Wall clock time and date at job start Mon Mar 30 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47186 * 2 1 4 4 C 1.46894 * 111.00308 * 62.18175 * 3 2 1 5 5 C 1.52998 * 109.46795 * 60.17611 * 4 3 2 6 6 C 1.46903 * 111.00093 * 186.14221 * 3 2 1 7 7 H 1.08994 * 109.47371 * 72.01058 * 6 3 2 8 8 C 1.50706 * 109.46555 * 312.01350 * 6 3 2 9 9 H 1.07992 * 120.00014 * 271.34363 * 8 6 3 10 10 C 1.37877 * 119.99777 * 91.35012 * 8 6 3 11 11 N 1.31515 * 120.00224 * 7.51191 * 10 8 6 12 12 Si 1.86801 * 119.99723 * 187.51928 * 10 8 6 13 13 H 1.48497 * 109.47292 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47042 * 119.99821 * 12 10 8 15 15 H 1.48509 * 109.46866 * 239.99412 * 12 10 8 16 16 C 1.52999 * 109.47395 * 192.01796 * 6 3 2 17 17 C 1.54268 * 110.02816 * 300.85940 * 16 6 3 18 18 C 1.54889 * 104.19308 * 217.10214 * 17 16 6 19 19 C 1.54891 * 102.75088 * 37.94266 * 18 17 16 20 20 C 1.53872 * 110.03526 * 183.69273 * 16 6 3 21 21 H 1.08998 * 109.47124 * 303.45064 * 1 2 3 22 22 H 1.08997 * 109.47037 * 63.45368 * 1 2 3 23 23 H 1.09005 * 109.47285 * 183.45581 * 1 2 3 24 24 H 1.09010 * 109.46757 * 239.99931 * 2 1 3 25 25 H 1.09003 * 109.47283 * 120.00151 * 2 1 3 26 26 H 1.09001 * 109.47119 * 180.16929 * 4 3 2 27 27 H 1.08993 * 109.47393 * 300.17646 * 4 3 2 28 28 H 1.08999 * 109.47224 * 314.89228 * 5 4 3 29 29 H 1.08997 * 109.47923 * 74.89426 * 5 4 3 30 30 H 1.09002 * 109.47327 * 194.89805 * 5 4 3 31 31 H 0.96999 * 119.99683 * 356.66085 * 11 10 8 32 32 H 1.09004 * 110.01402 * 62.29520 * 16 6 3 33 33 H 1.08995 * 110.48706 * 335.77771 * 17 16 6 34 34 H 1.08998 * 110.48983 * 98.42660 * 17 16 6 35 35 H 1.09002 * 110.76004 * 279.62749 * 18 17 16 36 36 H 1.09004 * 110.91695 * 156.33040 * 18 17 16 37 37 H 1.08994 * 110.48879 * 203.37759 * 19 18 17 38 38 H 1.09005 * 110.59672 * 80.78616 * 19 18 17 39 39 H 1.09000 * 110.02899 * 238.57085 * 20 16 6 40 40 H 1.08999 * 110.02970 * 359.97438 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5918 2.0946 1.2129 5 6 2.1504 1.3806 2.4453 6 6 3.4808 1.4267 -0.1467 7 1 3.7514 1.1549 -1.1670 8 6 4.1103 0.4534 0.8163 9 1 4.3619 0.7706 1.8174 10 6 4.3651 -0.8421 0.4190 11 7 4.1977 -1.1894 -0.8383 12 14 4.9479 -2.1041 1.6669 13 1 5.0564 -1.4655 3.0032 14 1 3.9744 -3.2236 1.7304 15 1 6.2770 -2.6264 1.2590 16 6 3.9835 2.8399 0.1550 17 6 3.3300 3.8505 -0.8101 18 6 4.4546 4.8731 -1.1079 19 6 5.7172 3.9794 -1.1864 20 6 5.5012 2.9219 -0.0842 21 1 -0.3633 0.5665 0.8574 22 1 -0.3633 0.4593 -0.9193 23 1 -0.3634 -1.0258 0.0619 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8900 26 1 1.9653 3.1183 1.1857 27 1 0.5031 2.1062 1.2621 28 1 2.0027 0.3057 2.3406 29 1 3.2154 1.5937 2.5373 30 1 1.6311 1.7335 3.3363 31 1 3.8489 -0.5475 -1.4764 32 1 3.7532 3.1054 1.1869 33 1 3.0142 3.3529 -1.7271 34 1 2.4836 4.3430 -0.3313 35 1 4.5433 5.5967 -0.2976 36 1 4.2795 5.3785 -2.0577 37 1 6.6130 4.5658 -0.9822 38 1 5.7892 3.5023 -2.1639 39 1 6.0075 3.2279 0.8312 40 1 5.8798 1.9547 -0.4149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:03 Heat of formation + Delta-G solvation = -21.640595 kcal Electronic energy + Delta-G solvation = -17409.960171 eV Core-core repulsion = 15030.597130 eV Total energy + Delta-G solvation = -2379.363040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48390 -37.79378 -34.62667 -32.45971 -30.99220 -29.54284 -28.71325 -27.14250 -24.27900 -23.81337 -21.40101 -20.71178 -20.18386 -18.58064 -17.32861 -16.60944 -16.03229 -15.68537 -15.58506 -14.93893 -14.54765 -14.11599 -13.79187 -13.50090 -13.43964 -13.05585 -12.74860 -12.71926 -12.45815 -12.04092 -11.99019 -11.94229 -11.82594 -11.71976 -11.48722 -11.46533 -11.39188 -11.04154 -10.75490 -10.67174 -10.27719 -8.73781 -8.34150 -6.12003 1.49072 1.54411 1.69357 2.56330 3.24617 3.64797 3.96025 3.96796 4.03624 4.30252 4.42663 4.57897 4.67543 4.68377 4.70264 4.78125 4.82547 4.86115 4.92160 4.93939 5.01011 5.04779 5.15218 5.18298 5.21143 5.28176 5.33364 5.41061 5.41506 5.53005 5.54188 5.61290 5.79775 5.83538 6.20080 6.31799 6.68220 6.81363 6.84429 7.61749 8.90897 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.012850 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.147441 B = 2178.413246 C = 2857.793490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.064 3.936 3 N -0.537 5.537 4 C 0.054 3.946 5 C -0.170 4.170 6 C 0.198 3.802 7 H 0.007 0.993 8 C -0.594 4.594 9 H 0.048 0.952 10 C -0.014 4.014 11 N -0.937 5.937 12 Si 1.091 2.909 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.288 1.288 16 C -0.073 4.073 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.107 4.107 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 8.799 2.810 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 N -0.260 5.260 4 C -0.074 4.074 5 C -0.228 4.228 6 C 0.092 3.908 7 H 0.025 0.975 8 C -0.633 4.633 9 H 0.066 0.934 10 C -0.214 4.214 11 N -0.576 5.576 12 Si 0.917 3.083 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.214 1.214 16 C -0.092 4.092 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.145 4.145 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.638 7.484 2.558 8.338 hybrid contribution 0.121 0.487 0.370 0.623 sum -2.517 7.971 2.928 8.857 Atomic orbital electron populations 1.21787 0.94878 1.01035 1.01815 1.21770 0.94411 0.90675 0.99568 1.62913 1.13678 1.13766 1.35676 1.22097 0.99031 0.97859 0.88458 1.22498 1.01404 1.00705 0.98233 1.19420 0.84454 0.92487 0.94468 0.97474 1.22725 1.43054 0.97577 0.99991 0.93374 1.26561 0.95249 1.00258 0.99340 1.70863 1.44357 1.39430 1.02982 0.83250 0.76404 0.74544 0.74082 1.20115 1.21282 1.21423 1.21748 0.94346 0.94848 0.98237 1.22291 0.97537 0.95831 0.98571 1.22488 0.94105 0.96996 1.01786 1.22347 0.98735 0.96768 0.97917 1.21978 0.96211 0.98066 0.98252 0.92058 0.92693 0.92677 0.94542 0.95558 0.90965 0.91414 0.94094 0.92897 0.93312 0.92882 0.92543 0.93610 0.91689 0.90663 0.90796 0.90615 0.93161 0.92741 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.83 71.98 0.71 -4.17 16 2 C 0.06 2.89 4.16 86.31 0.36 3.25 16 3 N -0.54 -23.15 4.53 -875.39 -3.97 -27.12 16 4 C 0.05 1.99 5.12 86.30 0.44 2.43 16 5 C -0.17 -6.53 8.25 71.98 0.59 -5.94 16 6 C 0.20 9.33 1.28 44.17 0.06 9.39 16 7 H 0.01 0.40 6.23 -2.39 -0.01 0.39 16 8 C -0.59 -30.47 4.27 25.60 0.11 -30.36 16 9 H 0.05 2.52 5.62 -2.91 -0.02 2.51 16 10 C -0.01 -0.75 4.11 84.65 0.35 -0.40 16 11 N -0.94 -55.02 12.66 21.45 0.27 -54.75 16 12 Si 1.09 50.27 29.91 68.60 2.05 52.33 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 16 C -0.07 -2.88 1.77 -10.07 -0.02 -2.90 16 17 C -0.10 -3.54 5.60 31.67 0.18 -3.37 16 18 C -0.12 -3.23 6.91 31.89 0.22 -3.01 16 19 C -0.12 -3.73 6.83 31.67 0.22 -3.52 16 20 C -0.11 -4.11 6.06 31.32 0.19 -3.92 16 21 H 0.06 1.97 6.28 -2.39 -0.01 1.96 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.04 1.88 6.31 -2.38 -0.02 1.86 16 25 H 0.03 1.30 4.51 -2.39 -0.01 1.29 16 26 H 0.07 2.54 4.82 -2.39 -0.01 2.52 16 27 H 0.07 2.26 6.27 -2.39 -0.01 2.25 16 28 H 0.04 1.74 5.48 -2.39 -0.01 1.73 16 29 H 0.05 2.23 4.51 -2.39 -0.01 2.22 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.26 15.63 5.56 -92.71 -0.52 15.11 16 32 H 0.06 2.24 5.53 -2.39 -0.01 2.23 16 33 H 0.05 1.72 7.85 -2.39 -0.02 1.70 16 34 H 0.06 2.03 7.18 -2.39 -0.02 2.01 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 1.63 7.25 -2.39 -0.02 1.61 16 Total: -1.00 -57.40 281.18 3.02 -54.38 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.26 Total: 17.68 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 3.40 Total: -42.51 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.70 Total: -81.87 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.33 kcal Total: -57.40 3.02 -54.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.739 kcal (2) G-P(sol) polarization free energy of solvation -57.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds