Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47214 * 119.99357 * 2 1 3 5 5 C 1.50697 * 109.47640 * 292.38855 * 4 2 1 6 6 H 1.07999 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00262 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99982 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47351 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47117 * 60.00009 * 9 7 5 12 12 H 1.48507 * 109.47422 * 300.00216 * 9 7 5 13 13 C 1.52999 * 109.47058 * 239.99875 * 2 1 3 14 14 H 1.08992 * 109.69147 * 50.68383 * 13 2 1 15 15 C 1.53988 * 109.69143 * 290.13515 * 13 2 1 16 16 C 1.45880 * 112.66053 * 158.90301 * 15 13 2 17 17 C 1.54517 * 111.67475 * 61.49891 * 16 15 13 18 18 C 1.50541 * 108.86091 * 282.75122 * 17 16 15 19 19 C 1.53918 * 112.93502 * 91.75497 * 18 17 16 20 20 N 1.44304 * 109.69385 * 171.27329 * 13 2 1 21 21 C 1.46898 * 111.00048 * 341.05435 * 20 13 2 22 22 H 1.09009 * 109.47070 * 305.97723 * 1 2 3 23 23 H 1.08997 * 109.47326 * 65.98573 * 1 2 3 24 24 H 1.08998 * 109.47219 * 185.98722 * 1 2 3 25 25 H 1.09006 * 109.47289 * 172.38537 * 4 2 1 26 26 H 1.09005 * 109.47148 * 52.38886 * 4 2 1 27 27 H 0.97000 * 120.00071 * 359.97438 * 8 7 5 28 28 H 1.09000 * 108.84442 * 279.72250 * 15 13 2 29 29 H 1.08998 * 108.84523 * 38.08492 * 15 13 2 30 30 H 1.08995 * 109.04020 * 182.06412 * 16 15 13 31 31 H 1.09002 * 109.03684 * 301.00872 * 16 15 13 32 32 H 1.09000 * 109.57171 * 42.56307 * 17 16 15 33 33 H 1.08998 * 109.57232 * 162.81462 * 17 16 15 34 34 H 1.08997 * 108.79244 * 212.64278 * 18 17 16 35 35 H 1.09000 * 108.79068 * 330.86835 * 18 17 16 36 36 H 1.08999 * 108.71243 * 78.75251 * 19 18 17 37 37 H 1.08999 * 108.71376 * 196.89314 * 19 18 17 38 38 H 1.09007 * 109.46969 * 54.70531 * 21 20 13 39 39 H 1.09003 * 109.47148 * 174.70152 * 21 20 13 40 40 H 1.08997 * 109.47333 * 294.70663 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6973 0.0896 2.4725 6 1 1.1689 1.0259 2.3691 7 6 2.0583 -0.3638 3.7236 8 7 2.7021 -1.5036 3.8494 9 14 1.6341 0.6415 5.2397 10 1 2.1290 -0.0584 6.4523 11 1 0.1608 0.8053 5.3287 12 1 2.2757 1.9774 5.1433 13 6 2.0400 -0.7213 -1.2492 14 1 1.5494 -0.3152 -2.1337 15 6 1.7424 -2.2279 -1.1363 16 6 1.7363 -2.8982 -2.4319 17 6 3.1106 -2.8006 -3.1314 18 6 3.2611 -1.4226 -3.7185 19 6 3.9439 -0.4326 -2.7578 20 7 3.4682 -0.5482 -1.3617 21 6 3.9258 0.5900 -0.5536 22 1 -0.3634 0.6038 0.8317 23 1 -0.3634 0.4182 -0.9387 24 1 -0.3633 -1.0220 0.1072 25 1 3.1215 -0.8406 1.1839 26 1 1.5698 -1.7020 1.3201 27 1 2.9227 -2.0255 3.0620 28 1 2.5006 -2.6901 -0.5043 29 1 0.7675 -2.3600 -0.6670 30 1 1.4847 -3.9489 -2.2875 31 1 0.9812 -2.4361 -3.0678 32 1 3.9036 -2.9764 -2.4045 33 1 3.1705 -3.5459 -3.9245 34 1 3.8540 -1.4922 -4.6305 35 1 2.2729 -1.0396 -3.9731 36 1 5.0189 -0.6118 -2.7769 37 1 3.7530 0.5820 -3.1074 38 1 3.5940 0.4608 0.4767 39 1 5.0143 0.6408 -0.5811 40 1 3.5086 1.5128 -0.9566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260351206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -10.904621 kcal Electronic energy + Delta-G solvation = -17012.950343 eV Core-core repulsion = 14634.052849 eV Total energy + Delta-G solvation = -2378.897493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58843 -35.48380 -34.00639 -32.55545 -30.40426 -27.66332 -26.26399 -25.21741 -23.79182 -22.48187 -20.94109 -19.86125 -17.99091 -16.60774 -15.83646 -15.49536 -14.65618 -13.90402 -13.70230 -13.51989 -13.46536 -13.05114 -12.95453 -12.50968 -11.83564 -11.63480 -11.48136 -11.29230 -11.13569 -10.86768 -10.69052 -10.58254 -10.32677 -10.28299 -10.08408 -10.03406 -9.74385 -9.59901 -9.25594 -8.36046 -8.20471 -7.64048 -6.25967 -3.94214 3.47461 3.49026 3.67743 4.33980 4.60846 4.89515 5.07869 5.16856 5.38770 5.50210 5.50779 5.55548 5.72942 5.78042 5.84092 5.91703 6.03563 6.06364 6.11902 6.13345 6.19919 6.26094 6.35917 6.45970 6.53446 6.57936 6.65859 6.71227 6.86205 6.89701 7.00799 7.15726 7.60216 7.63811 7.67180 7.84677 8.33673 8.57322 8.99520 9.76956 11.14418 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.007475 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.045126 B = 3744.755562 C = 3848.922988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.063 0.937 4 C 0.016 3.984 5 C -0.599 4.599 6 H 0.045 0.955 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.102 3.898 14 H 0.033 0.967 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.063 3.937 20 N -0.540 5.540 21 C 0.007 3.993 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.048 0.952 25 H 0.025 0.975 26 H 0.009 0.991 27 H 0.270 0.730 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.115 0.885 39 H 0.051 0.949 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 0.559 -13.250 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.021 4.021 5 C -0.638 4.638 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.551 5.551 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.216 1.216 13 C -0.006 4.006 14 H 0.051 0.949 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.065 4.065 20 N -0.265 5.265 21 C -0.140 4.140 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.235 0.188 -11.424 11.428 hybrid contribution -0.523 0.795 -2.105 2.310 sum -0.288 0.983 -13.529 13.568 Atomic orbital electron populations 1.21715 0.96178 1.01297 0.99590 1.21527 0.95106 0.99294 0.95200 0.91847 1.19419 0.96156 0.95338 0.91152 1.22107 1.40662 1.08155 0.92858 0.93649 1.25729 0.94604 0.97454 1.01112 1.70759 1.37544 1.13038 1.33762 0.83616 0.76016 0.75123 0.75949 1.20905 1.21660 1.21627 1.21382 0.86552 0.95619 0.97091 0.94941 1.20530 1.02098 0.95317 0.96888 1.20591 0.96580 1.00060 0.97658 1.21294 0.98478 0.95559 0.99586 1.21358 1.00484 0.95942 0.97663 1.22365 0.99386 0.96593 0.88126 1.60707 1.13672 1.42781 1.09313 1.22915 0.99321 0.90055 1.01728 0.92154 0.95215 0.93302 0.95710 0.97278 0.91970 0.90959 0.92073 0.92766 0.93270 0.90777 0.92923 0.92167 0.92657 0.91657 0.95872 0.86702 0.93012 0.96755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.69 37.16 0.32 -2.18 16 2 C -0.09 -1.90 1.55 -90.62 -0.14 -2.04 16 3 H 0.06 1.34 5.90 -51.93 -0.31 1.04 16 4 C 0.02 0.39 2.13 -27.88 -0.06 0.33 16 5 C -0.60 -16.70 8.50 -34.44 -0.29 -16.99 16 6 H 0.05 1.25 7.24 -52.49 -0.38 0.87 16 7 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 8 N -0.91 -28.04 13.65 55.43 0.76 -27.28 16 9 Si 1.06 25.47 29.90 -169.99 -5.08 20.39 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.10 1.82 1.69 -68.59 -0.12 1.71 16 14 H 0.03 0.56 6.75 -51.93 -0.35 0.21 16 15 C -0.11 -1.90 3.53 -29.59 -0.10 -2.01 16 16 C -0.11 -1.58 5.35 -29.30 -0.16 -1.73 16 17 C -0.11 -1.46 5.63 -27.16 -0.15 -1.61 16 18 C -0.12 -1.47 5.28 -27.48 -0.14 -1.61 16 19 C 0.06 0.90 5.44 -2.77 -0.02 0.89 16 20 N -0.54 -9.41 4.07 -234.77 -0.96 -10.37 16 21 C 0.01 0.12 7.87 60.06 0.47 0.60 16 22 H 0.06 1.23 7.31 -51.92 -0.38 0.85 16 23 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 24 H 0.05 0.93 6.67 -51.93 -0.35 0.58 16 25 H 0.02 0.66 5.76 -51.93 -0.30 0.36 16 26 H 0.01 0.24 6.93 -51.93 -0.36 -0.12 16 27 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 28 H 0.07 1.41 7.71 -51.93 -0.40 1.01 16 29 H 0.06 1.10 6.08 -51.93 -0.32 0.78 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.66 7.58 -51.93 -0.39 0.27 16 32 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.71 6.66 -51.93 -0.35 0.36 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.02 0.33 8.01 -51.93 -0.42 -0.09 16 38 H 0.11 2.48 3.89 -51.93 -0.20 2.28 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -29.24 287.93 -8.34 -37.59 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.92 Total: -0.33 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -0.48 Total: -24.33 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.20 Total: -37.65 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.24 -8.34 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.682 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds