Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46555 * 2 1 4 4 C 1.52996 * 109.47040 * 240.00875 * 2 1 3 5 5 C 1.50698 * 109.47598 * 65.47524 * 4 2 1 6 6 H 1.08001 * 119.99657 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00055 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99965 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00112 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47010 * 89.99745 * 9 7 5 11 11 H 1.48496 * 109.47284 * 210.00177 * 9 7 5 12 12 H 1.48500 * 109.47201 * 330.00264 * 9 7 5 13 13 C 1.52992 * 109.47296 * 120.00275 * 2 1 3 14 14 H 1.09000 * 109.57464 * 64.47511 * 13 2 1 15 15 C 1.50466 * 109.67693 * 184.78786 * 13 2 1 16 16 C 1.54287 * 113.03693 * 212.02627 * 15 13 2 17 17 C 1.54068 * 112.28704 * 318.29595 * 16 15 13 18 18 N 1.44266 * 111.98126 * 318.91725 * 17 16 15 19 19 C 1.46896 * 111.00385 * 219.31547 * 18 17 16 20 20 C 1.47799 * 109.45733 * 96.44019 * 18 17 16 21 21 C 1.45863 * 112.92579 * 276.73340 * 20 18 17 22 22 H 1.09002 * 109.47408 * 60.00065 * 1 2 3 23 23 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47167 * 299.99347 * 1 2 3 25 25 H 1.08998 * 109.46798 * 185.47927 * 4 2 1 26 26 H 1.09007 * 109.46954 * 305.47112 * 4 2 1 27 27 H 0.96998 * 119.99809 * 179.97438 * 8 7 5 28 28 H 1.09000 * 108.76594 * 332.94456 * 15 13 2 29 29 H 1.08998 * 108.76945 * 91.10516 * 15 13 2 30 30 H 1.09008 * 108.91856 * 197.57392 * 16 15 13 31 31 H 1.08993 * 108.84749 * 78.97290 * 16 15 13 32 32 H 1.09001 * 108.97632 * 198.26984 * 17 16 15 33 33 H 1.09001 * 108.91110 * 79.52332 * 17 16 15 34 34 H 1.09000 * 109.46681 * 298.02612 * 19 18 17 35 35 H 1.09005 * 109.47298 * 58.02351 * 19 18 17 36 36 H 1.08997 * 109.47018 * 178.02266 * 19 18 17 37 37 H 1.08995 * 108.79161 * 155.84078 * 20 18 17 38 38 H 1.09003 * 108.78848 * 37.62194 * 20 18 17 39 39 H 1.09006 * 109.05595 * 300.77986 * 21 20 18 40 40 H 1.08994 * 109.05658 * 181.86539 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2493 5 6 1.6515 0.0634 -2.4760 6 1 1.0966 0.9844 -2.3746 7 6 2.0043 -0.3947 -3.7276 8 7 1.6656 0.2901 -4.7981 9 14 2.9646 -1.9874 -3.9029 10 1 2.0181 -3.1250 -4.0259 11 1 3.8179 -1.9200 -5.1163 12 1 3.8210 -2.1834 -2.7057 13 6 2.0400 -0.7213 1.2491 14 1 1.7446 -1.7698 1.2116 15 6 3.5400 -0.6224 1.3143 16 6 4.1982 -1.8529 1.9723 17 6 3.4231 -2.3369 3.2127 18 7 2.9614 -1.2370 4.0240 19 6 3.0950 -1.5452 5.4541 20 6 1.5587 -0.9249 3.6782 21 6 1.4406 -0.0594 2.5101 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 3.1255 -0.8068 -1.2016 26 1 1.5988 -1.7166 -1.2998 27 1 1.9142 -0.0320 -5.6786 28 1 3.9288 -0.5161 0.3016 29 1 3.8084 0.2664 1.8855 30 1 5.2144 -1.5936 2.2695 31 1 4.2394 -2.6622 1.2433 32 1 4.0753 -2.9711 3.8131 33 1 2.5633 -2.9219 2.8860 34 1 2.4745 -2.4071 5.6994 35 1 4.1369 -1.7711 5.6813 36 1 2.7728 -0.6862 6.0425 37 1 1.0886 -0.4323 4.5292 38 1 1.0304 -1.8574 3.4792 39 1 1.9661 0.8755 2.7052 40 1 0.3872 0.1564 2.3321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = -16.436656 kcal Electronic energy + Delta-G solvation = -16541.369394 eV Core-core repulsion = 14162.232013 eV Total energy + Delta-G solvation = -2379.137381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40883 -36.27075 -32.95837 -32.43980 -31.25741 -27.67673 -27.54105 -24.79928 -24.06437 -22.66712 -20.28074 -19.66809 -18.73094 -16.78984 -15.68225 -15.46482 -14.84911 -14.33477 -13.99074 -13.55828 -13.42487 -13.14978 -12.95409 -12.61051 -12.24197 -11.86269 -11.57382 -11.51848 -11.26720 -10.95816 -10.85212 -10.67628 -10.59944 -10.24987 -10.10219 -9.92196 -9.60854 -9.53915 -9.02183 -8.93144 -8.45524 -8.29303 -5.97265 -3.93144 3.34647 3.42092 3.46427 3.94861 4.51377 4.90642 4.96905 5.15237 5.23062 5.35080 5.39392 5.44970 5.51160 5.57673 5.69453 5.72178 5.76506 5.91620 5.96652 6.02714 6.18469 6.27932 6.35053 6.39558 6.52342 6.64563 6.69052 6.73102 6.80635 7.01458 7.09324 7.14236 7.18520 7.19955 7.45716 7.59988 7.89781 8.63422 9.09166 9.66476 11.16415 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.007047 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.523236 B = 3972.273977 C = 4460.665482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.265 1.265 13 C -0.076 4.076 14 H 0.058 0.942 15 C -0.110 4.110 16 C -0.108 4.108 17 C 0.055 3.945 18 N -0.534 5.534 19 C 0.027 3.973 20 C 0.061 3.939 21 C -0.120 4.120 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.019 0.981 26 H 0.007 0.993 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -4.605 18.082 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.547 5.547 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.190 1.190 13 C -0.095 4.095 14 H 0.076 0.924 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.073 4.073 18 N -0.258 5.258 19 C -0.121 4.121 20 C -0.066 4.066 21 C -0.158 4.158 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.355 -4.190 17.797 18.435 hybrid contribution 0.014 -1.619 -0.092 1.622 sum 2.369 -5.808 17.705 18.784 Atomic orbital electron populations 1.21819 0.96386 1.00613 1.00542 1.21024 0.94966 0.99316 0.93742 0.92079 1.19687 0.96053 0.95581 0.93403 1.21197 1.35336 1.09126 0.89273 0.90962 1.25026 0.95700 0.96888 0.95989 1.69917 1.47536 1.39220 0.98002 0.86827 0.80652 0.84488 0.77634 1.20510 1.21565 1.18957 1.20987 0.94974 0.99240 0.94264 0.92379 1.21352 0.95279 0.97454 1.00706 1.21924 0.98683 0.98575 0.95487 1.21942 0.98836 0.91558 0.94998 1.61611 1.20687 1.39834 1.03656 1.22444 1.01189 0.99649 0.88836 1.21048 0.87757 0.99215 0.98591 1.20816 1.01583 0.99243 0.94139 0.91769 0.94017 0.94383 0.96266 0.97430 0.92923 0.91315 0.92247 0.92534 0.92413 0.92553 0.94214 0.96083 0.91629 0.91586 0.92181 0.94904 0.91669 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.61 37.16 0.32 -2.23 16 2 C -0.07 -1.42 1.87 -90.62 -0.17 -1.59 16 3 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 4 C -0.01 -0.24 3.38 -27.89 -0.09 -0.34 16 5 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 6 H 0.07 2.21 7.33 -52.49 -0.38 1.82 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 9 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 13 C -0.08 -1.25 1.44 -91.10 -0.13 -1.39 16 14 H 0.06 0.99 7.15 -51.93 -0.37 0.62 16 15 C -0.11 -1.79 4.86 -27.32 -0.13 -1.92 16 16 C -0.11 -1.52 6.14 -25.50 -0.16 -1.68 16 17 C 0.06 0.70 5.18 -4.67 -0.02 0.67 16 18 N -0.53 -6.62 4.48 -247.88 -1.11 -7.73 16 19 C 0.03 0.26 9.19 60.06 0.55 0.82 16 20 C 0.06 0.75 4.96 -6.71 -0.03 0.72 16 21 C -0.12 -1.68 4.82 -29.31 -0.14 -1.82 16 22 H 0.06 1.34 6.98 -51.93 -0.36 0.98 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.60 6.00 -51.93 -0.31 0.29 16 25 H 0.02 0.47 5.16 -51.93 -0.27 0.20 16 26 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.07 1.26 5.69 -51.93 -0.30 0.96 16 29 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.62 7.49 -51.93 -0.39 0.23 16 33 H 0.04 0.52 6.50 -51.93 -0.34 0.18 16 34 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.06 0.66 7.74 -51.93 -0.40 0.26 16 38 H 0.03 0.41 7.24 -51.93 -0.38 0.04 16 39 H 0.06 0.94 7.59 -51.93 -0.39 0.54 16 40 H 0.07 0.99 5.53 -51.93 -0.29 0.70 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -30.13 292.00 -8.09 -38.23 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.07 Total: -2.95 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.42 Total: -21.85 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.34 Total: -35.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.13 -8.09 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.793 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds