Wall clock time and date at job start Mon Mar 30 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.53003 * 109.46824 * 120.00125 * 2 1 3 5 5 C 1.50707 * 109.47013 * 296.03689 * 4 2 1 6 6 H 1.07998 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99996 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00059 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47370 * 59.99553 * 9 7 5 12 12 H 1.48499 * 109.46921 * 300.00106 * 9 7 5 13 13 C 1.52999 * 109.47446 * 240.00120 * 2 1 3 14 14 H 1.09004 * 109.53949 * 301.66282 * 13 2 1 15 15 C 1.50747 * 109.54410 * 61.92668 * 13 2 1 16 16 C 1.54178 * 112.61535 * 212.87701 * 15 13 2 17 17 C 1.53815 * 111.96657 * 318.48260 * 16 15 13 18 18 C 1.50809 * 111.61751 * 319.04320 * 17 16 15 19 19 N 1.47634 * 108.03529 * 95.07208 * 18 17 16 20 20 C 1.46904 * 111.00125 * 150.30690 * 19 18 17 21 21 C 1.39775 * 114.76937 * 277.16797 * 19 18 17 22 22 H 1.09001 * 109.46684 * 63.45190 * 1 2 3 23 23 H 1.08997 * 109.46931 * 183.44419 * 1 2 3 24 24 H 1.08990 * 109.47125 * 303.44767 * 1 2 3 25 25 H 1.08996 * 109.47172 * 176.04400 * 4 2 1 26 26 H 1.08997 * 109.47431 * 56.03733 * 4 2 1 27 27 H 0.96995 * 119.99788 * 359.97438 * 8 7 5 28 28 H 1.09000 * 108.85591 * 333.68194 * 15 13 2 29 29 H 1.08998 * 108.85452 * 92.06946 * 15 13 2 30 30 H 1.08995 * 108.98372 * 197.84331 * 16 15 13 31 31 H 1.08999 * 108.98312 * 79.12162 * 16 15 13 32 32 H 1.09003 * 109.04930 * 198.48965 * 17 16 15 33 33 H 1.08996 * 109.05051 * 79.59757 * 17 16 15 34 34 H 1.08994 * 109.75404 * 335.43813 * 18 17 16 35 35 H 1.09001 * 109.75043 * 214.70035 * 18 17 16 36 36 H 1.08994 * 109.47208 * 188.90802 * 20 19 18 37 37 H 1.08995 * 109.47006 * 308.90820 * 20 19 18 38 38 H 1.09002 * 109.46872 * 68.91038 * 20 19 18 39 39 H 1.09002 * 109.02349 * 301.69261 * 21 19 18 40 40 H 1.08995 * 109.02733 * 182.85967 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6193 0.0436 2.4778 6 1 1.0454 0.9529 2.3775 7 6 1.9664 -0.4181 3.7298 8 7 2.6649 -1.5257 3.8519 9 14 1.4444 0.5295 5.2525 10 1 1.9395 -0.1705 6.4650 11 1 -0.0374 0.6140 5.2993 12 1 2.0169 1.8989 5.2037 13 6 2.0401 -0.7212 -1.2492 14 1 1.6533 -1.7402 -1.2654 15 6 1.5779 0.0152 -2.4807 16 6 1.3064 -0.9288 -3.6691 17 6 2.3795 -2.0241 -3.7906 18 6 3.7620 -1.4781 -3.5359 19 7 4.0912 -1.7117 -2.1158 20 6 5.5386 -1.8832 -1.9322 21 6 3.5841 -0.7550 -1.2321 22 1 -0.3633 0.4593 -0.9193 23 1 -0.3633 -1.0258 0.0617 24 1 -0.3633 0.5664 0.8574 25 1 3.1276 -0.7831 1.2146 26 1 1.6198 -1.7264 1.2855 27 1 2.9356 -2.0180 3.0612 28 1 0.6618 0.5564 -2.2445 29 1 2.3447 0.7339 -2.7699 30 1 1.2901 -0.3449 -4.5892 31 1 0.3330 -1.3998 -3.5325 32 1 2.3435 -2.4476 -4.7944 33 1 2.1686 -2.8108 -3.0663 34 1 3.7806 -0.4090 -3.7472 35 1 4.4838 -1.9922 -4.1706 36 1 5.7393 -2.2089 -0.9117 37 1 5.9073 -2.6330 -2.6321 38 1 6.0431 -0.9347 -2.1167 39 1 3.9640 0.2268 -1.5149 40 1 3.9231 -0.9884 -0.2228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:02 Heat of formation + Delta-G solvation = -40.988765 kcal Electronic energy + Delta-G solvation = -16633.117110 eV Core-core repulsion = 14252.915070 eV Total energy + Delta-G solvation = -2380.202040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80768 -37.45495 -35.47707 -34.42884 -31.47496 -29.11657 -28.35185 -26.04746 -25.91445 -24.41297 -22.06932 -21.07557 -20.09129 -18.80750 -17.09554 -16.55570 -16.09210 -15.65651 -15.60997 -15.33162 -15.05878 -14.64489 -14.12054 -13.71830 -13.52987 -13.20405 -13.15292 -12.96915 -12.67372 -12.46092 -12.41524 -12.28068 -11.96303 -11.76519 -11.56811 -11.50419 -11.35689 -11.06830 -10.81500 -10.47557 -10.44227 -9.15906 -8.63749 -6.32319 1.51180 1.60068 1.78928 2.58230 3.00259 3.19944 3.74662 3.85271 3.98743 4.14214 4.18146 4.29129 4.40948 4.43333 4.48548 4.55928 4.60816 4.68703 4.75690 4.78757 4.92766 4.95038 4.96259 5.00610 5.08860 5.16176 5.19156 5.32531 5.36917 5.38025 5.42897 5.54065 5.62303 5.74318 6.08857 6.22368 6.24715 6.44781 6.64604 7.48698 8.76441 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035281 B = 0.007097 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.432710 B = 3944.122328 C = 4517.508420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 H 0.047 0.953 4 C 0.021 3.979 5 C -0.607 4.607 6 H 0.051 0.949 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.115 2.885 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.270 1.270 13 C -0.067 4.067 14 H 0.060 0.940 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.117 4.117 18 C 0.065 3.935 19 N -0.572 5.572 20 C 0.031 3.969 21 C 0.083 3.917 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.042 0.958 25 H -0.009 1.009 26 H -0.022 1.022 27 H 0.253 0.747 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.010 0.990 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 1.877 -16.551 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.016 4.016 5 C -0.645 4.645 6 H 0.069 0.931 7 C -0.240 4.240 8 N -0.580 5.580 9 Si 0.936 3.064 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.195 1.195 13 C -0.086 4.086 14 H 0.078 0.922 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.061 4.061 19 N -0.297 5.297 20 C -0.116 4.116 21 C -0.046 4.046 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.010 0.990 26 H -0.004 1.004 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.066 1.491 -14.810 14.885 hybrid contribution 0.555 0.451 -1.346 1.525 sum 0.621 1.942 -16.157 16.285 Atomic orbital electron populations 1.21691 0.94854 1.00715 1.00991 1.20945 0.96159 0.98016 0.93582 0.93414 1.19229 0.94152 0.94200 0.94043 1.22511 1.37241 1.11165 0.93594 0.93100 1.27387 0.94272 0.97136 1.05195 1.70910 1.37412 1.16919 1.32724 0.82972 0.76861 0.74637 0.71917 1.21044 1.19418 1.19492 1.20932 0.93729 0.99388 0.94511 0.92183 1.21556 1.01437 0.98314 0.94090 1.21885 0.98761 0.96802 0.97461 1.21405 0.93733 0.98346 1.01979 1.21911 0.97986 0.99550 0.86627 1.58821 1.13877 1.50131 1.06825 1.22366 0.86355 1.00590 1.02278 1.20948 0.95711 0.92142 0.95832 0.90901 0.94360 0.93918 0.99050 1.00377 0.93760 0.91152 0.92911 0.90618 0.92091 0.89822 0.92726 0.94109 0.89307 0.93057 0.89317 0.95531 0.97231 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.75 71.98 0.63 -4.18 16 2 C -0.07 -2.87 1.90 -10.79 -0.02 -2.89 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.02 1.10 3.55 29.85 0.11 1.21 16 5 C -0.61 -35.48 8.44 25.60 0.22 -35.27 16 6 H 0.05 2.88 6.98 -2.91 -0.02 2.86 16 7 C -0.04 -2.58 5.46 84.65 0.46 -2.12 16 8 N -0.94 -60.46 13.65 21.45 0.29 -60.17 16 9 Si 1.11 51.73 29.90 68.60 2.05 53.78 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 C -0.07 -2.35 1.49 -11.04 -0.02 -2.37 16 14 H 0.06 2.30 7.12 -2.38 -0.02 2.28 16 15 C -0.12 -3.22 4.74 30.26 0.14 -3.07 16 16 C -0.11 -2.46 5.92 31.27 0.18 -2.28 16 17 C -0.12 -2.59 5.41 30.16 0.16 -2.43 16 18 C 0.07 1.53 5.37 85.45 0.46 1.98 16 19 N -0.57 -17.32 4.19 -939.57 -3.94 -21.26 16 20 C 0.03 0.83 9.46 127.69 1.21 2.04 16 21 C 0.08 2.99 4.25 88.08 0.37 3.36 16 22 H 0.07 2.24 5.98 -2.39 -0.01 2.23 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.04 1.76 6.98 -2.39 -0.02 1.74 16 25 H -0.01 -0.49 5.73 -2.39 -0.01 -0.50 16 26 H -0.02 -1.30 8.01 -2.39 -0.02 -1.32 16 27 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 28 H 0.07 1.89 5.52 -2.39 -0.01 1.87 16 29 H 0.05 1.43 6.58 -2.39 -0.02 1.41 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.47 7.27 -2.39 -0.02 1.46 16 34 H 0.04 0.95 6.66 -2.39 -0.02 0.94 16 35 H 0.09 1.67 7.62 -2.39 -0.02 1.66 16 36 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 37 H 0.09 1.85 7.83 -2.39 -0.02 1.83 16 38 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.01 0.34 7.55 -2.39 -0.02 0.33 16 40 H 0.05 2.07 5.36 -2.39 -0.01 2.05 16 Total: -1.00 -66.90 293.11 3.40 -63.50 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.08 Total: 10.17 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 3.91 Total: -46.03 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.64 Total: -81.43 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.05 Total: 53.78 kcal Total: -66.90 3.40 -63.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.514 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds