Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46894 * 2 1 4 4 C 1.46902 * 110.99381 * 73.92976 * 3 2 1 5 5 C 1.53006 * 109.46617 * 199.55159 * 4 3 2 6 6 C 1.46897 * 110.99963 * 197.87988 * 3 2 1 7 7 H 1.08995 * 110.01618 * 199.73216 * 6 3 2 8 8 C 1.54265 * 110.03332 * 321.12757 * 6 3 2 9 9 C 1.54883 * 104.19795 * 142.94350 * 8 6 3 10 10 C 1.54889 * 102.74788 * 322.05256 * 9 8 6 11 11 C 1.53874 * 110.02984 * 78.34216 * 6 3 2 12 12 H 1.08994 * 110.03394 * 121.38268 * 11 6 3 13 13 C 1.53001 * 110.03562 * 359.95036 * 11 6 3 14 14 C 1.50701 * 109.47319 * 173.14318 * 13 11 6 15 15 H 1.07998 * 119.99670 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99838 * 180.02562 * 14 13 11 17 17 N 1.31522 * 120.00078 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00132 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46718 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47386 * 119.99726 * 18 16 14 21 21 H 1.48500 * 109.47345 * 240.00321 * 18 16 14 22 22 H 1.08995 * 109.47338 * 59.99909 * 1 2 3 23 23 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46994 * 299.99576 * 1 2 3 25 25 H 1.08999 * 109.46994 * 240.00424 * 2 1 3 26 26 H 1.08995 * 109.47338 * 120.00091 * 2 1 3 27 27 H 1.09001 * 109.47490 * 319.54896 * 4 3 2 28 28 H 1.08995 * 109.47084 * 79.55794 * 4 3 2 29 29 H 1.08999 * 109.47149 * 174.89150 * 5 4 3 30 30 H 1.08998 * 109.47235 * 294.89271 * 5 4 3 31 31 H 1.09007 * 109.46911 * 54.89092 * 5 4 3 32 32 H 1.08998 * 110.48457 * 261.61963 * 8 6 3 33 33 H 1.08999 * 110.48949 * 24.25606 * 8 6 3 34 34 H 1.08994 * 110.76098 * 80.36950 * 9 8 6 35 35 H 1.09003 * 110.76000 * 203.55430 * 9 8 6 36 36 H 1.09002 * 110.48953 * 156.61689 * 10 9 8 37 37 H 1.09000 * 110.48896 * 279.13165 * 10 9 8 38 38 H 1.09002 * 109.46840 * 293.14660 * 13 11 6 39 39 H 1.09005 * 109.46780 * 53.13728 * 13 11 6 40 40 H 0.97002 * 120.00005 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8371 2.0078 1.3179 5 6 1.8865 3.5302 1.1737 6 6 3.4257 1.4464 -0.4211 7 1 3.8728 2.3846 -0.0929 8 6 4.2065 0.2539 0.1690 9 6 5.2004 -0.1411 -0.9513 10 6 4.3619 0.0588 -2.2382 11 6 3.5233 1.3229 -1.9517 12 1 4.0179 2.2012 -2.3664 13 6 2.1255 1.1737 -2.5558 14 6 2.2200 1.2230 -4.0590 15 1 3.1810 1.3479 -4.5358 16 6 1.0797 1.1088 -4.8255 17 7 -0.0906 0.9573 -4.2447 18 14 1.1968 1.1692 -6.6888 19 1 2.6156 1.3459 -7.0901 20 1 0.6748 -0.0987 -7.2590 21 1 0.3931 2.3091 -7.1987 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8715 1.7129 1.7286 28 1 2.6322 1.6804 1.9877 29 1 1.6612 3.9937 2.1342 30 1 2.8823 3.8324 0.8492 31 1 1.1512 3.8493 0.4349 32 1 4.7448 0.5572 1.0669 33 1 3.5312 -0.5730 0.3890 34 1 6.0676 0.5192 -0.9489 35 1 5.5085 -1.1812 -0.8454 36 1 5.0135 0.2198 -3.0970 37 1 3.7134 -0.8007 -2.4084 38 1 1.6975 0.2191 -2.2497 39 1 1.4894 1.9863 -2.2048 40 1 -0.8929 0.8766 -4.7840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259728568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = -5.377149 kcal Electronic energy + Delta-G solvation = -17001.137600 eV Core-core repulsion = 14622.479796 eV Total energy + Delta-G solvation = -2378.657804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32684 -35.22511 -32.85120 -31.40295 -29.98354 -29.09692 -26.01441 -25.47738 -22.76752 -21.99997 -21.31613 -19.34021 -17.95474 -16.47347 -15.33589 -15.19260 -14.37022 -14.27008 -13.98933 -13.69427 -13.24922 -12.64132 -12.12514 -12.05791 -11.83630 -11.39536 -11.28989 -11.06119 -10.93708 -10.88283 -10.79128 -10.61643 -10.45205 -10.33728 -10.06051 -10.02024 -9.86099 -9.32239 -8.89656 -8.63840 -8.12859 -7.49732 -5.82229 -3.81338 3.38582 3.46482 3.50216 4.44968 4.59464 5.18428 5.22806 5.34850 5.50779 5.53089 5.58998 5.67000 5.83204 5.86949 6.00797 6.05800 6.08938 6.13807 6.21062 6.24347 6.30646 6.31310 6.37879 6.46213 6.58990 6.62216 6.69880 6.77256 6.92585 7.06775 7.18129 7.37943 7.78063 7.85953 7.96794 8.20845 8.35537 8.67964 9.28381 9.80011 11.28141 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.009383 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.515141 B = 2983.547882 C = 3477.086267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.512 5.512 4 C 0.047 3.953 5 C -0.144 4.144 6 C 0.083 3.917 7 H 0.068 0.932 8 C -0.161 4.161 9 C -0.124 4.124 10 C -0.107 4.107 11 C -0.079 4.079 12 H 0.056 0.944 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.048 0.952 16 C 0.057 3.943 17 N -0.892 5.892 18 Si 0.880 3.120 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.287 1.287 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.093 0.907 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -0.673 10.612 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.234 5.234 4 C -0.081 4.081 5 C -0.202 4.202 6 C -0.026 4.026 7 H 0.087 0.913 8 C -0.200 4.200 9 C -0.162 4.162 10 C -0.145 4.145 11 C -0.098 4.098 12 H 0.074 0.926 13 C 0.003 3.997 14 C -0.553 4.553 15 H 0.067 0.933 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.709 3.291 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.213 1.213 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.847 -0.411 10.238 11.335 hybrid contribution 0.524 -0.395 -0.488 0.818 sum 5.371 -0.805 9.750 11.161 Atomic orbital electron populations 1.21783 0.95283 1.00643 1.02658 1.22295 0.95847 0.89213 1.00245 1.62234 1.18490 1.17691 1.25025 1.22088 1.00048 0.95364 0.90575 1.21755 1.02260 0.95268 1.00908 1.22506 0.86447 0.96340 0.97296 0.91346 1.23158 0.98906 1.00150 0.97808 1.22457 0.97600 0.99790 0.96348 1.22367 0.97507 0.99262 0.95378 1.21888 1.00379 0.96176 0.91346 0.92582 1.19208 0.89291 0.98288 0.92944 1.21477 0.92642 1.48406 0.92741 0.93343 1.24946 0.95681 0.95999 0.97675 1.69982 0.97723 1.51012 1.34517 0.86728 0.77848 0.77357 0.87165 1.20028 1.21338 1.21312 0.90036 0.93434 0.94109 0.88893 0.96446 0.91403 0.95872 0.93344 0.93149 0.91511 0.93184 0.90771 0.92443 0.92727 0.92623 0.91674 0.95686 0.94813 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.00 37.16 0.37 -2.18 16 2 C 0.05 0.90 3.12 -3.82 -0.01 0.89 16 3 N -0.51 -9.11 2.84 -225.31 -0.64 -9.74 16 4 C 0.05 0.71 5.45 -3.82 -0.02 0.69 16 5 C -0.14 -2.03 9.96 37.16 0.37 -1.66 16 6 C 0.08 1.45 2.73 -66.60 -0.18 1.27 16 7 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 8 C -0.16 -2.48 5.81 -25.08 -0.15 -2.62 16 9 C -0.12 -1.89 6.91 -24.74 -0.17 -2.06 16 10 C -0.11 -2.01 5.88 -25.01 -0.15 -2.16 16 11 C -0.08 -1.63 2.66 -89.44 -0.24 -1.87 16 12 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 13 C 0.04 1.00 3.14 -27.88 -0.09 0.91 16 14 C -0.51 -14.46 8.73 -34.44 -0.30 -14.76 16 15 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 18 Si 0.88 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.63 6.65 -51.93 -0.35 0.29 16 25 H 0.09 1.85 5.01 -51.93 -0.26 1.59 16 26 H 0.02 0.28 6.74 -51.93 -0.35 -0.07 16 27 H 0.07 0.98 6.37 -51.93 -0.33 0.65 16 28 H 0.02 0.33 7.79 -51.93 -0.40 -0.08 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.71 6.91 -51.93 -0.36 0.35 16 31 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.16 5.04 -51.93 -0.26 0.90 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.31 7.69 -51.93 -0.40 0.91 16 38 H 0.03 0.66 4.91 -51.93 -0.25 0.40 16 39 H 0.03 0.94 7.48 -51.93 -0.39 0.55 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -28.91 297.30 -8.14 -37.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.04 Total: -0.85 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.66 Total: -22.01 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.10 Total: -35.62 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.91 -8.14 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259728568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.672 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds