Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46980 * 2 1 4 4 C 1.46849 * 111.00177 * 71.13852 * 3 2 1 5 5 C 1.53034 * 109.52480 * 174.16043 * 4 3 2 6 6 C 1.53118 * 109.27911 * 59.17968 * 5 4 3 7 7 C 1.53122 * 109.15827 * 302.34367 * 6 5 4 8 8 H 1.08998 * 109.50864 * 297.67530 * 7 6 5 9 9 C 1.50706 * 109.50348 * 177.59512 * 7 6 5 10 10 H 1.07997 * 120.00139 * 271.67670 * 9 7 6 11 11 C 1.37881 * 119.99549 * 91.67381 * 9 7 6 12 12 N 1.31513 * 119.99389 * 180.02562 * 11 9 7 13 13 Si 1.86796 * 120.00295 * 0.02562 * 11 9 7 14 14 H 1.48501 * 109.47240 * 269.99770 * 13 11 9 15 15 H 1.48505 * 109.47026 * 29.99707 * 13 11 9 16 16 H 1.48494 * 109.47149 * 149.99707 * 13 11 9 17 17 C 1.46850 * 111.00096 * 306.92642 * 3 2 1 18 18 H 1.09001 * 109.46028 * 65.82842 * 17 3 2 19 19 C 1.52994 * 109.46342 * 305.85730 * 17 3 2 20 20 C 1.53002 * 109.47514 * 164.99718 * 19 17 3 21 21 C 1.53000 * 109.47078 * 284.99692 * 19 17 3 22 22 H 1.09001 * 109.46941 * 184.79951 * 1 2 3 23 23 H 1.08998 * 109.47466 * 304.79860 * 1 2 3 24 24 H 1.08999 * 109.47334 * 64.80328 * 1 2 3 25 25 H 1.08999 * 109.47164 * 239.99937 * 2 1 3 26 26 H 1.09000 * 109.46715 * 120.00205 * 2 1 3 27 27 H 1.09005 * 109.46019 * 54.13960 * 4 3 2 28 28 H 1.09008 * 109.45842 * 294.17524 * 4 3 2 29 29 H 1.09001 * 109.50438 * 299.23618 * 5 4 3 30 30 H 1.08998 * 109.50121 * 179.11976 * 5 4 3 31 31 H 1.08998 * 109.52028 * 182.44410 * 6 5 4 32 32 H 1.08996 * 109.52601 * 62.24999 * 6 5 4 33 33 H 0.97003 * 120.00131 * 180.02562 * 12 11 9 34 34 H 1.09009 * 109.47295 * 44.99608 * 19 17 3 35 35 H 1.08996 * 109.46872 * 70.52372 * 20 19 17 36 36 H 1.08998 * 109.47411 * 190.52726 * 20 19 17 37 37 H 1.09007 * 109.46864 * 310.52786 * 20 19 17 38 38 H 1.09004 * 109.47295 * 171.90068 * 21 19 17 39 39 H 1.08990 * 109.47325 * 291.90382 * 21 19 17 40 40 H 1.09003 * 109.47267 * 51.90473 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7772 2.0289 1.2973 5 6 2.4269 3.4144 1.3100 6 6 1.8342 4.2611 0.1802 7 6 2.0576 3.5450 -1.1547 8 1 3.1271 3.4466 -1.3405 9 6 1.4252 4.3430 -2.2657 10 1 0.3905 4.1782 -2.5277 11 6 2.1677 5.2836 -2.9477 12 7 1.6157 5.9804 -3.9170 13 14 3.9575 5.5682 -2.4951 14 1 4.0427 6.6208 -1.4511 15 1 4.5432 4.3066 -1.9749 16 1 4.7095 6.0034 -3.6993 17 6 1.4185 2.1557 -1.0959 18 1 0.3468 2.2559 -0.9242 19 6 1.6565 1.4286 -2.4209 20 6 0.7339 2.0094 -3.4944 21 6 3.1143 1.6113 -2.8481 22 1 -0.3633 -1.0241 0.0860 23 1 -0.3634 0.5865 0.8438 24 1 -0.3634 0.4375 -0.9299 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2073 1.4187 2.0916 28 1 0.7037 2.1296 1.4578 29 1 3.5023 3.3134 1.1634 30 1 2.2335 3.8983 2.2673 31 1 2.3251 5.2340 0.1582 32 1 0.7655 4.3949 0.3474 33 1 2.1381 6.6418 -4.3971 34 1 1.4449 0.3666 -2.2957 35 1 1.0657 3.0148 -3.7533 36 1 0.7651 1.3767 -4.3814 37 1 -0.2864 2.0504 -3.1130 38 1 3.3219 0.9788 -3.7113 39 1 3.2876 2.6544 -3.1120 40 1 3.7720 1.3305 -2.0255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259734077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -7.989254 kcal Electronic energy + Delta-G solvation = -17577.702974 eV Core-core repulsion = 15198.931900 eV Total energy + Delta-G solvation = -2378.771074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.37344 -34.71457 -34.01928 -31.98719 -29.31311 -28.62885 -26.32507 -25.29430 -24.04896 -21.89167 -20.71723 -19.54296 -17.82784 -16.74629 -15.34030 -15.10152 -14.23809 -13.99920 -13.93499 -13.25391 -13.05779 -12.69856 -12.59009 -12.12383 -11.98223 -11.70021 -11.51236 -11.16702 -11.04415 -10.94966 -10.63209 -10.50160 -10.31160 -10.12703 -9.96538 -9.85766 -9.61446 -9.22496 -9.00907 -8.72545 -8.30421 -7.60290 -6.02699 -3.95796 3.32267 3.41434 3.44563 4.46566 4.51062 5.24643 5.32950 5.41506 5.55120 5.65575 5.70449 5.80195 5.87598 5.93570 6.01859 6.11362 6.14598 6.24029 6.36398 6.41086 6.47855 6.55282 6.58917 6.64558 6.70488 6.87160 6.93159 6.94880 6.99436 7.06003 7.32276 7.37951 7.52291 7.72668 7.78598 7.82642 7.98306 8.59578 9.00372 9.59552 11.09363 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.012528 C = 0.010455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.413678 B = 2234.431894 C = 2677.550105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 N -0.537 5.537 4 C 0.062 3.938 5 C -0.121 4.121 6 C -0.116 4.116 7 C 0.011 3.989 8 H 0.054 0.946 9 C -0.493 4.493 10 H 0.079 0.921 11 C 0.071 3.929 12 N -0.903 5.903 13 Si 0.863 3.137 14 H -0.280 1.280 15 H -0.255 1.255 16 H -0.292 1.292 17 C 0.105 3.895 18 H 0.032 0.968 19 C -0.069 4.069 20 C -0.158 4.158 21 C -0.139 4.139 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.262 0.738 34 H 0.047 0.953 35 H 0.117 0.883 36 H 0.024 0.976 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -9.147 7.035 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.066 4.066 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.008 4.008 8 H 0.072 0.928 9 C -0.531 4.531 10 H 0.097 0.903 11 C -0.130 4.130 12 N -0.542 5.542 13 Si 0.691 3.309 14 H -0.206 1.206 15 H -0.180 1.180 16 H -0.218 1.218 17 C -0.002 4.002 18 H 0.050 0.950 19 C -0.088 4.088 20 C -0.215 4.215 21 C -0.196 4.196 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.324 -9.011 6.820 11.378 hybrid contribution -0.052 0.271 0.406 0.491 sum 1.272 -8.740 7.226 11.412 Atomic orbital electron populations 1.22435 0.98832 1.01221 1.02456 1.22137 0.92571 0.91538 1.01684 1.62199 1.58914 1.01405 1.03531 1.21971 0.97831 0.95600 0.91178 1.21685 1.00554 0.94911 0.98731 1.21917 0.99487 0.98143 0.95892 1.19480 0.98243 0.90228 0.92882 0.92762 1.20986 0.99389 1.18094 1.14665 0.90318 1.24951 0.97658 0.95570 0.94823 1.69893 1.36691 1.24794 1.22782 0.87078 0.86685 0.79173 0.77920 1.20596 1.17970 1.21826 1.21759 0.95677 0.94371 0.88401 0.94962 1.20921 0.96126 0.97019 0.94728 1.22364 0.97877 1.05144 0.96153 1.21830 0.96163 1.02477 0.99166 0.93058 0.93012 0.91801 0.90619 0.92019 0.92269 0.95547 0.92100 0.93129 0.93268 0.93317 0.92818 0.93471 0.86477 0.95715 0.94717 0.95003 0.91125 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 8.95 37.16 0.33 -2.33 16 2 C 0.05 0.72 5.49 -3.82 -0.02 0.70 16 3 N -0.54 -9.39 4.47 -226.69 -1.01 -10.41 16 4 C 0.06 1.02 5.16 -3.83 -0.02 1.00 16 5 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 6 C -0.12 -2.43 5.19 -26.61 -0.14 -2.56 16 7 C 0.01 0.24 0.82 -91.69 -0.08 0.17 16 8 H 0.05 1.29 3.48 -51.93 -0.18 1.11 16 9 C -0.49 -12.74 5.07 -34.44 -0.17 -12.91 16 10 H 0.08 2.22 6.79 -52.49 -0.36 1.86 16 11 C 0.07 1.94 5.35 -17.82 -0.10 1.84 16 12 N -0.90 -26.42 13.96 55.43 0.77 -25.64 16 13 Si 0.86 21.06 25.88 -169.99 -4.40 16.66 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.25 -5.98 5.89 56.52 0.33 -5.65 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 C 0.11 2.09 0.68 -67.72 -0.05 2.04 16 18 H 0.03 0.68 6.46 -51.93 -0.34 0.35 16 19 C -0.07 -1.33 2.13 -90.62 -0.19 -1.53 16 20 C -0.16 -3.25 7.91 37.16 0.29 -2.96 16 21 C -0.14 -2.74 8.01 37.16 0.30 -2.44 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.73 6.67 -51.93 -0.35 0.38 16 24 H 0.06 0.99 6.21 -51.93 -0.32 0.67 16 25 H 0.08 1.11 6.32 -51.93 -0.33 0.79 16 26 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 27 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 28 H 0.03 0.43 6.82 -51.92 -0.35 0.08 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.07 7.45 -51.93 -0.39 0.68 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.05 0.83 5.37 -51.92 -0.28 0.55 16 35 H 0.12 2.85 4.86 -51.93 -0.25 2.59 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.69 7.95 -51.93 -0.41 0.28 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.57 5.03 -51.93 -0.26 1.31 16 40 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16 LS Contribution 279.72 15.07 4.22 4.22 Total: -1.00 -27.09 279.72 -7.22 -34.31 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.80 Total: 2.12 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 0.00 Total: -21.27 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.24 Total: -36.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.40 Total: 16.66 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.09 -7.22 -34.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.326 kcal (2) G-P(sol) polarization free energy of solvation -27.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds