Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47360 * 2 1 4 4 C 1.46894 * 110.99916 * 160.59021 * 3 2 1 5 5 C 1.53001 * 109.47154 * 288.34588 * 4 3 2 6 6 C 1.46898 * 110.99757 * 284.54487 * 3 2 1 7 7 H 1.09007 * 109.47078 * 54.99932 * 6 3 2 8 8 C 1.52994 * 109.47172 * 294.99945 * 6 3 2 9 9 C 1.53003 * 109.47185 * 180.02562 * 8 6 3 10 10 C 1.53003 * 109.46882 * 60.00210 * 9 8 6 11 11 C 1.53000 * 109.46680 * 299.99534 * 10 9 8 12 12 H 1.09003 * 109.46852 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47521 * 300.00466 * 11 10 9 14 14 H 1.07997 * 120.00320 * 119.99844 * 13 11 10 15 15 C 1.37885 * 119.99961 * 300.27431 * 13 11 10 16 16 N 1.31519 * 119.99498 * 359.72936 * 15 13 11 17 17 Si 1.86797 * 120.00215 * 179.72446 * 15 13 11 18 18 H 1.48500 * 109.46987 * 59.99830 * 17 15 13 19 19 H 1.48494 * 109.47157 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46862 * 300.00374 * 17 15 13 21 21 C 1.52996 * 109.46989 * 174.99704 * 6 3 2 22 22 H 1.08991 * 109.47180 * 306.15651 * 1 2 3 23 23 H 1.09000 * 109.46549 * 66.15658 * 1 2 3 24 24 H 1.09001 * 109.46902 * 186.15186 * 1 2 3 25 25 H 1.09000 * 109.47396 * 239.99290 * 2 1 3 26 26 H 1.09005 * 109.46940 * 119.99499 * 2 1 3 27 27 H 1.08998 * 109.47685 * 48.35302 * 4 3 2 28 28 H 1.09007 * 109.46930 * 168.35014 * 4 3 2 29 29 H 1.09002 * 109.46698 * 180.49785 * 5 4 3 30 30 H 1.08995 * 109.47556 * 300.50420 * 5 4 3 31 31 H 1.09005 * 109.46531 * 60.50745 * 5 4 3 32 32 H 1.08999 * 109.47673 * 60.00049 * 8 6 3 33 33 H 1.09007 * 109.47108 * 299.99968 * 8 6 3 34 34 H 1.08992 * 109.47153 * 299.99487 * 9 8 6 35 35 H 1.09004 * 109.47282 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46584 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47320 * 59.99852 * 10 9 8 38 38 H 0.97006 * 119.99398 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47048 * 60.00475 * 21 6 3 40 40 H 1.08997 * 109.47480 * 300.00026 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4147 1.4501 0.4557 5 6 3.4734 1.1736 1.9594 6 6 1.8705 1.9961 -1.3275 7 1 0.8318 1.9177 -1.6489 8 6 2.7703 1.2681 -2.3281 9 6 2.6153 1.9050 -3.7106 10 6 3.0184 3.3793 -3.6410 11 6 2.1185 4.1073 -2.6404 12 1 2.4054 5.1577 -2.5911 13 6 0.6827 3.9994 -3.0850 14 1 -0.0464 3.5242 -2.4456 15 6 0.3009 4.5025 -4.3107 16 7 1.1889 5.0812 -5.0894 17 14 -1.4773 4.3620 -4.8652 18 1 -2.3547 5.0692 -3.8981 19 1 -1.6265 4.9749 -6.2096 20 1 -1.8642 2.9297 -4.9289 21 6 2.2731 3.4705 -1.2583 22 1 -0.3633 0.6063 0.8297 23 1 -0.3632 0.4154 -0.9400 24 1 -0.3633 -1.0218 0.1101 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.0055 0.7031 -0.0744 28 1 3.8172 2.4426 0.2529 29 1 4.5075 1.2306 2.2992 30 1 2.8755 1.9153 2.4889 31 1 3.0791 0.1776 2.1613 32 1 2.4835 0.2177 -2.3774 33 1 3.8089 1.3465 -2.0067 34 1 1.5769 1.8270 -4.0322 35 1 3.2567 1.3867 -4.4234 36 1 2.9084 3.8329 -4.6260 37 1 4.0569 3.4573 -3.3193 38 1 0.9202 5.4355 -5.9516 39 1 3.3116 3.5489 -0.9370 40 1 1.6320 3.9892 -0.5455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = -18.622161 kcal Electronic energy + Delta-G solvation = -16991.595791 eV Core-core repulsion = 14612.363640 eV Total energy + Delta-G solvation = -2379.232151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.06017 -35.80638 -32.29219 -31.60100 -29.94557 -29.51553 -26.63382 -24.87634 -22.74826 -22.24296 -21.16962 -19.43348 -18.22205 -15.83398 -15.53851 -15.09199 -14.41194 -14.26048 -13.88721 -13.61647 -13.08891 -12.70895 -12.30158 -12.14270 -11.76015 -11.59477 -11.40151 -11.23224 -11.15219 -11.05108 -10.95491 -10.79097 -10.55015 -10.19743 -10.00550 -9.82097 -9.49929 -9.12750 -8.99528 -8.55248 -8.19780 -7.67712 -5.91618 -3.95796 3.34542 3.39547 3.42390 4.37584 4.48687 5.22758 5.35477 5.38862 5.45954 5.61699 5.64064 5.76679 5.77412 5.85913 5.92678 6.04752 6.10298 6.20078 6.29957 6.38755 6.41160 6.48062 6.57335 6.58806 6.66007 6.79886 6.86042 6.91413 7.07258 7.23858 7.49415 7.57349 7.65897 7.76236 7.82407 8.00506 8.22441 8.54421 9.06645 9.67141 11.14192 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031464 B = 0.008813 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.702619 B = 3176.343566 C = 3550.819317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.043 3.957 5 C -0.145 4.145 6 C 0.093 3.907 7 H 0.092 0.908 8 C -0.141 4.141 9 C -0.098 4.098 10 C -0.109 4.109 11 C 0.045 3.955 12 H 0.025 0.975 13 C -0.500 4.500 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.094 4.094 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.011 0.989 38 H 0.258 0.742 39 H 0.034 0.966 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -8.430 8.200 12.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.085 4.085 5 C -0.203 4.203 6 C -0.014 4.014 7 H 0.110 0.890 8 C -0.180 4.180 9 C -0.136 4.136 10 C -0.146 4.146 11 C 0.027 3.973 12 H 0.043 0.957 13 C -0.538 4.538 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.712 3.288 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.132 4.132 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.630 -8.074 8.371 11.924 hybrid contribution -0.456 -0.605 -1.014 1.265 sum 2.175 -8.678 7.357 11.583 Atomic orbital electron populations 1.21743 0.95304 1.00537 1.02736 1.22111 0.96049 0.90128 1.00088 1.62410 1.19039 1.16772 1.27692 1.22114 0.89867 1.01540 0.94952 1.21793 1.00670 1.01482 0.96309 1.21758 1.00499 0.94551 0.84565 0.88982 1.22121 0.99210 0.98344 0.98288 1.21304 1.01602 0.96992 0.93700 1.21523 0.95031 0.94045 1.04043 1.18669 0.95228 0.94551 0.88894 0.95680 1.21126 0.93810 1.37002 1.01891 0.92709 1.24937 0.96710 0.95422 0.96884 1.69867 1.33122 1.39341 1.10792 0.86795 0.86042 0.78237 0.77753 1.20366 1.21467 1.20430 1.21614 0.97951 0.93654 1.00003 0.92117 0.92413 0.93218 0.94617 0.91808 0.95424 0.90210 0.93051 0.92097 0.93275 0.93865 0.93512 0.91213 0.95211 0.89209 0.97028 0.93164 0.94779 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.92 37.16 0.37 -1.67 16 2 C 0.04 0.64 5.43 -3.82 -0.02 0.62 16 3 N -0.54 -8.82 4.38 -226.65 -0.99 -9.81 16 4 C 0.04 0.64 4.60 -3.83 -0.02 0.62 16 5 C -0.14 -1.78 9.97 37.16 0.37 -1.41 16 6 C 0.09 1.79 1.91 -67.72 -0.13 1.66 16 7 H 0.09 1.97 5.32 -51.93 -0.28 1.70 16 8 C -0.14 -2.62 4.58 -26.73 -0.12 -2.75 16 9 C -0.10 -2.08 5.70 -26.73 -0.15 -2.23 16 10 C -0.11 -2.56 5.23 -26.73 -0.14 -2.70 16 11 C 0.05 1.12 2.59 -91.80 -0.24 0.88 16 12 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.50 -13.28 6.61 -34.44 -0.23 -13.50 16 14 H 0.05 1.45 6.71 -52.49 -0.35 1.10 16 15 C 0.06 1.66 5.30 -17.81 -0.09 1.57 16 16 N -0.89 -25.27 11.31 55.43 0.63 -24.64 16 17 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.09 -1.98 4.53 -26.76 -0.12 -2.11 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.90 7.06 -51.93 -0.37 0.53 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.53 5.89 -51.93 -0.31 0.23 16 26 H 0.06 0.83 6.23 -51.93 -0.32 0.50 16 27 H 0.03 0.40 7.13 -51.93 -0.37 0.03 16 28 H 0.08 1.26 5.68 -51.93 -0.30 0.96 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.57 6.53 -51.93 -0.34 0.23 16 32 H 0.04 0.75 6.25 -51.93 -0.32 0.43 16 33 H 0.05 0.85 6.75 -51.93 -0.35 0.49 16 34 H 0.07 1.63 7.22 -51.93 -0.37 1.25 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.03 0.67 6.13 -51.93 -0.32 0.35 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -26.91 289.33 -8.38 -35.30 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.83 Total: -0.39 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -0.52 Total: -21.01 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.37 Total: -34.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.91 -8.38 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.674 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds