Wall clock time and date at job start Mon Mar 30 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47186 * 2 1 4 4 C 1.46894 * 111.00308 * 62.18175 * 3 2 1 5 5 C 1.52998 * 109.46795 * 60.17611 * 4 3 2 6 6 C 1.46903 * 111.00093 * 186.14221 * 3 2 1 7 7 H 1.08994 * 109.47371 * 72.01058 * 6 3 2 8 8 C 1.50706 * 109.46555 * 312.01350 * 6 3 2 9 9 H 1.07992 * 120.00014 * 271.34363 * 8 6 3 10 10 C 1.37877 * 119.99777 * 91.35012 * 8 6 3 11 11 N 1.31515 * 120.00224 * 7.51191 * 10 8 6 12 12 Si 1.86801 * 119.99723 * 187.51928 * 10 8 6 13 13 H 1.48497 * 109.47292 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47042 * 119.99821 * 12 10 8 15 15 H 1.48509 * 109.46866 * 239.99412 * 12 10 8 16 16 C 1.52999 * 109.47395 * 192.01796 * 6 3 2 17 17 C 1.54268 * 110.02816 * 300.85940 * 16 6 3 18 18 C 1.54889 * 104.19308 * 217.10214 * 17 16 6 19 19 C 1.54891 * 102.75088 * 37.94266 * 18 17 16 20 20 C 1.53872 * 110.03526 * 183.69273 * 16 6 3 21 21 H 1.08998 * 109.47124 * 303.45064 * 1 2 3 22 22 H 1.08997 * 109.47037 * 63.45368 * 1 2 3 23 23 H 1.09005 * 109.47285 * 183.45581 * 1 2 3 24 24 H 1.09010 * 109.46757 * 239.99931 * 2 1 3 25 25 H 1.09003 * 109.47283 * 120.00151 * 2 1 3 26 26 H 1.09001 * 109.47119 * 180.16929 * 4 3 2 27 27 H 1.08993 * 109.47393 * 300.17646 * 4 3 2 28 28 H 1.08999 * 109.47224 * 314.89228 * 5 4 3 29 29 H 1.08997 * 109.47923 * 74.89426 * 5 4 3 30 30 H 1.09002 * 109.47327 * 194.89805 * 5 4 3 31 31 H 0.96999 * 119.99683 * 356.66085 * 11 10 8 32 32 H 1.09004 * 110.01402 * 62.29520 * 16 6 3 33 33 H 1.08995 * 110.48706 * 335.77771 * 17 16 6 34 34 H 1.08998 * 110.48983 * 98.42660 * 17 16 6 35 35 H 1.09002 * 110.76004 * 279.62749 * 18 17 16 36 36 H 1.09004 * 110.91695 * 156.33040 * 18 17 16 37 37 H 1.08994 * 110.48879 * 203.37759 * 19 18 17 38 38 H 1.09005 * 110.59672 * 80.78616 * 19 18 17 39 39 H 1.09000 * 110.02899 * 238.57085 * 20 16 6 40 40 H 1.08999 * 110.02970 * 359.97438 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5918 2.0946 1.2129 5 6 2.1504 1.3806 2.4453 6 6 3.4808 1.4267 -0.1467 7 1 3.7514 1.1549 -1.1670 8 6 4.1103 0.4534 0.8163 9 1 4.3619 0.7706 1.8174 10 6 4.3651 -0.8421 0.4190 11 7 4.1977 -1.1894 -0.8383 12 14 4.9479 -2.1041 1.6669 13 1 5.0564 -1.4655 3.0032 14 1 3.9744 -3.2236 1.7304 15 1 6.2770 -2.6264 1.2590 16 6 3.9835 2.8399 0.1550 17 6 3.3300 3.8505 -0.8101 18 6 4.4546 4.8731 -1.1079 19 6 5.7172 3.9794 -1.1864 20 6 5.5012 2.9219 -0.0842 21 1 -0.3633 0.5665 0.8574 22 1 -0.3633 0.4593 -0.9193 23 1 -0.3634 -1.0258 0.0619 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 1.9653 3.1183 1.1857 27 1 0.5031 2.1062 1.2621 28 1 2.0027 0.3057 2.3406 29 1 3.2154 1.5937 2.5373 30 1 1.6311 1.7335 3.3363 31 1 3.8489 -0.5475 -1.4764 32 1 3.7532 3.1054 1.1869 33 1 3.0142 3.3529 -1.7271 34 1 2.4836 4.3430 -0.3313 35 1 4.5433 5.5967 -0.2976 36 1 4.2795 5.3785 -2.0577 37 1 6.6130 4.5658 -0.9822 38 1 5.7892 3.5023 -2.1639 39 1 6.0075 3.2279 0.8312 40 1 5.8798 1.9547 -0.4149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:03 Heat of formation + Delta-G solvation = -7.450951 kcal Electronic energy + Delta-G solvation = -17409.344862 eV Core-core repulsion = 15030.597130 eV Total energy + Delta-G solvation = -2378.747731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.79582 -36.24570 -32.66239 -30.82012 -29.31903 -28.05330 -27.14981 -25.25524 -22.56913 -22.03156 -20.03479 -19.07011 -18.45374 -16.64953 -15.73857 -14.92670 -14.37362 -14.13440 -13.76072 -13.18747 -12.91776 -12.65518 -12.16049 -11.84573 -11.68339 -11.46863 -11.07062 -10.98126 -10.69788 -10.50991 -10.43162 -10.28805 -10.19079 -10.12397 -10.01396 -9.90664 -9.81809 -9.38169 -8.90128 -8.83625 -8.26435 -6.86583 -6.28495 -4.03694 3.41247 3.42083 3.55808 4.49168 5.12514 5.35569 5.36862 5.40457 5.57691 5.92065 6.00992 6.10517 6.15616 6.17199 6.24286 6.28353 6.29831 6.34162 6.34323 6.48737 6.49546 6.54126 6.60299 6.75265 6.81689 6.86756 6.89533 6.97574 7.08894 7.12121 7.22171 7.30352 7.51854 7.59536 8.15406 8.33965 8.56037 8.63823 8.88260 9.64824 11.01921 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.012850 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.147441 B = 2178.413246 C = 2857.793490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 N -0.537 5.537 4 C 0.053 3.947 5 C -0.178 4.178 6 C 0.192 3.808 7 H 0.048 0.952 8 C -0.609 4.609 9 H 0.055 0.945 10 C 0.030 3.970 11 N -0.909 5.909 12 Si 1.057 2.943 13 H -0.290 1.290 14 H -0.288 1.288 15 H -0.288 1.288 16 C -0.075 4.075 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.106 4.106 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.019 0.981 31 H 0.273 0.727 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 6.847 1.728 7.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 N -0.261 5.261 4 C -0.076 4.076 5 C -0.236 4.236 6 C 0.087 3.913 7 H 0.066 0.934 8 C -0.649 4.649 9 H 0.073 0.927 10 C -0.176 4.176 11 N -0.546 5.546 12 Si 0.887 3.113 13 H -0.216 1.216 14 H -0.214 1.214 15 H -0.215 1.215 16 C -0.094 4.094 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.144 4.144 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.855 5.516 1.463 6.001 hybrid contribution -0.107 1.070 0.682 1.273 sum -1.962 6.586 2.145 7.199 Atomic orbital electron populations 1.21899 0.98169 0.99781 1.00797 1.21899 0.91767 0.90897 1.02376 1.63013 1.14885 1.14010 1.34170 1.22003 0.97827 0.97862 0.89912 1.22645 1.02322 1.01981 0.96688 1.19584 0.83481 0.90953 0.97289 0.93444 1.22584 1.44562 0.97439 1.00274 0.92680 1.25604 0.94902 0.98182 0.98892 1.70771 1.41993 1.39615 1.02259 0.83710 0.76805 0.75868 0.74945 1.21622 1.21441 1.21499 1.21805 0.93701 0.96138 0.97711 1.22384 0.96329 0.95909 1.00122 1.22527 0.96369 0.97625 0.99954 1.22379 0.96847 0.97335 0.99662 1.22019 0.96732 0.98884 0.96795 0.93606 0.93432 0.93864 0.91104 0.93215 0.92074 0.93475 0.92009 0.90889 0.96232 0.91443 0.92486 0.91678 0.92958 0.92580 0.92841 0.93060 0.92296 0.93531 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.83 37.16 0.37 -2.38 16 2 C 0.06 1.31 4.16 -3.83 -0.02 1.29 16 3 N -0.54 -11.60 4.53 -228.04 -1.03 -12.64 16 4 C 0.05 1.03 5.12 -3.83 -0.02 1.01 16 5 C -0.18 -3.56 8.25 37.16 0.31 -3.26 16 6 C 0.19 4.43 1.28 -68.86 -0.09 4.34 16 7 H 0.05 1.25 6.23 -51.93 -0.32 0.92 16 8 C -0.61 -15.24 4.27 -34.44 -0.15 -15.39 16 9 H 0.06 1.43 5.62 -52.49 -0.30 1.13 16 10 C 0.03 0.79 4.11 -17.82 -0.07 0.72 16 11 N -0.91 -25.52 12.66 55.43 0.70 -24.81 16 12 Si 1.06 24.48 29.91 -169.99 -5.08 19.40 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 C -0.07 -1.49 1.77 -89.50 -0.16 -1.65 16 17 C -0.11 -1.96 5.60 -25.07 -0.14 -2.10 16 18 C -0.13 -1.97 6.91 -24.74 -0.17 -2.14 16 19 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 20 C -0.11 -2.05 6.06 -25.62 -0.16 -2.21 16 21 H 0.04 0.80 6.28 -51.93 -0.33 0.47 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.76 6.31 -51.92 -0.33 1.43 16 25 H 0.05 1.21 4.51 -51.93 -0.23 0.97 16 26 H 0.06 1.16 4.82 -51.93 -0.25 0.91 16 27 H 0.05 0.87 6.27 -51.93 -0.33 0.54 16 28 H 0.06 1.34 5.48 -51.93 -0.28 1.06 16 29 H 0.07 1.58 4.51 -51.93 -0.23 1.34 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.27 7.73 5.56 -40.82 -0.23 7.50 16 32 H 0.06 1.17 5.53 -51.93 -0.29 0.89 16 33 H 0.06 1.25 7.85 -51.93 -0.41 0.84 16 34 H 0.05 0.89 7.18 -51.93 -0.37 0.52 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.66 7.25 -51.93 -0.38 1.28 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -25.83 281.18 -8.10 -33.93 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.45 Total: 3.87 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -0.47 Total: -23.99 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.33 Total: -37.45 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.83 -8.10 -33.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.481 kcal (2) G-P(sol) polarization free energy of solvation -25.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds