Wall clock time and date at job start Mon Mar 30 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47504 * 2 1 4 4 C 1.46902 * 111.00257 * 163.61152 * 3 2 1 5 5 C 1.52995 * 109.46856 * 194.14570 * 4 3 2 6 6 C 1.46903 * 110.99429 * 287.56322 * 3 2 1 7 7 H 1.08997 * 109.47605 * 47.41083 * 6 3 2 8 8 C 1.50702 * 109.47115 * 167.40642 * 6 3 2 9 9 H 1.08001 * 120.00229 * 122.61774 * 8 6 3 10 10 C 1.37882 * 119.99943 * 302.62567 * 8 6 3 11 11 N 1.31516 * 120.00000 * 4.46972 * 10 8 6 12 12 Si 1.86800 * 119.99886 * 184.47384 * 10 8 6 13 13 H 1.48500 * 109.47405 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47192 * 119.99799 * 12 10 8 15 15 H 1.48503 * 109.46796 * 239.99557 * 12 10 8 16 16 C 1.52994 * 109.47342 * 287.40760 * 6 3 2 17 17 C 1.54269 * 110.03293 * 282.14190 * 16 6 3 18 18 C 1.54962 * 104.16313 * 217.13509 * 17 16 6 19 19 C 1.54895 * 102.77347 * 37.88813 * 18 17 16 20 20 C 1.53871 * 110.03426 * 164.92829 * 16 6 3 21 21 H 1.08999 * 109.47533 * 295.55155 * 1 2 3 22 22 H 1.09002 * 109.46674 * 55.54800 * 1 2 3 23 23 H 1.09005 * 109.47092 * 175.54486 * 1 2 3 24 24 H 1.09005 * 109.47201 * 239.99600 * 2 1 3 25 25 H 1.09000 * 109.47098 * 119.99853 * 2 1 3 26 26 H 1.08993 * 109.46505 * 314.14640 * 4 3 2 27 27 H 1.09001 * 109.46743 * 74.14640 * 4 3 2 28 28 H 1.09003 * 109.47351 * 290.77891 * 5 4 3 29 29 H 1.09007 * 109.47299 * 50.77844 * 5 4 3 30 30 H 1.08997 * 109.47048 * 170.77034 * 5 4 3 31 31 H 0.97000 * 119.99802 * 180.02562 * 11 10 8 32 32 H 1.08995 * 110.01750 * 43.53121 * 16 6 3 33 33 H 1.09000 * 110.48582 * 335.78543 * 17 16 6 34 34 H 1.08997 * 110.48619 * 98.42484 * 17 16 6 35 35 H 1.08997 * 110.71949 * 279.57562 * 18 17 16 36 36 H 1.08997 * 110.92539 * 156.29344 * 18 17 16 37 37 H 1.09005 * 110.48054 * 203.40154 * 19 18 17 38 38 H 1.08993 * 110.59865 * 80.82185 * 19 18 17 39 39 H 1.09003 * 110.03260 * 238.57045 * 20 16 6 40 40 H 1.09003 * 110.03542 * 359.94885 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4357 1.4427 0.3869 5 6 3.8153 2.8873 0.7180 6 6 1.8050 2.0191 -1.3076 7 1 0.7845 1.8295 -1.6403 8 6 2.0261 3.5050 -1.1876 9 1 2.7630 3.9932 -1.8081 10 6 1.2876 4.2412 -0.2855 11 7 0.4537 3.6354 0.5314 12 14 1.4715 6.0992 -0.2237 13 1 2.4661 6.5322 -1.2379 14 1 0.1612 6.7361 -0.5113 15 1 1.9337 6.5061 1.1276 16 6 2.7893 1.4376 -2.3243 17 6 4.1855 2.0627 -2.1254 18 6 4.7410 2.2155 -3.5639 19 6 3.4866 2.6288 -4.3733 20 6 2.3452 1.7969 -3.7530 21 1 -0.3634 0.4432 0.9271 22 1 -0.3633 0.5814 -0.8474 23 1 -0.3633 -1.0246 -0.0798 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.5989 0.8143 1.2624 27 1 4.0524 1.0847 -0.4374 28 1 3.8096 3.4829 -0.1949 29 1 3.0953 3.2994 1.4251 30 1 4.8115 2.9091 1.1598 31 1 -0.0660 4.1534 1.1657 32 1 2.8456 0.3549 -2.2119 33 1 4.1022 3.0368 -1.6433 34 1 4.8207 1.3989 -1.5389 35 1 5.1394 1.2678 -3.9261 36 1 5.5022 2.9945 -3.6066 37 1 3.6127 2.3781 -5.4266 38 1 3.2890 3.6943 -4.2568 39 1 2.1867 0.8886 -4.3343 40 1 1.4279 2.3850 -3.7222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:05 Heat of formation + Delta-G solvation = 19.261589 kcal Electronic energy + Delta-G solvation = -17612.612850 eV Core-core repulsion = 15235.023461 eV Total energy + Delta-G solvation = -2377.589388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.96782 -35.50599 -32.40038 -31.13432 -29.49660 -27.74813 -26.89762 -25.80558 -22.37424 -21.21660 -20.02258 -19.71260 -18.24113 -16.58667 -15.18146 -14.89366 -14.37561 -13.95412 -13.63898 -12.86970 -12.61440 -12.54291 -11.98446 -11.92849 -11.58256 -11.19733 -10.95281 -10.74249 -10.59605 -10.46604 -10.40465 -10.23893 -10.16776 -9.97623 -9.90897 -9.83521 -9.48675 -9.39794 -9.07906 -8.53046 -8.12783 -6.47841 -5.72911 -3.79017 3.35839 3.45486 3.47575 4.54822 5.20479 5.39587 5.47299 5.51129 5.66819 6.01211 6.07348 6.21208 6.22173 6.29097 6.30318 6.38481 6.40847 6.45845 6.52203 6.58233 6.62543 6.68855 6.80957 6.85862 6.90026 6.95883 6.96642 7.10796 7.20503 7.24976 7.26929 7.52837 7.61344 7.93020 8.02630 8.37917 8.74390 8.90704 9.24634 9.77878 11.27870 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.015172 C = 0.011157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.350626 B = 1845.097905 C = 2509.021633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 N -0.489 5.489 4 C 0.047 3.953 5 C -0.143 4.143 6 C 0.223 3.777 7 H 0.037 0.963 8 C -0.516 4.516 9 H 0.062 0.938 10 C 0.085 3.915 11 N -0.837 5.837 12 Si 0.863 3.137 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.286 1.286 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.107 4.107 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.009 0.991 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.250 0.750 32 H 0.040 0.960 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -4.066 -4.054 7.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 N -0.212 5.212 4 C -0.080 4.080 5 C -0.200 4.200 6 C 0.118 3.882 7 H 0.055 0.945 8 C -0.554 4.554 9 H 0.080 0.920 10 C -0.121 4.121 11 N -0.472 5.472 12 Si 0.691 3.309 13 H -0.199 1.199 14 H -0.214 1.214 15 H -0.213 1.213 16 C -0.137 4.137 17 C -0.168 4.168 18 C -0.167 4.167 19 C -0.155 4.155 20 C -0.145 4.145 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.009 -3.792 -3.525 6.549 hybrid contribution 0.492 0.488 -0.380 0.790 sum 4.501 -3.305 -3.905 6.814 Atomic orbital electron populations 1.21609 0.95836 0.98223 1.03138 1.21985 0.95954 0.92345 0.97622 1.62577 1.15117 1.11574 1.31963 1.22321 0.90681 0.97393 0.97655 1.22189 0.96394 0.97516 1.03901 1.19465 0.92990 0.93587 0.82205 0.94506 1.20890 1.21755 0.91179 1.21619 0.92030 1.24880 0.95526 0.96255 0.95451 1.70155 1.24286 1.33518 1.19267 0.87027 0.77779 0.88306 0.77754 1.19949 1.21374 1.21281 1.22423 0.97369 0.97529 0.96388 1.23265 0.95246 1.03717 0.94525 1.22585 0.96986 0.99383 0.97758 1.22267 0.95501 1.00386 0.97351 1.22026 0.98771 0.98065 0.95610 0.92186 0.92551 0.95167 0.97295 0.93675 0.95189 0.94346 0.88742 0.92322 0.97273 0.93965 0.94151 0.87380 0.92700 0.93262 0.92922 0.93539 0.91664 0.94245 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 10.05 37.16 0.37 -2.21 16 2 C 0.05 1.01 5.59 -3.83 -0.02 0.99 16 3 N -0.49 -11.14 3.49 -228.04 -0.80 -11.94 16 4 C 0.05 1.00 5.13 -3.83 -0.02 0.98 16 5 C -0.14 -3.12 8.12 37.16 0.30 -2.81 16 6 C 0.22 5.16 1.38 -68.87 -0.10 5.07 16 7 H 0.04 0.95 6.12 -51.93 -0.32 0.64 16 8 C -0.52 -12.76 4.58 -34.44 -0.16 -12.92 16 9 H 0.06 1.53 5.92 -52.49 -0.31 1.22 16 10 C 0.09 2.21 4.16 -17.82 -0.07 2.14 16 11 N -0.84 -22.90 12.54 55.43 0.70 -22.21 16 12 Si 0.86 20.44 29.54 -169.99 -5.02 15.42 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.12 -2.33 2.20 -89.51 -0.20 -2.53 16 17 C -0.13 -2.46 4.04 -25.03 -0.10 -2.56 16 18 C -0.13 -2.12 6.91 -24.70 -0.17 -2.29 16 19 C -0.12 -1.96 6.83 -25.07 -0.17 -2.14 16 20 C -0.11 -1.96 6.21 -25.62 -0.16 -2.12 16 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.06 1.20 6.47 -51.93 -0.34 0.87 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.01 0.18 6.28 -51.93 -0.33 -0.15 16 25 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 26 H 0.03 0.61 7.76 -51.93 -0.40 0.21 16 27 H 0.04 0.78 3.43 -51.93 -0.18 0.60 16 28 H 0.09 2.14 3.31 -51.93 -0.17 1.97 16 29 H 0.06 1.43 7.52 -51.93 -0.39 1.04 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.04 0.81 6.32 -51.93 -0.33 0.48 16 33 H 0.11 2.25 3.14 -51.93 -0.16 2.09 16 34 H 0.05 1.00 5.91 -51.93 -0.31 0.69 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 LS Contribution 283.00 15.07 4.26 4.26 Total: -1.00 -25.91 283.00 -7.89 -33.80 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.54 Total: 1.06 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -0.49 Total: -20.41 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.10 Total: -34.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -25.91 -7.89 -33.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.065 kcal (2) G-P(sol) polarization free energy of solvation -25.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds