Wall clock time and date at job start Mon Mar 30 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46894 * 2 1 4 4 C 1.46902 * 110.99381 * 73.92976 * 3 2 1 5 5 C 1.53006 * 109.46617 * 199.55159 * 4 3 2 6 6 C 1.46897 * 110.99963 * 197.87988 * 3 2 1 7 7 H 1.08995 * 110.01618 * 199.73216 * 6 3 2 8 8 C 1.54265 * 110.03332 * 321.12757 * 6 3 2 9 9 C 1.54883 * 104.19795 * 142.94350 * 8 6 3 10 10 C 1.54889 * 102.74788 * 322.05256 * 9 8 6 11 11 C 1.53874 * 110.02984 * 78.34216 * 6 3 2 12 12 H 1.08994 * 110.03394 * 121.38268 * 11 6 3 13 13 C 1.53001 * 110.03562 * 359.95036 * 11 6 3 14 14 C 1.50701 * 109.47319 * 173.14318 * 13 11 6 15 15 H 1.07998 * 119.99670 * 0.02562 * 14 13 11 16 16 C 1.37871 * 119.99838 * 180.02562 * 14 13 11 17 17 N 1.31522 * 120.00078 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00132 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46718 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47386 * 119.99726 * 18 16 14 21 21 H 1.48500 * 109.47345 * 240.00321 * 18 16 14 22 22 H 1.08995 * 109.47338 * 59.99909 * 1 2 3 23 23 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46994 * 299.99576 * 1 2 3 25 25 H 1.08999 * 109.46994 * 240.00424 * 2 1 3 26 26 H 1.08995 * 109.47338 * 120.00091 * 2 1 3 27 27 H 1.09001 * 109.47490 * 319.54896 * 4 3 2 28 28 H 1.08995 * 109.47084 * 79.55794 * 4 3 2 29 29 H 1.08999 * 109.47149 * 174.89150 * 5 4 3 30 30 H 1.08998 * 109.47235 * 294.89271 * 5 4 3 31 31 H 1.09007 * 109.46911 * 54.89092 * 5 4 3 32 32 H 1.08998 * 110.48457 * 261.61963 * 8 6 3 33 33 H 1.08999 * 110.48949 * 24.25606 * 8 6 3 34 34 H 1.08994 * 110.76098 * 80.36950 * 9 8 6 35 35 H 1.09003 * 110.76000 * 203.55430 * 9 8 6 36 36 H 1.09002 * 110.48953 * 156.61689 * 10 9 8 37 37 H 1.09000 * 110.48896 * 279.13165 * 10 9 8 38 38 H 1.09002 * 109.46840 * 293.14660 * 13 11 6 39 39 H 1.09005 * 109.46780 * 53.13728 * 13 11 6 40 40 H 0.97002 * 120.00005 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8371 2.0078 1.3179 5 6 1.8865 3.5302 1.1737 6 6 3.4257 1.4464 -0.4211 7 1 3.8728 2.3846 -0.0929 8 6 4.2065 0.2539 0.1690 9 6 5.2004 -0.1411 -0.9513 10 6 4.3619 0.0588 -2.2382 11 6 3.5233 1.3229 -1.9517 12 1 4.0179 2.2012 -2.3664 13 6 2.1255 1.1737 -2.5558 14 6 2.2200 1.2230 -4.0590 15 1 3.1810 1.3479 -4.5358 16 6 1.0797 1.1088 -4.8255 17 7 -0.0906 0.9573 -4.2447 18 14 1.1968 1.1692 -6.6888 19 1 2.6156 1.3459 -7.0901 20 1 0.6748 -0.0987 -7.2590 21 1 0.3931 2.3091 -7.1987 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8715 1.7129 1.7286 28 1 2.6322 1.6804 1.9877 29 1 1.6612 3.9937 2.1342 30 1 2.8823 3.8324 0.8492 31 1 1.1512 3.8493 0.4349 32 1 4.7448 0.5572 1.0669 33 1 3.5312 -0.5730 0.3890 34 1 6.0676 0.5192 -0.9489 35 1 5.5085 -1.1812 -0.8454 36 1 5.0135 0.2198 -3.0970 37 1 3.7134 -0.8007 -2.4084 38 1 1.6975 0.2191 -2.2497 39 1 1.4894 1.9863 -2.2048 40 1 -0.8929 0.8766 -4.7840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259728568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:30 Heat of formation + Delta-G solvation = -21.080888 kcal Electronic energy + Delta-G solvation = -17001.818565 eV Core-core repulsion = 14622.479796 eV Total energy + Delta-G solvation = -2379.338770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74667 -36.63360 -34.93282 -32.73419 -31.77425 -30.44343 -27.62759 -27.14405 -24.36187 -23.60266 -22.65212 -20.83084 -19.41558 -18.47388 -16.86051 -16.79809 -16.20245 -15.62508 -15.44068 -15.04818 -14.54347 -14.29471 -14.05733 -13.46698 -13.25282 -13.13329 -12.89989 -12.62527 -12.48056 -12.30730 -12.28358 -12.22564 -12.06326 -11.76694 -11.61590 -11.49600 -11.27295 -11.07926 -10.72573 -10.64019 -10.29798 -8.82229 -8.04451 -6.11118 1.38820 1.40125 1.51564 2.47230 3.14470 3.27131 3.87059 3.89365 4.07638 4.24782 4.30288 4.39026 4.53337 4.63013 4.67732 4.72351 4.78455 4.79920 4.88413 4.89866 4.94564 5.05251 5.11510 5.15146 5.19385 5.25644 5.36801 5.40070 5.45756 5.53781 5.59845 5.61434 5.75933 6.15834 6.20023 6.44352 6.46879 6.58517 7.10770 7.54157 9.05429 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.009383 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.515141 B = 2983.547882 C = 3477.086267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.539 5.539 4 C 0.048 3.952 5 C -0.140 4.140 6 C 0.087 3.913 7 H 0.077 0.923 8 C -0.152 4.152 9 C -0.112 4.112 10 C -0.106 4.106 11 C -0.081 4.081 12 H 0.042 0.958 13 C 0.058 3.942 14 C -0.533 4.533 15 H 0.045 0.955 16 C 0.004 3.996 17 N -0.924 5.924 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.283 1.283 22 H 0.033 0.967 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.011 0.989 39 H -0.003 1.003 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -0.975 11.933 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 N -0.263 5.263 4 C -0.079 4.079 5 C -0.198 4.198 6 C -0.022 4.022 7 H 0.095 0.905 8 C -0.191 4.191 9 C -0.150 4.150 10 C -0.144 4.144 11 C -0.100 4.100 12 H 0.060 0.940 13 C 0.021 3.979 14 C -0.571 4.571 15 H 0.063 0.937 16 C -0.194 4.194 17 N -0.565 5.565 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.209 1.209 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.015 0.985 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.334 -0.711 11.564 13.204 hybrid contribution 0.025 -0.270 -0.905 0.945 sum 6.360 -0.981 10.659 12.451 Atomic orbital electron populations 1.21688 0.95619 1.01047 1.01206 1.22139 0.95494 0.89363 0.99929 1.62123 1.18845 1.17981 1.27315 1.22146 1.01013 0.95451 0.89311 1.21725 1.01361 0.95041 1.01632 1.22398 0.87004 0.98011 0.94785 0.90476 1.23079 0.98606 0.98811 0.98593 1.22398 0.97379 1.01491 0.93694 1.22269 0.97373 0.97254 0.97509 1.21800 0.97626 0.96649 0.93957 0.93988 1.18917 0.91452 0.95934 0.91620 1.21896 0.92542 1.48095 0.94599 0.93658 1.25760 0.95388 0.95740 1.02476 1.70121 0.98347 1.51804 1.36232 0.85685 0.78122 0.77487 0.81440 1.19213 1.20675 1.20907 0.94807 0.92143 0.92030 0.91883 0.93733 0.90880 0.93901 0.90538 0.93270 0.94137 0.90493 0.90974 0.90761 0.90779 0.93121 0.93772 0.97128 0.98490 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 10.00 71.98 0.72 -4.16 16 2 C 0.06 2.02 3.12 86.30 0.27 2.29 16 3 N -0.54 -18.97 2.84 -866.74 -2.46 -21.43 16 4 C 0.05 1.35 5.45 86.30 0.47 1.82 16 5 C -0.14 -3.74 9.96 71.98 0.72 -3.03 16 6 C 0.09 2.94 2.73 45.64 0.12 3.07 16 7 H 0.08 2.47 6.56 -2.39 -0.02 2.46 16 8 C -0.15 -4.21 5.81 31.67 0.18 -4.02 16 9 C -0.11 -3.10 6.91 31.88 0.22 -2.88 16 10 C -0.11 -3.95 5.88 31.71 0.19 -3.76 16 11 C -0.08 -3.40 2.66 -10.03 -0.03 -3.43 16 12 H 0.04 1.83 8.13 -2.39 -0.02 1.82 16 13 C 0.06 3.04 3.14 29.85 0.09 3.14 16 14 C -0.53 -30.96 8.73 25.60 0.22 -30.74 16 15 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 16 C 0.00 0.21 5.46 84.65 0.46 0.68 16 17 N -0.92 -56.99 13.29 21.45 0.28 -56.71 16 18 Si 0.95 45.88 29.54 68.60 2.03 47.90 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.06 1.87 6.65 -2.39 -0.02 1.85 16 25 H 0.06 2.57 5.01 -2.39 -0.01 2.56 16 26 H 0.04 1.31 6.74 -2.39 -0.02 1.29 16 27 H 0.07 1.95 6.37 -2.39 -0.02 1.93 16 28 H 0.04 1.05 7.79 -2.39 -0.02 1.03 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.31 6.91 -2.39 -0.02 1.29 16 31 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.04 5.04 -2.39 -0.01 2.03 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.80 7.69 -2.39 -0.02 1.78 16 38 H 0.01 0.59 4.91 -2.39 -0.01 0.58 16 39 H 0.00 -0.20 7.48 -2.38 -0.02 -0.21 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.27 297.30 4.48 -59.79 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.98 Total: 11.47 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.64 Total: -41.04 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.17 Total: -78.14 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -64.27 4.48 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259728568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.714 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds