Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47214 * 119.99357 * 2 1 3 5 5 C 1.50697 * 109.47640 * 292.38855 * 4 2 1 6 6 H 1.07999 * 119.99610 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00262 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99982 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47351 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47117 * 60.00009 * 9 7 5 12 12 H 1.48507 * 109.47422 * 300.00216 * 9 7 5 13 13 C 1.52999 * 109.47058 * 239.99875 * 2 1 3 14 14 H 1.08992 * 109.69147 * 50.68383 * 13 2 1 15 15 C 1.53988 * 109.69143 * 290.13515 * 13 2 1 16 16 C 1.45880 * 112.66053 * 158.90301 * 15 13 2 17 17 C 1.54517 * 111.67475 * 61.49891 * 16 15 13 18 18 C 1.50541 * 108.86091 * 282.75122 * 17 16 15 19 19 C 1.53918 * 112.93502 * 91.75497 * 18 17 16 20 20 N 1.44304 * 109.69385 * 171.27329 * 13 2 1 21 21 C 1.46898 * 111.00048 * 341.05435 * 20 13 2 22 22 H 1.09009 * 109.47070 * 305.97723 * 1 2 3 23 23 H 1.08997 * 109.47326 * 65.98573 * 1 2 3 24 24 H 1.08998 * 109.47219 * 185.98722 * 1 2 3 25 25 H 1.09006 * 109.47289 * 172.38537 * 4 2 1 26 26 H 1.09005 * 109.47148 * 52.38886 * 4 2 1 27 27 H 0.97000 * 120.00071 * 359.97438 * 8 7 5 28 28 H 1.09000 * 108.84442 * 279.72250 * 15 13 2 29 29 H 1.08998 * 108.84523 * 38.08492 * 15 13 2 30 30 H 1.08995 * 109.04020 * 182.06412 * 16 15 13 31 31 H 1.09002 * 109.03684 * 301.00872 * 16 15 13 32 32 H 1.09000 * 109.57171 * 42.56307 * 17 16 15 33 33 H 1.08998 * 109.57232 * 162.81462 * 17 16 15 34 34 H 1.08997 * 108.79244 * 212.64278 * 18 17 16 35 35 H 1.09000 * 108.79068 * 330.86835 * 18 17 16 36 36 H 1.08999 * 108.71243 * 78.75251 * 19 18 17 37 37 H 1.08999 * 108.71376 * 196.89314 * 19 18 17 38 38 H 1.09007 * 109.46969 * 54.70531 * 21 20 13 39 39 H 1.09003 * 109.47148 * 174.70152 * 21 20 13 40 40 H 1.08997 * 109.47333 * 294.70663 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6973 0.0896 2.4725 6 1 1.1689 1.0259 2.3691 7 6 2.0583 -0.3638 3.7236 8 7 2.7021 -1.5036 3.8494 9 14 1.6341 0.6415 5.2397 10 1 2.1290 -0.0584 6.4523 11 1 0.1608 0.8053 5.3287 12 1 2.2757 1.9774 5.1433 13 6 2.0400 -0.7213 -1.2492 14 1 1.5494 -0.3152 -2.1337 15 6 1.7424 -2.2279 -1.1363 16 6 1.7363 -2.8982 -2.4319 17 6 3.1106 -2.8006 -3.1314 18 6 3.2611 -1.4226 -3.7185 19 6 3.9439 -0.4326 -2.7578 20 7 3.4682 -0.5482 -1.3617 21 6 3.9258 0.5900 -0.5536 22 1 -0.3634 0.6038 0.8317 23 1 -0.3634 0.4182 -0.9387 24 1 -0.3633 -1.0220 0.1072 25 1 3.1215 -0.8406 1.1839 26 1 1.5698 -1.7020 1.3201 27 1 2.9227 -2.0255 3.0620 28 1 2.5006 -2.6901 -0.5043 29 1 0.7675 -2.3600 -0.6670 30 1 1.4847 -3.9489 -2.2875 31 1 0.9812 -2.4361 -3.0678 32 1 3.9036 -2.9764 -2.4045 33 1 3.1705 -3.5459 -3.9245 34 1 3.8540 -1.4922 -4.6305 35 1 2.2729 -1.0396 -3.9731 36 1 5.0189 -0.6118 -2.7769 37 1 3.7530 0.5820 -3.1074 38 1 3.5940 0.4608 0.4767 39 1 5.0143 0.6408 -0.5811 40 1 3.5086 1.5128 -0.9566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260351206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = -27.870239 kcal Electronic energy + Delta-G solvation = -17013.686027 eV Core-core repulsion = 14634.052849 eV Total energy + Delta-G solvation = -2379.633178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99479 -36.97779 -35.43111 -34.48617 -31.82625 -29.25367 -27.97905 -26.62009 -25.39782 -24.23682 -22.38365 -21.04635 -19.57865 -18.66417 -17.27385 -16.81996 -15.93823 -15.67836 -15.30686 -15.13448 -14.86309 -14.49269 -14.25823 -14.00655 -13.43877 -13.31039 -13.07624 -12.83301 -12.66297 -12.43329 -12.36143 -11.96672 -11.90543 -11.57281 -11.53896 -11.46218 -11.25908 -11.20417 -10.94049 -10.45568 -10.38463 -8.98817 -8.58681 -6.27121 1.52236 1.60500 1.79199 2.60015 3.02858 3.24789 3.79135 3.86696 3.95850 4.14636 4.17218 4.34391 4.38146 4.39556 4.50888 4.61437 4.65163 4.69948 4.80671 4.84599 4.88626 5.00898 5.06044 5.09668 5.19522 5.25107 5.29425 5.34860 5.35376 5.43682 5.49829 5.56997 5.60537 5.72849 6.12216 6.24171 6.31499 6.49291 6.70314 7.53047 8.81519 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.007475 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.045126 B = 3744.755562 C = 3848.922988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 H 0.057 0.943 4 C 0.031 3.969 5 C -0.607 4.607 6 H 0.045 0.955 7 C -0.040 4.040 8 N -0.941 5.941 9 Si 1.111 2.889 10 H -0.286 1.286 11 H -0.272 1.272 12 H -0.271 1.271 13 C 0.111 3.889 14 H 0.050 0.950 15 C -0.102 4.102 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.114 4.114 19 C 0.060 3.940 20 N -0.556 5.556 21 C 0.015 3.985 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.004 0.996 26 H -0.017 1.017 27 H 0.254 0.746 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 1.426 -15.165 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.645 4.645 6 H 0.064 0.936 7 C -0.237 4.237 8 N -0.579 5.579 9 Si 0.934 3.066 10 H -0.212 1.212 11 H -0.197 1.197 12 H -0.196 1.196 13 C 0.002 3.998 14 H 0.068 0.932 15 C -0.140 4.140 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.067 4.067 20 N -0.281 5.281 21 C -0.132 4.132 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.001 0.999 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.290 1.062 -13.372 13.417 hybrid contribution -0.333 0.518 -1.533 1.652 sum -0.623 1.580 -14.905 15.002 Atomic orbital electron populations 1.21656 0.95004 1.01019 1.00660 1.21411 0.96070 0.98589 0.94567 0.92471 1.19212 0.94689 0.94055 0.92626 1.22512 1.39683 1.08206 0.94074 0.93624 1.27238 0.93981 0.97674 1.04836 1.70898 1.39723 1.14337 1.32981 0.83006 0.76954 0.74403 0.72279 1.21199 1.19710 1.19605 1.21255 0.87100 0.95480 0.95965 0.93172 1.20460 1.00140 0.95198 0.98222 1.20573 0.98005 1.00228 0.96053 1.21268 0.96782 0.96870 0.99665 1.21367 1.01016 0.94775 0.97956 1.22488 0.99965 0.97796 0.86453 1.60679 1.13318 1.42612 1.11494 1.22689 1.00011 0.90808 0.99697 0.93839 0.91901 0.93679 0.97750 0.99905 0.93614 0.94293 0.93359 0.92010 0.91659 0.92906 0.90417 0.89436 0.92260 0.91016 0.95056 0.90701 0.91865 0.95821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.69 71.98 0.63 -4.12 16 2 C -0.09 -3.61 1.55 -10.79 -0.02 -3.63 16 3 H 0.06 2.42 5.90 -2.39 -0.01 2.41 16 4 C 0.03 1.59 2.13 29.85 0.06 1.66 16 5 C -0.61 -34.62 8.50 25.60 0.22 -34.40 16 6 H 0.05 2.55 7.24 -2.91 -0.02 2.53 16 7 C -0.04 -2.36 5.46 84.66 0.46 -1.90 16 8 N -0.94 -59.63 13.65 21.45 0.29 -59.34 16 9 Si 1.11 51.40 29.90 68.60 2.05 53.45 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.11 3.86 1.69 45.73 0.08 3.93 16 14 H 0.05 1.60 6.75 -2.39 -0.02 1.58 16 15 C -0.10 -3.52 3.53 28.74 0.10 -3.42 16 16 C -0.11 -2.94 5.35 28.93 0.15 -2.78 16 17 C -0.11 -2.56 5.63 30.31 0.17 -2.39 16 18 C -0.11 -2.46 5.28 30.11 0.16 -2.30 16 19 C 0.06 1.57 5.44 86.41 0.47 2.04 16 20 N -0.56 -19.01 4.07 -896.69 -3.65 -22.66 16 21 C 0.02 0.56 7.87 127.69 1.00 1.57 16 22 H 0.04 1.75 7.31 -2.38 -0.02 1.74 16 23 H 0.06 1.94 8.11 -2.39 -0.02 1.92 16 24 H 0.04 1.71 6.67 -2.39 -0.02 1.69 16 25 H 0.00 0.25 5.76 -2.38 -0.01 0.24 16 26 H -0.02 -0.98 6.93 -2.38 -0.02 -0.99 16 27 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 28 H 0.04 1.58 7.71 -2.39 -0.02 1.56 16 29 H 0.05 1.76 6.08 -2.39 -0.01 1.74 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.54 7.58 -2.39 -0.02 1.53 16 32 H 0.05 1.48 7.78 -2.39 -0.02 1.47 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.26 6.66 -2.39 -0.02 1.25 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.03 0.78 8.01 -2.39 -0.02 0.76 16 38 H 0.07 3.34 3.89 -2.38 -0.01 3.33 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.02 0.79 7.56 -2.39 -0.02 0.77 16 Total: -1.00 -64.52 287.93 3.27 -61.25 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.09 Total: 13.05 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 3.49 Total: -45.75 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.36 Total: -82.00 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -64.52 3.27 -61.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.377 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds