 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.193 4.193 21 C -0.193 4.193 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.541 -5.809 -4.254 11.953 hybrid contribution 1.255 -0.152 1.802 2.201 sum -8.286 -5.961 -2.452 10.498 Atomic orbital electron populations 1.21897 0.93741 1.02411 1.02102 1.22279 0.97223 0.89159 1.00182 1.64780 1.06471 1.13308 1.40150 1.23062 0.88745 0.96959 0.99233 1.22255 1.00749 0.94080 0.96828 1.19438 0.91143 0.93451 0.93277 0.98117 1.21484 1.16905 1.17869 0.98995 0.93585 1.25644 0.96791 0.95074 1.00833 1.70102 1.24693 1.22812 1.37918 0.85720 0.78052 0.78064 0.81148 1.19309 1.20783 1.20753 1.22420 0.95411 0.94954 0.89725 0.94627 1.21637 0.95758 0.98614 0.96528 1.21073 0.97467 0.97185 0.96123 1.21761 0.97225 0.99115 1.01227 1.21756 1.00258 0.98407 0.98858 0.91701 0.90583 0.93026 0.96352 0.90011 0.95395 0.90069 0.93114 0.95092 0.93194 0.93838 0.90334 0.93798 0.91426 0.92364 0.93364 0.91598 0.94542 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.44 71.98 0.61 -3.06 16 2 C 0.04 1.23 5.53 86.30 0.48 1.70 16 3 N -0.52 -19.84 5.01 -858.09 -4.30 -24.14 16 4 C 0.05 1.95 6.56 86.65 0.57 2.52 16 5 C -0.10 -4.93 6.12 31.79 0.19 -4.74 16 6 C 0.05 2.32 1.94 -10.66 -0.02 2.30 16 7 H 0.00 0.04 6.97 -2.39 -0.02 0.02 16 8 C -0.51 -28.24 8.53 25.60 0.22 -28.02 16 9 H 0.05 2.53 7.35 -2.91 -0.02 2.51 16 10 C 0.02 0.85 5.08 84.66 0.43 1.28 16 11 N -0.92 -53.49 11.90 21.45 0.26 -53.23 16 12 Si 0.94 44.06 29.54 68.60 2.03 46.08 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 C 0.08 3.43 1.46 45.06 0.07 3.50 16 17 H 0.04 1.56 5.05 -2.38 -0.01 1.55 16 18 C -0.09 -3.14 3.87 30.60 0.12 -3.02 16 19 C -0.10 -3.43 2.81 -10.79 -0.03 -3.46 16 20 C -0.14 -3.73 9.19 71.98 0.66 -3.06 16 21 C -0.14 -4.23 8.85 71.98 0.64 -3.59 16 22 H 0.06 1.62 7.57 -2.39 -0.02 1.60 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.40 6.21 -2.39 -0.01 1.38 16 25 H 0.02 0.60 8.00 -2.39 -0.02 0.58 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.03 1.17 7.95 -2.39 -0.02 1.16 16 28 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 29 H 0.05 2.77 6.52 -2.38 -0.02 2.76 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.43 5.11 -2.39 -0.01 2.42 16 34 H 0.04 1.87 6.89 -2.39 -0.02 1.86 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 39 H 0.04 1.30 6.72 -2.39 -0.02 1.29 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -59.67 300.21 2.89 -56.79 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.97 Total: 12.14 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.93 Total: -37.64 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -4.04 Total: -77.37 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.67 2.89 -56.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.380 kcal (2) G-P(sol) polarization free energy of solvation -59.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds