Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47271 * 2 1 4 4 C 1.52996 * 109.46727 * 239.99868 * 2 1 3 5 5 C 1.50693 * 109.47398 * 65.88820 * 4 2 1 6 6 H 1.07997 * 120.00210 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99626 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00012 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47102 * 89.99818 * 9 7 5 11 11 H 1.48498 * 109.46906 * 210.00108 * 9 7 5 12 12 H 1.48499 * 109.46920 * 329.99787 * 9 7 5 13 13 C 1.52999 * 109.46886 * 120.00131 * 2 1 3 14 14 H 1.09000 * 108.76453 * 306.85761 * 13 2 1 15 15 C 1.45865 * 108.79529 * 65.21689 * 13 2 1 16 16 C 1.54511 * 111.59593 * 182.20742 * 15 13 2 17 17 C 1.50462 * 108.84679 * 282.79760 * 16 15 13 18 18 C 1.54290 * 113.03111 * 92.15822 * 17 16 15 19 19 C 1.54065 * 112.29158 * 318.30723 * 18 17 16 20 20 N 1.44274 * 111.98176 * 318.91160 * 19 18 17 21 21 C 1.46900 * 111.00050 * 219.31445 * 20 19 18 22 22 H 1.08998 * 109.47689 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47434 * 300.00300 * 1 2 3 24 24 H 1.09004 * 109.47089 * 59.99447 * 1 2 3 25 25 H 1.09007 * 109.46810 * 185.88894 * 4 2 1 26 26 H 1.08994 * 109.47435 * 305.88406 * 4 2 1 27 27 H 0.97008 * 119.99327 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.05551 * 302.75126 * 15 13 2 29 29 H 1.09001 * 109.05321 * 61.66432 * 15 13 2 30 30 H 1.09007 * 109.57439 * 42.60346 * 16 15 13 31 31 H 1.08999 * 109.57381 * 162.85656 * 16 15 13 32 32 H 1.08997 * 108.76906 * 213.08036 * 17 16 15 33 33 H 1.08998 * 108.76899 * 331.36180 * 17 16 15 34 34 H 1.09003 * 108.91050 * 79.02962 * 18 17 16 35 35 H 1.08999 * 108.91775 * 197.67315 * 18 17 16 36 36 H 1.09000 * 108.97949 * 79.54867 * 19 18 17 37 37 H 1.08996 * 108.97869 * 198.35335 * 19 18 17 38 38 H 1.08999 * 109.46873 * 291.12022 * 21 20 19 39 39 H 1.09001 * 109.47281 * 51.11695 * 21 20 19 40 40 H 1.08999 * 109.47322 * 171.12146 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6601 0.0682 -2.4753 6 1 1.1104 0.9922 -2.3738 7 6 2.0153 -0.3887 -3.7269 8 7 2.6860 -1.5131 -3.8504 9 14 1.5451 0.5904 -5.2467 10 1 2.6253 1.5580 -5.5660 11 1 1.3550 -0.3351 -6.3924 12 1 0.2812 1.3264 -4.9899 13 6 2.0399 -0.7213 1.2492 14 1 1.5731 -0.2746 2.1271 15 6 1.6508 -2.1250 1.1732 16 6 2.0875 -2.9053 2.4333 17 6 3.5621 -3.1902 2.3418 18 6 4.4293 -2.1056 3.0141 19 6 3.9195 -0.6824 2.7167 20 7 3.5030 -0.5340 1.3434 21 6 3.9014 0.7760 0.8111 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1248 -0.8135 -1.1981 26 1 1.5931 -1.7140 -1.3035 27 1 2.9362 -1.8343 -4.7309 28 1 0.5674 -2.1890 1.0727 29 1 2.1156 -2.5761 0.2964 30 1 1.8856 -2.3068 3.3217 31 1 1.5353 -3.8432 2.4916 32 1 3.7645 -4.1481 2.8209 33 1 3.8415 -3.2586 1.2905 34 1 4.4220 -2.2655 4.0923 35 1 5.4529 -2.1960 2.6506 36 1 3.0737 -0.4653 3.3690 37 1 4.7180 0.0304 2.9227 38 1 3.3196 1.5584 1.2985 39 1 4.9619 0.9389 1.0029 40 1 3.7181 0.8027 -0.2630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260351225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = -28.385449 kcal Electronic energy + Delta-G solvation = -16955.901163 eV Core-core repulsion = 14576.245643 eV Total energy + Delta-G solvation = -2379.655519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94573 -36.68966 -35.23771 -34.44816 -31.69584 -29.27449 -28.33175 -26.41440 -25.15237 -24.48418 -22.56127 -20.41209 -19.57240 -18.44976 -17.07101 -16.50571 -16.36556 -15.74656 -15.47187 -14.81167 -14.50444 -14.35807 -14.12125 -13.96123 -13.51003 -13.13765 -12.99890 -12.73996 -12.68066 -12.63107 -12.26738 -12.19821 -11.97366 -11.53734 -11.48562 -11.32336 -11.19986 -11.11466 -10.75381 -10.62009 -10.43376 -9.01809 -8.11026 -6.19401 1.39823 1.40338 1.50880 2.44298 3.10431 3.21848 3.84918 4.00485 4.16400 4.25026 4.31561 4.41775 4.45642 4.51061 4.54794 4.69421 4.70959 4.81326 4.88216 4.93394 4.96047 5.02587 5.14689 5.20128 5.25989 5.34100 5.42579 5.44770 5.49747 5.53533 5.58664 5.63260 5.73279 5.97438 6.02550 6.30279 6.39811 6.51683 6.99539 7.47700 8.99962 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035252 B = 0.007525 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.098960 B = 3719.836540 C = 3730.806846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.058 0.942 4 C 0.051 3.949 5 C -0.529 4.529 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.931 5.931 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.104 3.896 14 H 0.043 0.957 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.110 4.110 18 C -0.104 4.104 19 C 0.052 3.948 20 N -0.541 5.541 21 C 0.029 3.971 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.043 0.957 25 H -0.001 1.001 26 H -0.013 1.013 27 H 0.259 0.741 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 0.956 14.564 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.077 0.923 4 C 0.014 3.986 5 C -0.568 4.568 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.003 4.003 14 H 0.061 0.939 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.077 4.077 20 N -0.265 5.265 21 C -0.119 4.119 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.017 0.983 26 H 0.006 0.994 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.462 0.487 14.155 14.171 hybrid contribution -0.414 0.863 -0.978 1.368 sum 0.048 1.350 13.177 13.246 Atomic orbital electron populations 1.21725 0.95166 1.01137 1.00722 1.21494 0.95866 0.98869 0.94957 0.92333 1.18887 0.94836 0.93729 0.91130 1.21738 1.34648 1.07732 0.92635 0.92723 1.25871 0.95470 0.96071 1.02312 1.70124 1.40661 1.22567 1.23889 0.85621 0.78869 0.78507 0.79083 1.20107 1.21116 1.18944 1.20497 0.86872 0.96523 0.96428 0.93918 1.20723 1.00346 0.95525 0.98535 1.21295 0.96156 0.99886 0.97040 1.21171 0.95008 0.98334 1.00241 1.21917 0.98750 0.93396 1.00114 1.22012 0.99789 0.97897 0.87976 1.61494 1.13678 1.31226 1.20143 1.22473 0.99966 0.88873 1.00601 0.93337 0.92085 0.93767 0.98299 0.99449 0.93232 0.91698 0.93804 0.91266 0.91438 0.91729 0.94590 0.90249 0.92718 0.93904 0.91232 0.95168 0.91050 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.72 71.98 0.63 -4.20 16 2 C -0.09 -3.82 1.56 -10.80 -0.02 -3.83 16 3 H 0.06 2.42 5.75 -2.39 -0.01 2.41 16 4 C 0.05 2.69 3.10 29.84 0.09 2.78 16 5 C -0.53 -30.15 8.41 25.60 0.22 -29.93 16 6 H 0.05 3.01 7.12 -2.91 -0.02 2.99 16 7 C 0.00 0.00 5.46 84.66 0.46 0.46 16 8 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 9 Si 0.95 45.21 29.54 68.60 2.03 47.23 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.10 3.61 1.39 42.55 0.06 3.67 16 14 H 0.04 1.34 7.22 -2.39 -0.02 1.32 16 15 C -0.11 -3.91 4.16 28.92 0.12 -3.79 16 16 C -0.11 -2.86 5.60 30.29 0.17 -2.69 16 17 C -0.11 -3.00 5.42 30.21 0.16 -2.83 16 18 C -0.10 -2.49 6.14 31.39 0.19 -2.30 16 19 C 0.05 1.36 5.17 87.15 0.45 1.82 16 20 N -0.54 -18.40 4.04 -912.37 -3.69 -22.09 16 21 C 0.03 0.97 7.88 127.69 1.01 1.97 16 22 H 0.05 1.78 6.44 -2.39 -0.02 1.77 16 23 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.04 1.78 7.01 -2.39 -0.02 1.76 16 25 H 0.00 -0.08 6.61 -2.38 -0.02 -0.09 16 26 H -0.01 -0.74 6.71 -2.39 -0.02 -0.76 16 27 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 28 H 0.06 2.16 6.19 -2.39 -0.01 2.15 16 29 H 0.04 1.87 5.78 -2.39 -0.01 1.85 16 30 H 0.07 1.64 7.15 -2.38 -0.02 1.63 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.23 7.38 -2.39 -0.02 1.21 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.05 6.51 -2.39 -0.02 1.03 16 37 H 0.07 1.64 7.37 -2.39 -0.02 1.62 16 38 H 0.03 0.92 7.68 -2.39 -0.02 0.90 16 39 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 40 H 0.05 2.30 5.36 -2.39 -0.01 2.29 16 Total: -1.00 -64.00 288.31 3.16 -60.84 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.99 Total: 10.47 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 3.54 Total: -38.88 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.40 Total: -79.66 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -64.00 3.16 -60.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.455 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds