Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 C 1.50695 * 109.46976 * 239.99336 * 2 1 3 5 5 H 1.08001 * 120.00379 * 239.99651 * 4 2 1 6 6 C 1.37886 * 120.00103 * 60.00916 * 4 2 1 7 7 N 1.31515 * 119.99316 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00337 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47421 * 59.99411 * 8 6 4 10 10 H 1.48497 * 109.46937 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46741 * 299.99283 * 8 6 4 12 12 C 1.53003 * 109.46714 * 119.99892 * 2 1 3 13 13 H 1.08995 * 109.46881 * 179.97438 * 12 2 1 14 14 C 1.53006 * 109.47129 * 59.99806 * 12 2 1 15 15 N 1.46896 * 109.47085 * 300.00185 * 12 2 1 16 16 C 1.48005 * 110.99629 * 311.15547 * 15 12 2 17 17 C 1.50448 * 112.82387 * 191.34916 * 16 15 12 18 18 C 1.54310 * 108.49932 * 93.73103 * 17 16 15 19 19 C 1.45874 * 112.18365 * 281.45673 * 18 17 16 20 20 C 1.54313 * 112.18262 * 61.12514 * 19 18 17 21 21 C 1.48004 * 110.99983 * 182.44327 * 15 12 2 22 22 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46979 * 300.00559 * 1 2 3 24 24 H 1.09007 * 109.46720 * 60.00136 * 1 2 3 25 25 H 0.97002 * 119.99644 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.46875 * 53.21637 * 14 12 2 27 27 H 1.08999 * 109.46618 * 173.20988 * 14 12 2 28 28 H 1.08995 * 109.47080 * 293.21084 * 14 12 2 29 29 H 1.08994 * 108.81261 * 312.20997 * 16 15 12 30 30 H 1.09002 * 108.81325 * 70.49012 * 16 15 12 31 31 H 1.08997 * 109.63595 * 334.02420 * 17 16 15 32 32 H 1.09002 * 109.62913 * 213.43536 * 17 16 15 33 33 H 1.09011 * 108.93537 * 160.76751 * 18 17 16 34 34 H 1.08997 * 108.94144 * 42.15927 * 18 17 16 35 35 H 1.08998 * 108.94368 * 300.42582 * 19 18 17 36 36 H 1.09000 * 108.94000 * 181.82016 * 19 18 17 37 37 H 1.09000 * 109.63293 * 161.75600 * 20 19 18 38 38 H 1.09007 * 109.63271 * 41.16436 * 20 19 18 39 39 H 1.08999 * 108.80777 * 205.69630 * 21 15 12 40 40 H 1.09000 * 108.80658 * 323.96760 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4828 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0081 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 6 2.0400 -0.7213 1.2493 13 1 3.1299 -0.7217 1.2491 14 6 1.5299 -2.1638 1.2493 15 7 1.5502 -0.0288 2.4487 16 6 1.7943 1.4281 2.3566 17 6 1.5624 2.1422 3.6604 18 6 2.9084 2.2460 4.4079 19 6 3.2712 0.9954 5.0654 20 6 3.4383 -0.1639 4.0607 21 6 2.0722 -0.6650 3.6788 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 0.7085 1.1608 -3.4844 26 1 1.7907 -2.6414 0.3049 27 1 1.9890 -2.7114 2.0724 28 1 0.4467 -2.1661 1.3708 29 1 2.8255 1.5927 2.0443 30 1 1.1294 1.8490 1.6024 31 1 0.8505 1.5798 4.2645 32 1 1.1732 3.1417 3.4663 33 1 2.8361 3.0326 5.1591 34 1 3.6894 2.5106 3.6951 35 1 2.4926 0.7334 5.7817 36 1 4.2097 1.1369 5.6015 37 1 4.0080 -0.9699 4.5231 38 1 3.9589 0.1936 3.1722 39 1 1.3823 -0.4640 4.4983 40 1 2.1241 -1.7425 3.5222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259779291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -27.796781 kcal Electronic energy + Delta-G solvation = -16935.201701 eV Core-core repulsion = 14555.571709 eV Total energy + Delta-G solvation = -2379.629992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54494 -37.48059 -34.85707 -33.10493 -32.48604 -29.75159 -27.30932 -27.01040 -25.69956 -24.03536 -21.57816 -21.16448 -19.55896 -18.21167 -17.07021 -16.93787 -16.22612 -15.82148 -15.41708 -14.77075 -14.47727 -14.32345 -13.97858 -13.65961 -13.30479 -13.15392 -13.01739 -12.86597 -12.63910 -12.51013 -12.39013 -12.01123 -11.96455 -11.71692 -11.49420 -11.38813 -11.33407 -10.99229 -10.84274 -10.71601 -10.31185 -8.87604 -8.04843 -6.17458 1.41410 1.42575 1.49912 2.44278 3.11621 3.22767 3.81917 3.90451 4.05556 4.25637 4.34256 4.43276 4.52634 4.55638 4.63152 4.75081 4.78658 4.88077 4.93137 5.08670 5.12197 5.13475 5.18168 5.24788 5.27154 5.30484 5.39577 5.40908 5.46601 5.46889 5.51656 5.63661 5.67187 6.01585 6.11241 6.36657 6.53100 6.57036 6.94960 7.49646 8.99872 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040465 B = 0.007386 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.794053 B = 3789.978689 C = 3983.886864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.053 3.947 3 H -0.009 1.009 4 C -0.527 4.527 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.103 3.897 13 H 0.005 0.995 14 C -0.123 4.123 15 N -0.546 5.546 16 C 0.071 3.929 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.147 4.147 21 C 0.053 3.947 22 H 0.024 0.976 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.258 0.742 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.008 0.992 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -0.610 14.285 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.034 3.966 3 H 0.009 0.991 4 C -0.565 4.565 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.005 4.005 13 H 0.023 0.977 14 C -0.181 4.181 15 N -0.271 5.271 16 C -0.056 4.056 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.186 4.186 21 C -0.074 4.074 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.322 -0.544 14.175 14.374 hybrid contribution 1.168 -0.067 -1.468 1.877 sum 3.490 -0.611 12.707 13.192 Atomic orbital electron populations 1.21478 0.98010 0.98485 0.98781 1.18623 0.93359 0.93614 0.91021 0.99094 1.21536 1.30807 1.12288 0.91897 0.92800 1.25711 0.95460 0.95734 1.01784 1.70047 1.37853 1.24254 1.23673 0.85739 0.78664 0.78947 0.79068 1.19500 1.21126 1.19903 1.21458 0.94258 0.94849 0.89902 0.97679 1.21728 1.01066 0.94629 1.00639 1.61913 1.60882 1.02281 1.02020 1.21651 0.97684 0.87988 0.98298 1.21418 0.98242 1.00176 0.95221 1.20580 0.96329 0.98778 0.99764 1.20508 1.02195 0.94294 0.97739 1.21893 0.98292 0.99328 0.99044 1.22030 0.94490 0.98819 0.92053 0.95650 0.95149 0.93969 0.93255 0.93104 0.92332 0.92722 0.97346 0.93464 0.90414 0.90832 0.90348 0.93783 0.90848 0.91308 0.90346 0.94383 0.90209 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.56 8.25 71.98 0.59 -4.97 16 2 C 0.05 2.70 1.59 -11.54 -0.02 2.68 16 3 H -0.01 -0.52 6.54 -2.39 -0.02 -0.53 16 4 C -0.53 -29.42 7.74 25.60 0.20 -29.22 16 5 H 0.05 2.94 6.74 -2.91 -0.02 2.92 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -54.49 11.32 21.45 0.24 -54.25 16 8 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.10 4.39 1.81 44.92 0.08 4.48 16 13 H 0.01 0.24 7.70 -2.39 -0.02 0.22 16 14 C -0.12 -4.75 8.23 71.98 0.59 -4.15 16 15 N -0.55 -19.76 3.89 -874.98 -3.40 -23.16 16 16 C 0.07 2.57 3.69 85.26 0.31 2.88 16 17 C -0.11 -3.03 5.63 30.21 0.17 -2.86 16 18 C -0.12 -2.66 5.30 28.85 0.15 -2.51 16 19 C -0.11 -2.28 5.30 28.85 0.15 -2.13 16 20 C -0.15 -3.71 5.57 30.21 0.17 -3.55 16 21 C 0.05 1.51 5.00 85.26 0.43 1.93 16 22 H 0.02 1.23 6.59 -2.39 -0.02 1.21 16 23 H 0.03 1.41 6.73 -2.39 -0.02 1.39 16 24 H 0.04 2.37 6.07 -2.38 -0.01 2.36 16 25 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.05 2.11 6.42 -2.39 -0.02 2.10 16 27 H 0.06 1.88 6.37 -2.39 -0.02 1.86 16 28 H 0.05 2.11 6.81 -2.39 -0.02 2.10 16 29 H 0.01 0.33 6.48 -2.39 -0.02 0.31 16 30 H 0.05 1.98 5.99 -2.39 -0.01 1.97 16 31 H 0.08 2.00 7.08 -2.39 -0.02 1.98 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.04 1.12 7.52 -2.39 -0.02 1.11 16 35 H 0.07 1.35 7.52 -2.39 -0.02 1.33 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.18 6.61 -2.38 -0.02 1.16 16 39 H 0.08 2.01 6.59 -2.39 -0.02 2.00 16 40 H 0.07 1.95 5.69 -2.39 -0.01 1.94 16 Total: -1.00 -60.72 283.81 3.15 -57.57 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.00 Total: 9.73 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 3.28 Total: -36.33 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -3.16 Total: -77.40 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.72 3.15 -57.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259779291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.775 kcal (2) G-P(sol) polarization free energy of solvation -60.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds