Wall clock time and date at job start Mon Mar 30 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.53003 * 109.46824 * 120.00125 * 2 1 3 5 5 C 1.50707 * 109.47013 * 296.03689 * 4 2 1 6 6 H 1.07998 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99996 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00059 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47370 * 59.99553 * 9 7 5 12 12 H 1.48499 * 109.46921 * 300.00106 * 9 7 5 13 13 C 1.52999 * 109.47446 * 240.00120 * 2 1 3 14 14 H 1.09004 * 109.53949 * 301.66282 * 13 2 1 15 15 C 1.50747 * 109.54410 * 61.92668 * 13 2 1 16 16 C 1.54178 * 112.61535 * 212.87701 * 15 13 2 17 17 C 1.53815 * 111.96657 * 318.48260 * 16 15 13 18 18 C 1.50809 * 111.61751 * 319.04320 * 17 16 15 19 19 N 1.47634 * 108.03529 * 95.07208 * 18 17 16 20 20 C 1.46904 * 111.00125 * 150.30690 * 19 18 17 21 21 C 1.39775 * 114.76937 * 277.16797 * 19 18 17 22 22 H 1.09001 * 109.46684 * 63.45190 * 1 2 3 23 23 H 1.08997 * 109.46931 * 183.44419 * 1 2 3 24 24 H 1.08990 * 109.47125 * 303.44767 * 1 2 3 25 25 H 1.08996 * 109.47172 * 176.04400 * 4 2 1 26 26 H 1.08997 * 109.47431 * 56.03733 * 4 2 1 27 27 H 0.96995 * 119.99788 * 359.97438 * 8 7 5 28 28 H 1.09000 * 108.85591 * 333.68194 * 15 13 2 29 29 H 1.08998 * 108.85452 * 92.06946 * 15 13 2 30 30 H 1.08995 * 108.98372 * 197.84331 * 16 15 13 31 31 H 1.08999 * 108.98312 * 79.12162 * 16 15 13 32 32 H 1.09003 * 109.04930 * 198.48965 * 17 16 15 33 33 H 1.08996 * 109.05051 * 79.59757 * 17 16 15 34 34 H 1.08994 * 109.75404 * 335.43813 * 18 17 16 35 35 H 1.09001 * 109.75043 * 214.70035 * 18 17 16 36 36 H 1.08994 * 109.47208 * 188.90802 * 20 19 18 37 37 H 1.08995 * 109.47006 * 308.90820 * 20 19 18 38 38 H 1.09002 * 109.46872 * 68.91038 * 20 19 18 39 39 H 1.09002 * 109.02349 * 301.69261 * 21 19 18 40 40 H 1.08995 * 109.02733 * 182.85967 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6193 0.0436 2.4778 6 1 1.0454 0.9529 2.3775 7 6 1.9664 -0.4181 3.7298 8 7 2.6649 -1.5257 3.8519 9 14 1.4444 0.5295 5.2525 10 1 1.9395 -0.1705 6.4650 11 1 -0.0374 0.6140 5.2993 12 1 2.0169 1.8989 5.2037 13 6 2.0401 -0.7212 -1.2492 14 1 1.6533 -1.7402 -1.2654 15 6 1.5779 0.0152 -2.4807 16 6 1.3064 -0.9288 -3.6691 17 6 2.3795 -2.0241 -3.7906 18 6 3.7620 -1.4781 -3.5359 19 7 4.0912 -1.7117 -2.1158 20 6 5.5386 -1.8832 -1.9322 21 6 3.5841 -0.7550 -1.2321 22 1 -0.3633 0.4593 -0.9193 23 1 -0.3633 -1.0258 0.0617 24 1 -0.3633 0.5664 0.8574 25 1 3.1276 -0.7831 1.2146 26 1 1.6198 -1.7264 1.2855 27 1 2.9356 -2.0180 3.0612 28 1 0.6618 0.5564 -2.2445 29 1 2.3447 0.7339 -2.7699 30 1 1.2901 -0.3449 -4.5892 31 1 0.3330 -1.3998 -3.5325 32 1 2.3435 -2.4476 -4.7944 33 1 2.1686 -2.8108 -3.0663 34 1 3.7806 -0.4090 -3.7472 35 1 4.4838 -1.9922 -4.1706 36 1 5.7393 -2.2089 -0.9117 37 1 5.9073 -2.6330 -2.6321 38 1 6.0431 -0.9347 -2.1167 39 1 3.9640 0.2268 -1.5149 40 1 3.9231 -0.9884 -0.2228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:02 Heat of formation + Delta-G solvation = -23.146238 kcal Electronic energy + Delta-G solvation = -16632.343400 eV Core-core repulsion = 14252.915070 eV Total energy + Delta-G solvation = -2379.428330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51155 -35.86212 -34.09390 -32.57093 -29.95503 -27.78957 -26.62580 -24.66648 -24.44948 -22.62832 -20.67481 -19.62343 -18.73661 -16.66081 -15.78360 -15.29540 -14.77131 -14.48131 -13.82736 -13.62404 -13.48135 -13.31697 -12.63706 -12.20629 -12.07534 -11.98793 -11.49279 -11.36335 -11.20511 -10.91235 -10.87630 -10.70777 -10.55895 -10.26265 -10.13348 -10.05859 -9.81193 -9.54950 -9.11418 -8.36880 -8.22396 -7.95143 -6.26681 -3.94298 3.47502 3.49462 3.68055 4.17643 4.60879 4.95037 5.00720 5.16385 5.30462 5.40700 5.45649 5.50660 5.53880 5.66893 5.73137 5.81650 5.94132 5.99150 6.01694 6.04939 6.13936 6.17839 6.26833 6.36407 6.38609 6.49512 6.56284 6.70231 6.73455 7.04463 7.09417 7.16351 7.37212 7.53500 7.69544 7.71200 8.34028 8.56569 8.99031 9.76805 11.13711 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035281 B = 0.007097 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.432710 B = 3944.122328 C = 4517.508420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 H 0.053 0.947 4 C 0.015 3.985 5 C -0.595 4.595 6 H 0.048 0.952 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 1.065 2.935 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.289 1.289 13 C -0.077 4.077 14 H 0.074 0.926 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.118 4.118 18 C 0.065 3.935 19 N -0.556 5.556 20 C 0.031 3.969 21 C 0.072 3.928 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.010 0.990 26 H 0.006 0.994 27 H 0.268 0.732 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 0.851 -14.687 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.022 4.022 5 C -0.634 4.634 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.216 1.216 13 C -0.096 4.096 14 H 0.092 0.908 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.061 4.061 19 N -0.280 5.280 20 C -0.116 4.116 21 C -0.057 4.057 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.739 0.463 -12.910 12.939 hybrid contribution 0.308 0.805 -1.891 2.078 sum 1.046 1.268 -14.801 14.892 Atomic orbital electron populations 1.21760 0.96236 1.01031 0.99854 1.21045 0.95020 0.98838 0.94304 0.92848 1.19327 0.95391 0.95390 0.92078 1.22090 1.37808 1.11039 0.92425 0.93417 1.25782 0.94937 0.97061 1.01295 1.70770 1.35446 1.15556 1.33508 0.83595 0.75985 0.75179 0.75816 1.20877 1.21560 1.21608 1.21089 0.93723 1.00266 0.94473 0.90755 1.21626 1.01394 0.98079 0.94753 1.21896 0.98615 0.97004 0.97753 1.21401 0.94123 0.98975 1.01069 1.21794 0.97023 0.99015 0.88312 1.58845 1.12799 1.50881 1.05479 1.22334 0.87254 0.99533 1.02508 1.21201 0.95741 0.91678 0.97113 0.94585 0.93715 0.92181 0.97168 0.97574 0.92106 0.91511 0.93295 0.93037 0.92405 0.92560 0.90515 0.94336 0.91616 0.91289 0.91898 0.96169 0.97132 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.75 37.16 0.33 -2.24 16 2 C -0.07 -1.52 1.90 -90.62 -0.17 -1.69 16 3 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.01 0.38 3.55 -27.88 -0.10 0.28 16 5 C -0.60 -17.00 8.44 -34.44 -0.29 -17.29 16 6 H 0.05 1.34 6.98 -52.49 -0.37 0.98 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.48 13.65 55.43 0.76 -27.73 16 9 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.08 -1.35 1.49 -90.99 -0.14 -1.49 16 14 H 0.07 1.40 7.12 -51.93 -0.37 1.03 16 15 C -0.12 -1.80 4.74 -27.24 -0.13 -1.93 16 16 C -0.12 -1.45 5.92 -25.69 -0.15 -1.61 16 17 C -0.12 -1.47 5.41 -27.41 -0.15 -1.62 16 18 C 0.07 0.85 5.37 -4.52 -0.02 0.82 16 19 N -0.56 -8.56 4.19 -248.33 -1.04 -9.60 16 20 C 0.03 0.42 9.46 60.07 0.57 0.99 16 21 C 0.07 1.26 4.25 -6.74 -0.03 1.23 16 22 H 0.04 0.59 5.98 -51.93 -0.31 0.28 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.25 6.98 -51.93 -0.36 0.89 16 25 H 0.01 0.28 5.73 -51.93 -0.30 -0.02 16 26 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 27 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 28 H 0.07 0.99 5.52 -51.93 -0.29 0.71 16 29 H 0.05 0.72 6.58 -51.93 -0.34 0.38 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.09 7.27 -51.93 -0.38 0.71 16 34 H 0.04 0.51 6.66 -51.93 -0.35 0.16 16 35 H 0.07 0.74 7.62 -51.93 -0.40 0.34 16 36 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 37 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 38 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.01 0.19 7.55 -51.93 -0.39 -0.20 16 40 H 0.09 1.75 5.36 -51.93 -0.28 1.47 16 LS Contribution 293.11 15.07 4.42 4.42 Total: -1.00 -30.19 293.11 -8.33 -38.51 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.99 Total: -1.99 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -0.38 Total: -24.28 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.28 Total: -37.32 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.19 -8.33 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.368 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds