Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46980 * 2 1 4 4 C 1.46849 * 111.00177 * 71.13852 * 3 2 1 5 5 C 1.53034 * 109.52480 * 174.16043 * 4 3 2 6 6 C 1.53118 * 109.27911 * 59.17968 * 5 4 3 7 7 C 1.53122 * 109.15827 * 302.34367 * 6 5 4 8 8 H 1.08998 * 109.50864 * 297.67530 * 7 6 5 9 9 C 1.50706 * 109.50348 * 177.59512 * 7 6 5 10 10 H 1.07997 * 120.00139 * 271.67670 * 9 7 6 11 11 C 1.37881 * 119.99549 * 91.67381 * 9 7 6 12 12 N 1.31513 * 119.99389 * 180.02562 * 11 9 7 13 13 Si 1.86796 * 120.00295 * 0.02562 * 11 9 7 14 14 H 1.48501 * 109.47240 * 269.99770 * 13 11 9 15 15 H 1.48505 * 109.47026 * 29.99707 * 13 11 9 16 16 H 1.48494 * 109.47149 * 149.99707 * 13 11 9 17 17 C 1.46850 * 111.00096 * 306.92642 * 3 2 1 18 18 H 1.09001 * 109.46028 * 65.82842 * 17 3 2 19 19 C 1.52994 * 109.46342 * 305.85730 * 17 3 2 20 20 C 1.53002 * 109.47514 * 164.99718 * 19 17 3 21 21 C 1.53000 * 109.47078 * 284.99692 * 19 17 3 22 22 H 1.09001 * 109.46941 * 184.79951 * 1 2 3 23 23 H 1.08998 * 109.47466 * 304.79860 * 1 2 3 24 24 H 1.08999 * 109.47334 * 64.80328 * 1 2 3 25 25 H 1.08999 * 109.47164 * 239.99937 * 2 1 3 26 26 H 1.09000 * 109.46715 * 120.00205 * 2 1 3 27 27 H 1.09005 * 109.46019 * 54.13960 * 4 3 2 28 28 H 1.09008 * 109.45842 * 294.17524 * 4 3 2 29 29 H 1.09001 * 109.50438 * 299.23618 * 5 4 3 30 30 H 1.08998 * 109.50121 * 179.11976 * 5 4 3 31 31 H 1.08998 * 109.52028 * 182.44410 * 6 5 4 32 32 H 1.08996 * 109.52601 * 62.24999 * 6 5 4 33 33 H 0.97003 * 120.00131 * 180.02562 * 12 11 9 34 34 H 1.09009 * 109.47295 * 44.99608 * 19 17 3 35 35 H 1.08996 * 109.46872 * 70.52372 * 20 19 17 36 36 H 1.08998 * 109.47411 * 190.52726 * 20 19 17 37 37 H 1.09007 * 109.46864 * 310.52786 * 20 19 17 38 38 H 1.09004 * 109.47295 * 171.90068 * 21 19 17 39 39 H 1.08990 * 109.47325 * 291.90382 * 21 19 17 40 40 H 1.09003 * 109.47267 * 51.90473 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7772 2.0289 1.2973 5 6 2.4269 3.4144 1.3100 6 6 1.8342 4.2611 0.1802 7 6 2.0576 3.5450 -1.1547 8 1 3.1271 3.4466 -1.3405 9 6 1.4252 4.3430 -2.2657 10 1 0.3905 4.1782 -2.5277 11 6 2.1677 5.2836 -2.9477 12 7 1.6157 5.9804 -3.9170 13 14 3.9575 5.5682 -2.4951 14 1 4.0427 6.6208 -1.4511 15 1 4.5432 4.3066 -1.9749 16 1 4.7095 6.0034 -3.6993 17 6 1.4185 2.1557 -1.0959 18 1 0.3468 2.2559 -0.9242 19 6 1.6565 1.4286 -2.4209 20 6 0.7339 2.0094 -3.4944 21 6 3.1143 1.6113 -2.8481 22 1 -0.3633 -1.0241 0.0860 23 1 -0.3634 0.5865 0.8438 24 1 -0.3634 0.4375 -0.9299 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2073 1.4187 2.0916 28 1 0.7037 2.1296 1.4578 29 1 3.5023 3.3134 1.1634 30 1 2.2335 3.8983 2.2673 31 1 2.3251 5.2340 0.1582 32 1 0.7655 4.3949 0.3474 33 1 2.1381 6.6418 -4.3971 34 1 1.4449 0.3666 -2.2957 35 1 1.0657 3.0148 -3.7533 36 1 0.7651 1.3767 -4.3814 37 1 -0.2864 2.0504 -3.1130 38 1 3.3219 0.9788 -3.7113 39 1 3.2876 2.6544 -3.1120 40 1 3.7720 1.3305 -2.0255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259734077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -24.608393 kcal Electronic energy + Delta-G solvation = -17578.423634 eV Core-core repulsion = 15198.931900 eV Total energy + Delta-G solvation = -2379.491734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87158 -36.28525 -35.55197 -33.91132 -30.88917 -30.00039 -27.98335 -27.10974 -25.40974 -23.48221 -22.20921 -21.09084 -19.49700 -18.67571 -16.89072 -16.53875 -15.84104 -15.68156 -15.36709 -14.85760 -14.60928 -14.41446 -14.15448 -13.64342 -13.35974 -13.20712 -13.07209 -12.89579 -12.51105 -12.48902 -12.31925 -11.96551 -11.91747 -11.71131 -11.66394 -11.45166 -11.37810 -10.92030 -10.71538 -10.67478 -10.21105 -8.97830 -8.15702 -6.09103 1.35261 1.39757 1.47764 2.42251 3.13566 3.23351 4.04217 4.15039 4.17478 4.22823 4.38290 4.45902 4.49307 4.55668 4.66524 4.71985 4.78945 4.82778 4.98209 5.00033 5.05019 5.05968 5.12166 5.13485 5.24449 5.30173 5.33148 5.36581 5.41813 5.46203 5.66370 5.69599 5.78497 5.83198 6.05247 6.32132 6.47448 6.56846 6.90225 7.47865 8.99970 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.012528 C = 0.010455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.413678 B = 2234.431894 C = 2677.550105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 N -0.544 5.544 4 C 0.062 3.938 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.010 3.990 8 H 0.047 0.953 9 C -0.471 4.471 10 H 0.044 0.956 11 C 0.019 3.981 12 N -0.951 5.951 13 Si 0.913 3.087 14 H -0.278 1.278 15 H -0.238 1.238 16 H -0.296 1.296 17 C 0.116 3.884 18 H 0.015 0.985 19 C -0.067 4.067 20 C -0.151 4.151 21 C -0.135 4.135 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -11.551 9.082 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.080 4.080 3 N -0.268 5.268 4 C -0.066 4.066 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.010 4.010 8 H 0.065 0.935 9 C -0.510 4.510 10 H 0.062 0.938 11 C -0.177 4.177 12 N -0.593 5.593 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.162 1.162 16 H -0.223 1.223 17 C 0.008 3.992 18 H 0.033 0.967 19 C -0.086 4.086 20 C -0.208 4.208 21 C -0.192 4.192 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.365 -11.438 8.894 14.681 hybrid contribution -0.474 0.964 -0.224 1.097 sum 1.891 -10.475 8.671 13.729 Atomic orbital electron populations 1.22371 0.98381 1.02494 1.01182 1.22244 0.92905 0.89724 1.03081 1.62148 1.58884 1.02529 1.03211 1.22046 0.97956 0.95257 0.91347 1.21637 1.00208 0.95219 0.98205 1.21828 0.99070 0.98049 0.96655 1.19433 0.97454 0.91703 0.92360 0.93519 1.21122 0.97735 1.17348 1.14746 0.93833 1.25562 1.01170 0.95884 0.95034 1.70029 1.38173 1.26352 1.24771 0.86264 0.82723 0.79626 0.77403 1.20428 1.16161 1.22305 1.21444 0.94411 0.93368 0.89981 0.96675 1.20931 0.95560 0.98272 0.93831 1.22184 0.97899 1.03154 0.97586 1.21761 0.96336 1.00845 1.00239 0.90646 0.93312 0.93941 0.90387 0.89464 0.89156 0.95620 0.92144 0.90557 0.94791 0.94296 0.93173 0.90856 0.90622 0.93911 0.95168 0.93075 0.94263 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.59 8.95 71.98 0.64 -3.95 16 2 C 0.05 1.21 5.49 86.31 0.47 1.69 16 3 N -0.54 -17.30 4.47 -871.10 -3.90 -21.20 16 4 C 0.06 1.78 5.16 86.32 0.45 2.23 16 5 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 6 C -0.12 -4.83 5.19 30.67 0.16 -4.67 16 7 C 0.01 0.43 0.82 -11.48 -0.01 0.42 16 8 H 0.05 2.17 3.48 -2.39 -0.01 2.16 16 9 C -0.47 -25.14 5.07 25.60 0.13 -25.01 16 10 H 0.04 2.59 6.79 -2.91 -0.02 2.57 16 11 C 0.02 1.10 5.35 84.66 0.45 1.55 16 12 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 13 Si 0.91 44.11 25.88 68.60 1.78 45.89 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 15 H -0.24 -10.71 5.89 99.48 0.59 -10.13 16 16 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 17 C 0.12 4.46 0.68 44.94 0.03 4.49 16 18 H 0.02 0.64 6.46 -2.39 -0.02 0.63 16 19 C -0.07 -2.50 2.13 -10.80 -0.02 -2.52 16 20 C -0.15 -6.24 7.91 71.98 0.57 -5.67 16 21 C -0.13 -5.06 8.01 71.98 0.58 -4.49 16 22 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.05 1.23 6.67 -2.39 -0.02 1.21 16 24 H 0.04 1.23 6.21 -2.39 -0.01 1.21 16 25 H 0.08 1.96 6.32 -2.39 -0.02 1.94 16 26 H 0.09 1.82 7.97 -2.39 -0.02 1.80 16 27 H 0.09 2.12 8.00 -2.38 -0.02 2.10 16 28 H 0.03 0.76 6.82 -2.38 -0.02 0.74 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.03 1.46 7.45 -2.39 -0.02 1.44 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.07 2.37 5.37 -2.38 -0.01 2.35 16 35 H 0.08 3.82 4.86 -2.39 -0.01 3.80 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.22 7.95 -2.38 -0.02 1.21 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.04 1.71 5.03 -2.39 -0.01 1.70 16 40 H 0.06 2.08 7.94 -2.39 -0.02 2.06 16 Total: -1.00 -60.07 279.72 2.69 -57.38 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.88 Total: 15.20 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 3.63 Total: -39.42 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -3.60 Total: -79.06 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.78 Total: 45.89 kcal Total: -60.07 2.69 -57.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259734077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.773 kcal (2) G-P(sol) polarization free energy of solvation -60.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds