Wall clock time and date at job start Mon Mar 30 2020 03:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47393 * 270.00542 * 3 2 1 5 5 H 1.48505 * 109.47173 * 30.00057 * 3 2 1 6 6 H 1.48500 * 109.47329 * 149.99847 * 3 2 1 7 7 C 1.37881 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99741 * 179.97438 * 7 2 1 10 10 H 1.09001 * 110.12299 * 58.32075 * 9 7 2 11 11 C 1.53634 * 110.14459 * 180.02562 * 9 7 2 12 12 C 1.51139 * 104.73847 * 119.20439 * 11 9 7 13 13 O 1.21327 * 126.09074 * 180.02562 * 12 11 9 14 14 C 1.46326 * 107.82383 * 359.97438 * 12 11 9 15 15 C 1.47446 * 142.62368 * 180.02562 * 14 12 11 16 16 C 1.34164 * 105.83737 * 180.02562 * 15 14 12 17 17 Cl 1.73598 * 125.40929 * 180.02562 * 16 15 14 18 18 O 1.34144 * 109.19017 * 359.97438 * 16 15 14 19 19 C 1.34123 * 110.96055 * 0.02562 * 18 16 15 20 20 H 0.96997 * 120.00671 * 359.97438 * 1 2 3 21 21 H 1.09006 * 110.38881 * 0.38611 * 11 9 7 22 22 H 1.09005 * 110.38619 * 238.01710 * 11 9 7 23 23 H 1.08005 * 127.08169 * 0.03238 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8869 -0.6568 0.8698 11 6 4.0407 -2.6364 -0.0023 12 6 4.8421 -2.7509 -1.2785 13 8 5.4332 -3.7374 -1.6652 14 6 4.7774 -1.4605 -1.9654 15 6 5.2365 -0.7524 -3.1744 16 6 4.7308 0.4872 -3.0870 17 17 4.9604 1.7519 -4.2538 18 8 4.0185 0.5940 -1.9552 19 6 4.0327 -0.5582 -1.2689 20 1 -0.4851 0.8400 0.0004 21 1 3.2122 -3.3448 -0.0093 22 1 4.6799 -2.8071 0.8640 23 1 5.8530 -1.1497 -3.9673 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260296797.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:25 Heat of formation + Delta-G solvation = -24.129720 kcal Electronic energy + Delta-G solvation = -13330.237785 eV Core-core repulsion = 10750.424933 eV Total energy + Delta-G solvation = -2579.812852 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.83867 -40.22462 -38.13016 -37.14568 -34.62698 -33.23200 -29.44732 -28.78127 -24.90754 -23.40921 -21.43844 -21.00664 -19.23317 -18.27696 -17.64383 -16.86163 -16.46375 -15.89500 -15.73309 -14.94012 -14.70284 -14.37589 -14.10600 -13.55378 -13.29474 -12.99107 -12.45515 -12.35656 -12.20341 -11.85335 -11.79947 -10.94949 -10.86859 -10.70951 -9.51289 -8.45452 -6.54711 -0.07887 0.08995 0.61348 1.24096 1.37725 1.41624 1.88946 1.98267 2.24911 2.94328 3.23626 3.71429 3.76390 4.11473 4.17979 4.38013 4.41946 4.71191 4.95446 5.08543 5.14187 5.33612 5.78494 6.05495 6.49364 6.55479 7.11990 8.67674 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.016069 C = 0.009642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.121753 B = 1742.055479 C = 2903.231104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.037 3.963 3 Si 0.907 3.093 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.087 3.913 10 H 0.087 0.913 11 C -0.136 4.136 12 C 0.441 3.559 13 O -0.490 6.490 14 C -0.335 4.335 15 C -0.112 4.112 16 C -0.011 4.011 17 Cl 0.040 6.960 18 O -0.172 6.172 19 C 0.081 3.919 20 H 0.272 0.728 21 H 0.120 0.880 22 H 0.145 0.855 23 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.194 2.696 -3.372 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.165 4.165 3 Si 0.732 3.268 4 H -0.176 1.176 5 H -0.208 1.208 6 H -0.163 1.163 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.068 3.932 10 H 0.105 0.895 11 C -0.172 4.172 12 C 0.323 3.677 13 O -0.369 6.369 14 C -0.337 4.337 15 C -0.131 4.131 16 C -0.083 4.083 17 Cl 0.069 6.931 18 O -0.070 6.070 19 C 0.027 3.973 20 H 0.082 0.918 21 H 0.138 0.862 22 H 0.163 0.837 23 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.200 2.673 -3.592 11.140 hybrid contribution -0.240 1.159 -0.558 1.308 sum 9.960 3.832 -4.150 11.451 Atomic orbital electron populations 1.69975 1.07981 1.28720 1.49152 1.25747 0.95329 1.02518 0.92930 0.86206 0.80047 0.80279 0.80233 1.17637 1.20753 1.16346 1.21181 0.88732 0.94413 1.51737 0.91721 1.18929 0.95440 0.91950 0.86893 0.89532 1.22493 1.01004 0.96418 0.97315 1.21839 0.75776 0.83652 0.86412 1.90474 1.39811 1.35959 1.70680 1.22860 1.10863 1.00028 0.99996 1.22356 1.02309 0.89909 0.98558 1.22585 1.03371 0.93133 0.89244 1.98393 1.94916 1.50502 1.49296 1.83959 1.58333 1.35495 1.29249 1.25689 0.91567 0.81736 0.98259 0.91821 0.86243 0.83730 0.79383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.96 21.45 0.30 -52.84 14 2 C 0.04 1.97 5.45 84.66 0.46 2.43 14 3 Si 0.91 40.84 24.27 68.60 1.67 42.50 14 4 H -0.25 -11.32 6.07 99.48 0.60 -10.72 14 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 14 6 H -0.24 -9.86 6.50 99.48 0.65 -9.22 14 7 C -0.52 -26.42 9.11 25.60 0.23 -26.19 14 8 H 0.06 3.53 7.59 -2.91 -0.02 3.50 14 9 C 0.09 3.52 2.45 -11.94 -0.03 3.49 14 10 H 0.09 3.24 7.11 -2.39 -0.02 3.22 14 11 C -0.14 -4.52 6.55 30.20 0.20 -4.33 14 12 C 0.44 16.45 7.76 27.93 0.22 16.67 14 13 O -0.49 -19.78 18.03 -3.18 -0.06 -19.84 14 14 C -0.33 -12.97 7.11 -19.23 -0.14 -13.11 14 15 C -0.11 -3.79 11.15 23.77 0.27 -3.52 14 16 C -0.01 -0.38 7.88 66.89 0.53 0.15 14 17 Cl 0.04 1.13 29.29 -2.72 -0.08 1.05 14 18 O -0.17 -7.19 6.69 0.76 0.01 -7.19 14 19 C 0.08 3.39 6.17 25.33 0.16 3.54 14 20 H 0.27 14.79 8.31 -92.71 -0.77 14.02 14 21 H 0.12 4.01 7.40 -2.38 -0.02 4.00 14 22 H 0.15 3.66 8.14 -2.38 -0.02 3.64 14 23 H 0.19 5.08 8.06 -2.91 -0.02 5.06 14 Total: -1.00 -60.31 222.16 4.81 -55.50 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.09 Total: 1.68 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 1.89 Total: -20.87 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.30 Total: -52.84 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.67 Total: 42.50 kcal Atomic # 17 Polarization: 1.13 SS G_CDS: -0.08 Total: 1.05 kcal Total: -60.31 4.81 -55.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260296797.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.370 kcal (2) G-P(sol) polarization free energy of solvation -60.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds