Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 C 1.50695 * 109.46976 * 239.99336 * 2 1 3 5 5 H 1.08001 * 120.00379 * 239.99651 * 4 2 1 6 6 C 1.37886 * 120.00103 * 60.00916 * 4 2 1 7 7 N 1.31515 * 119.99316 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00337 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47421 * 59.99411 * 8 6 4 10 10 H 1.48497 * 109.46937 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46741 * 299.99283 * 8 6 4 12 12 C 1.53003 * 109.46714 * 119.99892 * 2 1 3 13 13 H 1.08995 * 109.46881 * 179.97438 * 12 2 1 14 14 C 1.53006 * 109.47129 * 59.99806 * 12 2 1 15 15 N 1.46896 * 109.47085 * 300.00185 * 12 2 1 16 16 C 1.48005 * 110.99629 * 311.15547 * 15 12 2 17 17 C 1.50448 * 112.82387 * 191.34916 * 16 15 12 18 18 C 1.54310 * 108.49932 * 93.73103 * 17 16 15 19 19 C 1.45874 * 112.18365 * 281.45673 * 18 17 16 20 20 C 1.54313 * 112.18262 * 61.12514 * 19 18 17 21 21 C 1.48004 * 110.99983 * 182.44327 * 15 12 2 22 22 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46979 * 300.00559 * 1 2 3 24 24 H 1.09007 * 109.46720 * 60.00136 * 1 2 3 25 25 H 0.97002 * 119.99644 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.46875 * 53.21637 * 14 12 2 27 27 H 1.08999 * 109.46618 * 173.20988 * 14 12 2 28 28 H 1.08995 * 109.47080 * 293.21084 * 14 12 2 29 29 H 1.08994 * 108.81261 * 312.20997 * 16 15 12 30 30 H 1.09002 * 108.81325 * 70.49012 * 16 15 12 31 31 H 1.08997 * 109.63595 * 334.02420 * 17 16 15 32 32 H 1.09002 * 109.62913 * 213.43536 * 17 16 15 33 33 H 1.09011 * 108.93537 * 160.76751 * 18 17 16 34 34 H 1.08997 * 108.94144 * 42.15927 * 18 17 16 35 35 H 1.08998 * 108.94368 * 300.42582 * 19 18 17 36 36 H 1.09000 * 108.94000 * 181.82016 * 19 18 17 37 37 H 1.09000 * 109.63293 * 161.75600 * 20 19 18 38 38 H 1.09007 * 109.63271 * 41.16436 * 20 19 18 39 39 H 1.08999 * 108.80777 * 205.69630 * 21 15 12 40 40 H 1.09000 * 108.80658 * 323.96760 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4828 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0081 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 6 2.0400 -0.7213 1.2493 13 1 3.1299 -0.7217 1.2491 14 6 1.5299 -2.1638 1.2493 15 7 1.5502 -0.0288 2.4487 16 6 1.7943 1.4281 2.3566 17 6 1.5624 2.1422 3.6604 18 6 2.9084 2.2460 4.4079 19 6 3.2712 0.9954 5.0654 20 6 3.4383 -0.1639 4.0607 21 6 2.0722 -0.6650 3.6788 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 0.7085 1.1608 -3.4844 26 1 1.7907 -2.6414 0.3049 27 1 1.9890 -2.7114 2.0724 28 1 0.4467 -2.1661 1.3708 29 1 2.8255 1.5927 2.0443 30 1 1.1294 1.8490 1.6024 31 1 0.8505 1.5798 4.2645 32 1 1.1732 3.1417 3.4663 33 1 2.8361 3.0326 5.1591 34 1 3.6894 2.5106 3.6951 35 1 2.4926 0.7334 5.7817 36 1 4.2097 1.1369 5.6015 37 1 4.0080 -0.9699 4.5231 38 1 3.9589 0.1936 3.1722 39 1 1.3823 -0.4640 4.4983 40 1 2.1241 -1.7425 3.5222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259779291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -12.286343 kcal Electronic energy + Delta-G solvation = -16934.529118 eV Core-core repulsion = 14555.571709 eV Total energy + Delta-G solvation = -2378.957409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18521 -35.91494 -33.06003 -31.85210 -30.75875 -28.01365 -25.87773 -25.00116 -24.36011 -22.35886 -20.30622 -19.81703 -17.91749 -16.28305 -15.66202 -15.29634 -14.64613 -14.15095 -14.00088 -13.39763 -13.12213 -12.85303 -12.46123 -12.20512 -11.86173 -11.56635 -11.27973 -11.10829 -10.90484 -10.80384 -10.63201 -10.55991 -10.45389 -10.22309 -10.18676 -9.96848 -9.78353 -9.48031 -8.97202 -8.66658 -8.20309 -7.37195 -5.90894 -3.96349 3.34861 3.39637 3.41934 4.43588 4.58923 4.86390 4.96674 5.18215 5.39282 5.42367 5.54520 5.71181 5.81583 5.83543 5.97487 6.07985 6.12114 6.21398 6.23964 6.29338 6.35056 6.39997 6.46666 6.54918 6.65259 6.71081 6.84744 6.95568 7.17322 7.21845 7.41948 7.54281 7.82212 7.86066 7.99437 8.11837 8.34918 8.57209 9.06766 9.67135 11.14831 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040465 B = 0.007386 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.794053 B = 3789.978689 C = 3983.886864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.051 3.949 3 H 0.024 0.976 4 C -0.510 4.510 5 H 0.054 0.946 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.094 3.906 13 H 0.021 0.979 14 C -0.132 4.132 15 N -0.540 5.540 16 C 0.064 3.936 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.149 4.149 21 C 0.054 3.946 22 H 0.023 0.977 23 H 0.018 0.982 24 H 0.071 0.929 25 H 0.258 0.742 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 0.229 12.484 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.033 3.967 3 H 0.042 0.958 4 C -0.549 4.549 5 H 0.072 0.928 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.014 4.014 13 H 0.039 0.961 14 C -0.189 4.189 15 N -0.265 5.265 16 C -0.063 4.063 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.188 4.188 21 C -0.074 4.074 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.886 0.302 12.356 12.503 hybrid contribution 1.301 -0.357 -0.932 1.640 sum 3.188 -0.055 11.425 11.861 Atomic orbital electron populations 1.21696 0.98174 0.98896 0.99730 1.18721 0.93377 0.95161 0.89484 0.95792 1.21173 1.30869 1.12179 0.90701 0.92818 1.24929 0.95220 0.95012 0.98769 1.69899 1.36831 1.22976 1.23140 0.86741 0.79097 0.79864 0.82751 1.20352 1.21391 1.20477 1.21741 0.95332 0.94137 0.90159 0.96145 1.21836 1.01172 0.95611 1.00294 1.61966 1.60601 1.02148 1.01829 1.21728 0.99751 0.87881 0.96917 1.21454 0.96824 1.00267 0.97145 1.20608 0.98070 0.97464 0.99681 1.20515 1.00749 0.95610 0.98132 1.21932 0.99494 0.97954 0.99427 1.21918 0.93171 0.98978 0.93327 0.95757 0.96335 0.91032 0.93156 0.91413 0.95386 0.92448 0.95454 0.90173 0.91106 0.91681 0.92771 0.92403 0.92360 0.93029 0.92199 0.91680 0.92022 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.25 37.16 0.31 -2.84 16 2 C 0.05 1.28 1.59 -91.77 -0.15 1.13 16 3 H 0.02 0.65 6.54 -51.93 -0.34 0.31 16 4 C -0.51 -13.96 7.74 -34.44 -0.27 -14.23 16 5 H 0.05 1.45 6.74 -52.49 -0.35 1.09 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.09 1.97 1.81 -67.71 -0.12 1.85 16 13 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 14 C -0.13 -2.60 8.23 37.16 0.31 -2.29 16 15 N -0.54 -9.91 3.89 -227.91 -0.89 -10.80 16 16 C 0.06 1.14 3.69 -4.49 -0.02 1.13 16 17 C -0.12 -1.69 5.63 -27.32 -0.15 -1.84 16 18 C -0.12 -1.51 5.30 -29.42 -0.16 -1.67 16 19 C -0.11 -1.35 5.30 -29.42 -0.16 -1.51 16 20 C -0.15 -2.05 5.57 -27.32 -0.15 -2.20 16 21 C 0.05 0.83 5.00 -4.49 -0.02 0.80 16 22 H 0.02 0.58 6.59 -51.93 -0.34 0.24 16 23 H 0.02 0.41 6.73 -51.93 -0.35 0.06 16 24 H 0.07 1.96 6.07 -51.92 -0.32 1.64 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.07 1.43 6.42 -51.93 -0.33 1.09 16 27 H 0.03 0.47 6.37 -51.93 -0.33 0.14 16 28 H 0.06 1.14 6.81 -51.93 -0.35 0.79 16 29 H 0.03 0.51 6.48 -51.93 -0.34 0.18 16 30 H 0.08 1.60 5.99 -51.93 -0.31 1.29 16 31 H 0.07 1.00 7.08 -51.93 -0.37 0.64 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 35 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.03 6.61 -51.92 -0.34 0.69 16 39 H 0.06 0.89 6.59 -51.93 -0.34 0.54 16 40 H 0.07 1.04 5.69 -51.93 -0.30 0.74 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -27.82 283.81 -8.40 -36.22 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.72 Total: -1.02 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.67 Total: -20.05 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.26 Total: -35.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.82 -8.40 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.933 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds