Wall clock time and date at job start Mon Mar 30 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47504 * 2 1 4 4 C 1.46902 * 111.00257 * 163.61152 * 3 2 1 5 5 C 1.52995 * 109.46856 * 194.14570 * 4 3 2 6 6 C 1.46903 * 110.99429 * 287.56322 * 3 2 1 7 7 H 1.08997 * 109.47605 * 47.41083 * 6 3 2 8 8 C 1.50702 * 109.47115 * 167.40642 * 6 3 2 9 9 H 1.08001 * 120.00229 * 122.61774 * 8 6 3 10 10 C 1.37882 * 119.99943 * 302.62567 * 8 6 3 11 11 N 1.31516 * 120.00000 * 4.46972 * 10 8 6 12 12 Si 1.86800 * 119.99886 * 184.47384 * 10 8 6 13 13 H 1.48500 * 109.47405 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47192 * 119.99799 * 12 10 8 15 15 H 1.48503 * 109.46796 * 239.99557 * 12 10 8 16 16 C 1.52994 * 109.47342 * 287.40760 * 6 3 2 17 17 C 1.54269 * 110.03293 * 282.14190 * 16 6 3 18 18 C 1.54962 * 104.16313 * 217.13509 * 17 16 6 19 19 C 1.54895 * 102.77347 * 37.88813 * 18 17 16 20 20 C 1.53871 * 110.03426 * 164.92829 * 16 6 3 21 21 H 1.08999 * 109.47533 * 295.55155 * 1 2 3 22 22 H 1.09002 * 109.46674 * 55.54800 * 1 2 3 23 23 H 1.09005 * 109.47092 * 175.54486 * 1 2 3 24 24 H 1.09005 * 109.47201 * 239.99600 * 2 1 3 25 25 H 1.09000 * 109.47098 * 119.99853 * 2 1 3 26 26 H 1.08993 * 109.46505 * 314.14640 * 4 3 2 27 27 H 1.09001 * 109.46743 * 74.14640 * 4 3 2 28 28 H 1.09003 * 109.47351 * 290.77891 * 5 4 3 29 29 H 1.09007 * 109.47299 * 50.77844 * 5 4 3 30 30 H 1.08997 * 109.47048 * 170.77034 * 5 4 3 31 31 H 0.97000 * 119.99802 * 180.02562 * 11 10 8 32 32 H 1.08995 * 110.01750 * 43.53121 * 16 6 3 33 33 H 1.09000 * 110.48582 * 335.78543 * 17 16 6 34 34 H 1.08997 * 110.48619 * 98.42484 * 17 16 6 35 35 H 1.08997 * 110.71949 * 279.57562 * 18 17 16 36 36 H 1.08997 * 110.92539 * 156.29344 * 18 17 16 37 37 H 1.09005 * 110.48054 * 203.40154 * 19 18 17 38 38 H 1.08993 * 110.59865 * 80.82185 * 19 18 17 39 39 H 1.09003 * 110.03260 * 238.57045 * 20 16 6 40 40 H 1.09003 * 110.03542 * 359.94885 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4357 1.4427 0.3869 5 6 3.8153 2.8873 0.7180 6 6 1.8050 2.0191 -1.3076 7 1 0.7845 1.8295 -1.6403 8 6 2.0261 3.5050 -1.1876 9 1 2.7630 3.9932 -1.8081 10 6 1.2876 4.2412 -0.2855 11 7 0.4537 3.6354 0.5314 12 14 1.4715 6.0992 -0.2237 13 1 2.4661 6.5322 -1.2379 14 1 0.1612 6.7361 -0.5113 15 1 1.9337 6.5061 1.1276 16 6 2.7893 1.4376 -2.3243 17 6 4.1855 2.0627 -2.1254 18 6 4.7410 2.2155 -3.5639 19 6 3.4866 2.6288 -4.3733 20 6 2.3452 1.7969 -3.7530 21 1 -0.3634 0.4432 0.9271 22 1 -0.3633 0.5814 -0.8474 23 1 -0.3633 -1.0246 -0.0798 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.5989 0.8143 1.2624 27 1 4.0524 1.0847 -0.4374 28 1 3.8096 3.4829 -0.1949 29 1 3.0953 3.2994 1.4251 30 1 4.8115 2.9091 1.1598 31 1 -0.0660 4.1534 1.1657 32 1 2.8456 0.3549 -2.2119 33 1 4.1022 3.0368 -1.6433 34 1 4.8207 1.3989 -1.5389 35 1 5.1394 1.2678 -3.9261 36 1 5.5022 2.9945 -3.6066 37 1 3.6127 2.3781 -5.4266 38 1 3.2890 3.6943 -4.2568 39 1 2.1867 0.8886 -4.3343 40 1 1.4279 2.3850 -3.7222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:05 Heat of formation + Delta-G solvation = 5.908124 kcal Electronic energy + Delta-G solvation = -17613.191899 eV Core-core repulsion = 15235.023461 eV Total energy + Delta-G solvation = -2378.168438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60217 -37.05350 -34.32163 -32.84293 -31.14184 -29.22691 -28.55431 -27.61417 -24.16652 -22.88137 -21.43424 -21.32697 -19.96244 -18.35602 -16.80362 -16.67943 -16.11314 -15.64799 -15.20972 -14.52651 -14.18935 -14.07708 -13.82302 -13.55043 -13.27275 -12.99273 -12.67385 -12.50294 -12.28160 -12.19775 -11.91742 -11.85602 -11.73836 -11.63182 -11.48845 -11.36384 -11.15831 -11.03295 -10.82916 -10.29123 -10.11753 -8.20830 -7.70883 -5.80945 1.43396 1.50322 1.54987 2.57862 3.38023 3.81921 3.98691 4.05047 4.12930 4.37458 4.53588 4.63673 4.71515 4.72688 4.85817 4.87481 4.92731 4.95462 5.00672 5.05274 5.11041 5.19550 5.21246 5.25312 5.30613 5.38453 5.47019 5.51746 5.58284 5.60934 5.69383 5.78155 5.83941 6.03377 6.18511 6.47902 6.89644 7.15741 7.37511 7.77558 9.26683 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.015172 C = 0.011157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.350626 B = 1845.097905 C = 2509.021633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 N -0.515 5.515 4 C 0.048 3.952 5 C -0.135 4.135 6 C 0.229 3.771 7 H 0.002 0.998 8 C -0.503 4.503 9 H 0.061 0.939 10 C 0.046 3.954 11 N -0.867 5.867 12 Si 0.908 3.092 13 H -0.267 1.267 14 H -0.293 1.293 15 H -0.292 1.292 16 C -0.114 4.114 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.107 4.107 21 H 0.038 0.962 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.019 0.981 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.243 0.757 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -4.937 -5.161 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 N -0.238 5.238 4 C -0.080 4.080 5 C -0.192 4.192 6 C 0.122 3.878 7 H 0.020 0.980 8 C -0.542 4.542 9 H 0.079 0.921 10 C -0.157 4.157 11 N -0.504 5.504 12 Si 0.737 3.263 13 H -0.191 1.191 14 H -0.220 1.220 15 H -0.219 1.219 16 C -0.134 4.134 17 C -0.165 4.165 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.145 4.145 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.758 -4.655 -4.646 8.741 hybrid contribution -0.052 0.720 -0.048 0.724 sum 5.706 -3.935 -4.693 8.371 Atomic orbital electron populations 1.21509 0.95771 0.99643 1.00877 1.22021 0.95997 0.91272 0.98587 1.62399 1.16351 1.13163 1.31916 1.22354 0.90087 0.97043 0.98484 1.22052 0.96801 0.97717 1.02602 1.19235 0.92050 0.93029 0.83446 0.98024 1.21093 1.20519 0.92300 1.20293 0.92150 1.25351 0.95779 0.98823 0.95715 1.70276 1.25632 1.34242 1.20293 0.86306 0.77365 0.85271 0.77372 1.19141 1.21997 1.21897 1.22327 0.97372 0.97413 0.96318 1.23126 0.94626 1.02416 0.96380 1.22548 0.96935 1.00852 0.95574 1.22249 0.94855 0.99219 0.98903 1.22006 0.98459 0.98849 0.95198 0.94285 0.94916 0.91782 0.96294 0.92422 0.94420 0.92746 0.89715 0.95709 0.94712 0.94704 0.93949 0.89539 0.91906 0.91384 0.91564 0.90931 0.92994 0.92483 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 10.05 71.98 0.72 -4.02 16 2 C 0.05 1.97 5.59 86.30 0.48 2.45 16 3 N -0.51 -23.32 3.49 -875.40 -3.06 -26.38 16 4 C 0.05 1.95 5.13 86.30 0.44 2.39 16 5 C -0.13 -5.75 8.12 71.98 0.58 -5.17 16 6 C 0.23 10.61 1.38 44.17 0.06 10.67 16 7 H 0.00 0.10 6.12 -2.39 -0.01 0.09 16 8 C -0.50 -25.07 4.58 25.60 0.12 -24.96 16 9 H 0.06 2.99 5.92 -2.91 -0.02 2.98 16 10 C 0.05 2.44 4.16 84.66 0.35 2.79 16 11 N -0.87 -48.81 12.54 21.45 0.27 -48.54 16 12 Si 0.91 42.60 29.54 68.60 2.03 44.63 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 16 C -0.11 -4.38 2.20 -10.07 -0.02 -4.41 16 17 C -0.13 -4.53 4.04 31.70 0.13 -4.41 16 18 C -0.12 -3.55 6.91 31.91 0.22 -3.33 16 19 C -0.11 -3.52 6.83 31.67 0.22 -3.31 16 20 C -0.11 -3.77 6.21 31.31 0.19 -3.57 16 21 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.03 1.42 6.47 -2.39 -0.02 1.40 16 23 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.02 0.72 6.28 -2.38 -0.01 0.70 16 25 H 0.06 2.13 7.74 -2.39 -0.02 2.11 16 26 H 0.04 1.47 7.76 -2.39 -0.02 1.45 16 27 H 0.06 2.07 3.43 -2.39 -0.01 2.06 16 28 H 0.08 3.78 3.31 -2.39 -0.01 3.78 16 29 H 0.02 1.19 7.52 -2.38 -0.02 1.18 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 32 H 0.04 1.61 6.32 -2.39 -0.02 1.59 16 33 H 0.09 3.47 3.14 -2.39 -0.01 3.46 16 34 H 0.06 2.10 5.91 -2.39 -0.01 2.08 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.04 1.79 7.53 -2.39 -0.02 1.77 16 Total: -1.00 -55.54 283.00 3.74 -51.80 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.01 Total: 13.35 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.50 Total: -34.86 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -2.79 Total: -74.91 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -55.54 3.74 -51.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -55.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds