Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47018 * 2 1 4 4 C 1.52998 * 109.46869 * 240.00248 * 2 1 3 5 5 C 1.50702 * 109.47294 * 65.47552 * 4 2 1 6 6 H 1.07997 * 119.99686 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00223 * 180.27343 * 5 4 2 8 8 N 1.31522 * 119.99502 * 359.71893 * 7 5 4 9 9 Si 1.86798 * 120.00291 * 179.72539 * 7 5 4 10 10 H 1.48499 * 109.46613 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47312 * 119.99853 * 9 7 5 12 12 H 1.48499 * 109.46712 * 240.00059 * 9 7 5 13 13 C 1.52997 * 109.46981 * 120.00679 * 2 1 3 14 14 H 1.08996 * 109.63524 * 63.82479 * 13 2 1 15 15 C 1.54320 * 109.62857 * 303.43070 * 13 2 1 16 16 C 1.45887 * 112.17811 * 161.77673 * 15 13 2 17 17 C 1.54302 * 112.19074 * 61.12455 * 16 15 13 18 18 C 1.50454 * 108.49036 * 281.44962 * 17 16 15 19 19 N 1.47998 * 112.82275 * 93.73408 * 18 17 16 20 20 C 1.46898 * 111.00120 * 191.34533 * 19 18 17 21 21 C 1.47996 * 114.63004 * 318.09516 * 19 18 17 22 22 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47004 * 299.99451 * 1 2 3 24 24 H 1.09005 * 109.46738 * 59.99626 * 1 2 3 25 25 H 1.08997 * 109.47568 * 305.46895 * 4 2 1 26 26 H 1.09006 * 109.47080 * 185.47274 * 4 2 1 27 27 H 0.97001 * 119.99163 * 179.97438 * 8 7 5 28 28 H 1.09001 * 108.94448 * 282.47480 * 15 13 2 29 29 H 1.08998 * 108.93896 * 41.17831 * 15 13 2 30 30 H 1.08997 * 108.93476 * 181.81823 * 16 15 13 31 31 H 1.08998 * 108.93666 * 300.42319 * 16 15 13 32 32 H 1.09006 * 109.63670 * 41.14742 * 17 16 15 33 33 H 1.08997 * 109.63658 * 161.54855 * 17 16 15 34 34 H 1.09004 * 108.81120 * 214.59517 * 18 17 16 35 35 H 1.09000 * 108.81270 * 332.98133 * 18 17 16 36 36 H 1.08999 * 109.47063 * 63.95241 * 20 19 18 37 37 H 1.08993 * 109.47466 * 183.95771 * 20 19 18 38 38 H 1.09001 * 109.46992 * 303.95516 * 20 19 18 39 39 H 1.09002 * 108.80873 * 197.22349 * 21 19 18 40 40 H 1.08996 * 108.81688 * 78.94995 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6514 0.0632 -2.4760 6 1 1.0959 0.9838 -2.3747 7 6 1.9997 -0.3976 -3.7279 8 7 2.6759 -1.5189 -3.8512 9 14 1.5114 0.5707 -5.2489 10 1 0.7617 1.7863 -4.8421 11 1 2.7318 0.9680 -5.9958 12 1 0.6518 -0.2728 -6.1177 13 6 2.0400 -0.7214 1.2491 14 1 1.7351 -1.7674 1.2181 15 6 1.4578 -0.0488 2.5102 16 6 1.5444 -0.9110 3.6839 17 6 3.0029 -1.2707 4.0364 18 6 3.4656 -2.3562 3.1030 19 7 4.1658 -1.8282 1.9108 20 6 4.3609 -2.8813 0.9055 21 6 3.5405 -0.6295 1.3088 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.5989 -1.7167 -1.2997 26 1 3.1256 -0.8069 -1.2017 27 1 2.9206 -1.8432 -4.7321 28 1 2.0076 0.8718 2.7061 29 1 0.4112 0.1961 2.3292 30 1 1.0912 -0.3992 4.5328 31 1 0.9905 -1.8294 3.4897 32 1 3.6360 -0.3913 3.9179 33 1 3.0545 -1.6229 5.0666 34 1 4.1417 -3.0193 3.6428 35 1 2.5992 -2.9301 2.7744 36 1 3.3909 -3.2240 0.5454 37 1 4.9389 -2.4844 0.0710 38 1 4.8979 -3.7170 1.3543 39 1 3.9254 -0.5031 0.2968 40 1 3.8159 0.2446 1.8989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -39.365282 kcal Electronic energy + Delta-G solvation = -16742.126152 eV Core-core repulsion = 14361.994511 eV Total energy + Delta-G solvation = -2380.131640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72985 -36.99346 -35.36014 -34.39468 -31.56501 -29.19289 -28.80004 -26.07494 -25.54696 -24.41487 -21.57497 -21.12398 -20.16267 -18.52311 -16.95924 -16.64382 -16.47793 -15.73059 -15.31767 -15.08111 -14.64816 -14.54145 -14.01227 -13.88734 -13.41992 -13.20250 -13.13304 -12.83020 -12.67722 -12.61740 -12.40904 -12.26568 -12.02332 -11.78691 -11.67501 -11.47816 -11.39098 -11.22008 -10.87981 -10.60219 -10.44273 -9.08780 -8.17692 -6.26624 1.37866 1.38469 1.51146 2.40892 3.00738 3.15344 3.74913 3.85603 4.00789 4.19867 4.25451 4.36954 4.45938 4.49655 4.57411 4.62147 4.71440 4.78947 4.85695 4.89990 5.00585 5.02612 5.04685 5.08590 5.20614 5.25381 5.31297 5.37150 5.43142 5.46182 5.52311 5.53249 5.65733 5.86716 5.90282 6.14423 6.27862 6.31829 6.90033 7.41447 8.94002 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.007353 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.488582 B = 3807.020202 C = 4356.914616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.039 3.961 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.281 1.281 13 C -0.095 4.095 14 H 0.044 0.956 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.059 3.941 19 N -0.556 5.556 20 C 0.036 3.964 21 C 0.064 3.936 22 H 0.034 0.966 23 H 0.072 0.928 24 H 0.042 0.958 25 H -0.023 1.023 26 H -0.005 1.005 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.022 0.978 36 H 0.005 0.995 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 0.861 15.225 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 H 0.073 0.927 4 C 0.002 3.998 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.574 5.574 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.115 4.115 14 H 0.062 0.938 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.067 4.067 19 N -0.281 5.281 20 C -0.113 4.113 21 C -0.064 4.064 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.061 0.939 25 H -0.005 1.005 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.331 0.893 15.277 15.307 hybrid contribution -0.825 -0.269 -1.801 2.000 sum -1.157 0.624 13.476 13.540 Atomic orbital electron populations 1.21730 0.95321 1.00426 1.01005 1.21050 0.95939 0.98531 0.93763 0.92691 1.19020 0.94469 0.93765 0.92529 1.21720 1.34667 1.08140 0.92291 0.92270 1.25930 0.95310 0.96080 1.02552 1.70117 1.40551 1.22683 1.24062 0.85496 0.78075 0.78939 0.79154 1.18588 1.20519 1.20642 1.21357 0.96240 0.98667 0.95235 0.93791 1.20708 1.01766 0.99108 0.93557 1.20584 0.96852 0.99883 0.98027 1.21423 0.95961 0.98821 0.99078 1.21897 0.96554 0.97538 0.90757 1.62003 1.51582 1.06852 1.07630 1.22233 0.99110 0.95021 0.94931 1.21971 0.92513 0.93111 0.98768 0.94671 0.90950 0.93931 1.00493 0.98636 0.93054 0.91667 0.91175 0.90190 0.93046 0.91247 0.89025 0.90169 0.96009 0.97589 0.93071 0.89840 0.93202 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.64 71.98 0.62 -4.15 16 2 C -0.07 -3.03 1.86 -10.79 -0.02 -3.05 16 3 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.04 2.07 4.31 29.85 0.13 2.19 16 5 C -0.53 -30.30 8.41 25.60 0.22 -30.08 16 6 H 0.06 3.26 7.09 -2.91 -0.02 3.24 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 8 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C -0.10 -3.25 1.42 -11.17 -0.02 -3.27 16 14 H 0.04 1.67 6.69 -2.39 -0.02 1.65 16 15 C -0.11 -2.98 4.63 28.86 0.13 -2.85 16 16 C -0.12 -2.50 5.30 28.85 0.15 -2.35 16 17 C -0.12 -2.41 5.63 30.21 0.17 -2.24 16 18 C 0.06 1.51 5.00 85.27 0.43 1.94 16 19 N -0.56 -17.62 4.94 -926.52 -4.57 -22.19 16 20 C 0.04 1.20 9.41 127.69 1.20 2.40 16 21 C 0.06 2.21 4.59 85.27 0.39 2.60 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.07 2.17 6.00 -2.39 -0.01 2.15 16 24 H 0.04 1.71 6.98 -2.38 -0.02 1.70 16 25 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 26 H 0.00 -0.26 6.09 -2.38 -0.01 -0.27 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.06 1.61 7.52 -2.39 -0.02 1.59 16 29 H 0.07 1.78 5.52 -2.39 -0.01 1.76 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.17 7.52 -2.39 -0.02 1.16 16 32 H 0.07 1.55 7.08 -2.38 -0.02 1.53 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.02 0.60 6.48 -2.39 -0.02 0.59 16 36 H 0.01 0.21 7.79 -2.39 -0.02 0.19 16 37 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.08 5.26 -2.39 -0.01 2.07 16 40 H 0.08 2.42 6.59 -2.39 -0.02 2.41 16 Total: -1.00 -63.82 293.57 2.59 -61.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.98 Total: 9.73 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.87 Total: -38.48 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -4.29 Total: -79.50 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.82 2.59 -61.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.862 kcal (2) G-P(sol) polarization free energy of solvation -63.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds