Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.52998 * 109.46869 * 240.00248 * 2 1 3 5 5 C 1.50702 * 109.47294 * 65.47552 * 4 2 1 6 6 H 1.07997 * 119.99686 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00223 * 180.27343 * 5 4 2 8 8 N 1.31522 * 119.99502 * 359.71893 * 7 5 4 9 9 Si 1.86798 * 120.00291 * 179.72539 * 7 5 4 10 10 H 1.48499 * 109.46613 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47312 * 119.99853 * 9 7 5 12 12 H 1.48499 * 109.46712 * 240.00059 * 9 7 5 13 13 C 1.52997 * 109.46981 * 120.00679 * 2 1 3 14 14 H 1.08996 * 109.63524 * 63.82479 * 13 2 1 15 15 C 1.54320 * 109.62857 * 303.43070 * 13 2 1 16 16 C 1.45887 * 112.17811 * 161.77673 * 15 13 2 17 17 C 1.54302 * 112.19074 * 61.12455 * 16 15 13 18 18 C 1.50454 * 108.49036 * 281.44962 * 17 16 15 19 19 N 1.47998 * 112.82275 * 93.73408 * 18 17 16 20 20 C 1.46898 * 111.00120 * 191.34533 * 19 18 17 21 21 C 1.47996 * 114.63004 * 318.09516 * 19 18 17 22 22 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47004 * 299.99451 * 1 2 3 24 24 H 1.09005 * 109.46738 * 59.99626 * 1 2 3 25 25 H 1.08997 * 109.47568 * 305.46895 * 4 2 1 26 26 H 1.09006 * 109.47080 * 185.47274 * 4 2 1 27 27 H 0.97001 * 119.99163 * 179.97438 * 8 7 5 28 28 H 1.09001 * 108.94448 * 282.47480 * 15 13 2 29 29 H 1.08998 * 108.93896 * 41.17831 * 15 13 2 30 30 H 1.08997 * 108.93476 * 181.81823 * 16 15 13 31 31 H 1.08998 * 108.93666 * 300.42319 * 16 15 13 32 32 H 1.09006 * 109.63670 * 41.14742 * 17 16 15 33 33 H 1.08997 * 109.63658 * 161.54855 * 17 16 15 34 34 H 1.09004 * 108.81120 * 214.59517 * 18 17 16 35 35 H 1.09000 * 108.81270 * 332.98133 * 18 17 16 36 36 H 1.08999 * 109.47063 * 63.95241 * 20 19 18 37 37 H 1.08993 * 109.47466 * 183.95771 * 20 19 18 38 38 H 1.09001 * 109.46992 * 303.95516 * 20 19 18 39 39 H 1.09002 * 108.80873 * 197.22349 * 21 19 18 40 40 H 1.08996 * 108.81688 * 78.94995 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6514 0.0632 -2.4760 6 1 1.0959 0.9838 -2.3747 7 6 1.9997 -0.3976 -3.7279 8 7 2.6759 -1.5189 -3.8512 9 14 1.5114 0.5707 -5.2489 10 1 0.7617 1.7863 -4.8421 11 1 2.7318 0.9680 -5.9958 12 1 0.6518 -0.2728 -6.1177 13 6 2.0400 -0.7214 1.2491 14 1 1.7351 -1.7674 1.2181 15 6 1.4578 -0.0488 2.5102 16 6 1.5444 -0.9110 3.6839 17 6 3.0029 -1.2707 4.0364 18 6 3.4656 -2.3562 3.1030 19 7 4.1658 -1.8282 1.9108 20 6 4.3609 -2.8813 0.9055 21 6 3.5405 -0.6295 1.3088 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.5989 -1.7167 -1.2997 26 1 3.1256 -0.8069 -1.2017 27 1 2.9206 -1.8432 -4.7321 28 1 2.0076 0.8718 2.7061 29 1 0.4112 0.1961 2.3292 30 1 1.0912 -0.3992 4.5328 31 1 0.9905 -1.8294 3.4897 32 1 3.6360 -0.3913 3.9179 33 1 3.0545 -1.6229 5.0666 34 1 4.1417 -3.0193 3.6428 35 1 2.5992 -2.9301 2.7744 36 1 3.3909 -3.2240 0.5454 37 1 4.9389 -2.4844 0.0710 38 1 4.8979 -3.7170 1.3543 39 1 3.9254 -0.5031 0.2968 40 1 3.8159 0.2446 1.8989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -22.242880 kcal Electronic energy + Delta-G solvation = -16741.383669 eV Core-core repulsion = 14361.994511 eV Total energy + Delta-G solvation = -2379.389157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42679 -35.40832 -34.08003 -32.44238 -30.07518 -27.79111 -27.01079 -24.45418 -24.28812 -22.71629 -20.24556 -19.77499 -18.68644 -16.42211 -15.67475 -15.29220 -14.55265 -14.44026 -13.95237 -13.61470 -13.22252 -13.01052 -12.62510 -12.28836 -11.85335 -11.80807 -11.40472 -11.35601 -11.06694 -10.89659 -10.87733 -10.74907 -10.49184 -10.40482 -10.29727 -10.16024 -9.83976 -9.59541 -8.95560 -8.86956 -8.30668 -7.76277 -5.97384 -3.98180 3.31729 3.39559 3.43299 4.26651 4.47959 4.92286 4.96852 5.15892 5.38049 5.42812 5.50826 5.63211 5.73837 5.77517 5.88215 5.95524 6.00969 6.07559 6.17119 6.18162 6.27859 6.33269 6.36338 6.40333 6.46399 6.54239 6.55938 6.69814 6.75162 7.08711 7.12827 7.23010 7.46829 7.55155 7.72795 7.87085 8.03469 8.47467 9.08402 9.65175 11.13851 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.007353 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.488582 B = 3807.020202 C = 4356.914616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.104 4.104 14 H 0.062 0.938 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.120 4.120 18 C 0.063 3.937 19 N -0.555 5.555 20 C 0.030 3.970 21 C 0.058 3.942 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.011 0.989 26 H 0.019 0.981 27 H 0.258 0.742 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -0.218 13.444 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.008 4.008 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.124 4.124 14 H 0.080 0.920 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.065 4.065 19 N -0.279 5.279 20 C -0.118 4.118 21 C -0.069 4.069 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.352 -0.193 13.480 13.486 hybrid contribution -1.071 0.111 -1.257 1.655 sum -0.720 -0.082 12.223 12.245 Atomic orbital electron populations 1.21796 0.96639 1.00580 1.00091 1.21184 0.94885 0.99159 0.94619 0.92554 1.19186 0.96126 0.95198 0.90323 1.21307 1.34891 1.07868 0.91123 0.92651 1.25012 0.95368 0.95066 0.99038 1.69977 1.39369 1.20979 1.23194 0.86605 0.78252 0.80166 0.83405 1.19803 1.21077 1.21147 1.21503 0.96144 0.99860 0.94929 0.91973 1.20765 1.01826 0.98715 0.94641 1.20598 0.96413 1.00217 0.98166 1.21414 0.96492 0.99680 0.98160 1.21734 0.96626 0.96589 0.91533 1.61939 1.51296 1.07372 1.07296 1.22301 1.00387 0.94140 0.94984 1.22095 0.92622 0.91795 1.00377 0.93996 0.94586 0.92180 0.97037 0.96259 0.93196 0.92577 0.91608 0.92783 0.92621 0.90843 0.91784 0.91916 0.95085 0.95291 0.90999 0.92508 0.89592 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.64 37.16 0.32 -2.22 16 2 C -0.08 -1.61 1.86 -90.62 -0.17 -1.78 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.03 0.72 4.31 -27.88 -0.12 0.60 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.51 7.09 -52.49 -0.37 1.14 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.10 -1.79 1.42 -91.20 -0.13 -1.92 16 14 H 0.06 1.16 6.69 -51.93 -0.35 0.81 16 15 C -0.12 -1.75 4.63 -29.41 -0.14 -1.89 16 16 C -0.12 -1.45 5.30 -29.42 -0.16 -1.61 16 17 C -0.12 -1.45 5.63 -27.32 -0.15 -1.61 16 18 C 0.06 0.86 5.00 -4.49 -0.02 0.83 16 19 N -0.55 -8.85 4.94 -244.20 -1.21 -10.05 16 20 C 0.03 0.49 9.41 60.06 0.57 1.05 16 21 C 0.06 0.99 4.59 -4.49 -0.02 0.97 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.58 6.00 -51.93 -0.31 0.27 16 24 H 0.06 1.22 6.98 -51.93 -0.36 0.86 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.02 0.51 6.09 -51.93 -0.32 0.20 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 29 H 0.07 0.94 5.52 -51.93 -0.29 0.66 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.71 7.52 -51.93 -0.39 0.32 16 32 H 0.07 0.95 7.08 -51.93 -0.37 0.58 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.45 6.48 -51.93 -0.34 0.11 16 36 H 0.03 0.51 7.79 -51.93 -0.40 0.10 16 37 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.70 5.26 -51.93 -0.27 1.43 16 40 H 0.06 1.02 6.59 -51.93 -0.34 0.67 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -28.84 293.57 -8.48 -37.32 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.01 Total: -1.70 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -0.41 Total: -20.65 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.47 Total: -36.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.84 -8.48 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.075 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds