Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47360 * 2 1 4 4 C 1.46894 * 110.99916 * 160.59021 * 3 2 1 5 5 C 1.53001 * 109.47154 * 288.34588 * 4 3 2 6 6 C 1.46898 * 110.99757 * 284.54487 * 3 2 1 7 7 H 1.09007 * 109.47078 * 54.99932 * 6 3 2 8 8 C 1.52994 * 109.47172 * 294.99945 * 6 3 2 9 9 C 1.53003 * 109.47185 * 180.02562 * 8 6 3 10 10 C 1.53003 * 109.46882 * 60.00210 * 9 8 6 11 11 C 1.53000 * 109.46680 * 299.99534 * 10 9 8 12 12 H 1.09003 * 109.46852 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47521 * 300.00466 * 11 10 9 14 14 H 1.07997 * 120.00320 * 119.99844 * 13 11 10 15 15 C 1.37885 * 119.99961 * 300.27431 * 13 11 10 16 16 N 1.31519 * 119.99498 * 359.72936 * 15 13 11 17 17 Si 1.86797 * 120.00215 * 179.72446 * 15 13 11 18 18 H 1.48500 * 109.46987 * 59.99830 * 17 15 13 19 19 H 1.48494 * 109.47157 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46862 * 300.00374 * 17 15 13 21 21 C 1.52996 * 109.46989 * 174.99704 * 6 3 2 22 22 H 1.08991 * 109.47180 * 306.15651 * 1 2 3 23 23 H 1.09000 * 109.46549 * 66.15658 * 1 2 3 24 24 H 1.09001 * 109.46902 * 186.15186 * 1 2 3 25 25 H 1.09000 * 109.47396 * 239.99290 * 2 1 3 26 26 H 1.09005 * 109.46940 * 119.99499 * 2 1 3 27 27 H 1.08998 * 109.47685 * 48.35302 * 4 3 2 28 28 H 1.09007 * 109.46930 * 168.35014 * 4 3 2 29 29 H 1.09002 * 109.46698 * 180.49785 * 5 4 3 30 30 H 1.08995 * 109.47556 * 300.50420 * 5 4 3 31 31 H 1.09005 * 109.46531 * 60.50745 * 5 4 3 32 32 H 1.08999 * 109.47673 * 60.00049 * 8 6 3 33 33 H 1.09007 * 109.47108 * 299.99968 * 8 6 3 34 34 H 1.08992 * 109.47153 * 299.99487 * 9 8 6 35 35 H 1.09004 * 109.47282 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46584 * 179.97438 * 10 9 8 37 37 H 1.08993 * 109.47320 * 59.99852 * 10 9 8 38 38 H 0.97006 * 119.99398 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47048 * 60.00475 * 21 6 3 40 40 H 1.08997 * 109.47480 * 300.00026 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4147 1.4501 0.4557 5 6 3.4734 1.1736 1.9594 6 6 1.8705 1.9961 -1.3275 7 1 0.8318 1.9177 -1.6489 8 6 2.7703 1.2681 -2.3281 9 6 2.6153 1.9050 -3.7106 10 6 3.0184 3.3793 -3.6410 11 6 2.1185 4.1073 -2.6404 12 1 2.4054 5.1577 -2.5911 13 6 0.6827 3.9994 -3.0850 14 1 -0.0464 3.5242 -2.4456 15 6 0.3009 4.5025 -4.3107 16 7 1.1889 5.0812 -5.0894 17 14 -1.4773 4.3620 -4.8652 18 1 -2.3547 5.0692 -3.8981 19 1 -1.6265 4.9749 -6.2096 20 1 -1.8642 2.9297 -4.9289 21 6 2.2731 3.4705 -1.2583 22 1 -0.3633 0.6063 0.8297 23 1 -0.3632 0.4154 -0.9400 24 1 -0.3633 -1.0218 0.1101 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.0055 0.7031 -0.0744 28 1 3.8172 2.4426 0.2529 29 1 4.5075 1.2306 2.2992 30 1 2.8755 1.9153 2.4889 31 1 3.0791 0.1776 2.1613 32 1 2.4835 0.2177 -2.3774 33 1 3.8089 1.3465 -2.0067 34 1 1.5769 1.8270 -4.0322 35 1 3.2567 1.3867 -4.4234 36 1 2.9084 3.8329 -4.6260 37 1 4.0569 3.4573 -3.3193 38 1 0.9202 5.4355 -5.9516 39 1 3.3116 3.5489 -0.9370 40 1 1.6320 3.9892 -0.5455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = -33.300554 kcal Electronic energy + Delta-G solvation = -16992.232294 eV Core-core repulsion = 14612.363640 eV Total energy + Delta-G solvation = -2379.868654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56531 -37.40186 -34.24608 -32.71312 -31.58412 -31.14857 -28.02859 -26.91624 -23.95644 -23.61927 -22.87699 -21.09528 -19.85919 -17.68501 -17.11039 -16.66973 -16.09740 -15.44320 -15.33446 -15.08512 -14.74232 -14.55205 -13.74039 -13.48226 -13.31075 -12.97075 -12.88696 -12.76250 -12.70011 -12.54280 -12.45523 -12.33586 -12.21857 -11.84123 -11.55310 -11.36744 -11.19842 -10.94910 -10.84267 -10.49044 -10.22771 -8.99102 -8.01837 -6.11815 1.41937 1.42390 1.49440 2.46448 3.10243 3.26719 3.98004 4.08924 4.15179 4.31679 4.38909 4.44240 4.53656 4.65892 4.70405 4.78277 4.82457 4.85566 4.89817 4.97064 5.00626 5.07034 5.08794 5.16608 5.20679 5.21542 5.38294 5.43164 5.45483 5.54875 5.67695 5.69928 5.74292 5.97584 6.23582 6.36848 6.42532 6.47387 6.97500 7.53809 9.02787 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031464 B = 0.008813 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.702619 B = 3176.343566 C = 3550.819317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.543 5.543 4 C 0.040 3.960 5 C -0.137 4.137 6 C 0.105 3.895 7 H 0.066 0.934 8 C -0.131 4.131 9 C -0.092 4.092 10 C -0.103 4.103 11 C 0.041 3.959 12 H -0.011 1.011 13 C -0.505 4.505 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.940 3.060 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.085 4.085 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.257 0.743 39 H 0.048 0.952 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -10.387 9.461 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.266 5.266 4 C -0.087 4.087 5 C -0.195 4.195 6 C -0.003 4.003 7 H 0.085 0.915 8 C -0.170 4.170 9 C -0.131 4.131 10 C -0.141 4.141 11 C 0.022 3.978 12 H 0.007 0.993 13 C -0.543 4.543 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.560 5.560 17 Si 0.766 3.234 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.123 4.123 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.814 -10.040 9.649 14.206 hybrid contribution -0.483 0.026 -1.371 1.454 sum 2.331 -10.014 8.277 13.199 Atomic orbital electron populations 1.21728 0.95177 1.01852 1.01299 1.22207 0.96179 0.88880 1.01128 1.62367 1.20481 1.18196 1.25586 1.22194 0.88674 1.01061 0.96793 1.21734 1.01896 1.01767 0.94105 1.21425 0.99023 0.93463 0.86434 0.91538 1.22021 0.99804 0.98950 0.96186 1.21198 1.00209 0.95679 0.95966 1.21381 0.95512 0.95407 1.01842 1.18647 0.94604 0.93055 0.91456 0.99316 1.21346 0.94738 1.36417 1.01802 0.93123 1.25612 1.00217 0.95374 0.97131 1.70010 1.34710 1.40240 1.10992 0.85892 0.81822 0.78411 0.77249 1.20008 1.21303 1.19733 1.21441 0.98658 0.94896 0.97264 0.92522 0.94669 0.90728 0.94661 0.89497 0.94717 0.91504 0.91179 0.92844 0.92212 0.92033 0.92270 0.93787 0.93540 0.92448 0.95746 0.93366 0.93332 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.92 71.98 0.71 -2.99 16 2 C 0.04 1.14 5.43 86.30 0.47 1.60 16 3 N -0.54 -16.75 4.38 -870.99 -3.82 -20.57 16 4 C 0.04 1.08 4.60 86.30 0.40 1.48 16 5 C -0.14 -2.92 9.97 71.98 0.72 -2.20 16 6 C 0.10 3.91 1.91 44.91 0.09 3.99 16 7 H 0.07 2.85 5.32 -2.38 -0.01 2.84 16 8 C -0.13 -4.62 4.58 30.59 0.14 -4.48 16 9 C -0.09 -3.87 5.70 30.60 0.17 -3.69 16 10 C -0.10 -4.93 5.23 30.60 0.16 -4.77 16 11 C 0.04 2.08 2.59 -11.56 -0.03 2.05 16 12 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 13 C -0.50 -27.42 6.61 25.60 0.17 -27.25 16 14 H 0.05 2.74 6.71 -2.91 -0.02 2.72 16 15 C 0.01 0.80 5.30 84.66 0.45 1.25 16 16 N -0.92 -53.47 11.31 21.45 0.24 -53.23 16 17 Si 0.94 44.04 29.54 68.60 2.03 46.06 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 C -0.08 -3.56 4.53 30.58 0.14 -3.43 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.03 1.06 7.06 -2.39 -0.02 1.04 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 0.94 5.89 -2.39 -0.01 0.92 16 26 H 0.09 1.90 6.23 -2.38 -0.01 1.88 16 27 H 0.03 0.89 7.13 -2.39 -0.02 0.87 16 28 H 0.07 1.96 5.68 -2.38 -0.01 1.94 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.14 6.53 -2.38 -0.02 1.13 16 32 H 0.06 1.98 6.25 -2.39 -0.01 1.96 16 33 H 0.06 1.97 6.75 -2.38 -0.02 1.95 16 34 H 0.04 2.06 7.22 -2.39 -0.02 2.04 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 3.12 6.06 -2.39 -0.01 3.10 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 39 H 0.05 1.88 6.13 -2.39 -0.01 1.87 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -58.23 289.33 3.03 -55.20 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.99 Total: 10.96 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.58 Total: -38.43 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -3.58 Total: -73.79 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -58.23 3.03 -55.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.899 kcal (2) G-P(sol) polarization free energy of solvation -58.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds