Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46555 * 2 1 4 4 C 1.52996 * 109.47040 * 240.00875 * 2 1 3 5 5 C 1.50698 * 109.47598 * 65.47524 * 4 2 1 6 6 H 1.08001 * 119.99657 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00055 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99965 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00112 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47010 * 89.99745 * 9 7 5 11 11 H 1.48496 * 109.47284 * 210.00177 * 9 7 5 12 12 H 1.48500 * 109.47201 * 330.00264 * 9 7 5 13 13 C 1.52992 * 109.47296 * 120.00275 * 2 1 3 14 14 H 1.09000 * 109.57464 * 64.47511 * 13 2 1 15 15 C 1.50466 * 109.67693 * 184.78786 * 13 2 1 16 16 C 1.54287 * 113.03693 * 212.02627 * 15 13 2 17 17 C 1.54068 * 112.28704 * 318.29595 * 16 15 13 18 18 N 1.44266 * 111.98126 * 318.91725 * 17 16 15 19 19 C 1.46896 * 111.00385 * 219.31547 * 18 17 16 20 20 C 1.47799 * 109.45733 * 96.44019 * 18 17 16 21 21 C 1.45863 * 112.92579 * 276.73340 * 20 18 17 22 22 H 1.09002 * 109.47408 * 60.00065 * 1 2 3 23 23 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47167 * 299.99347 * 1 2 3 25 25 H 1.08998 * 109.46798 * 185.47927 * 4 2 1 26 26 H 1.09007 * 109.46954 * 305.47112 * 4 2 1 27 27 H 0.96998 * 119.99809 * 179.97438 * 8 7 5 28 28 H 1.09000 * 108.76594 * 332.94456 * 15 13 2 29 29 H 1.08998 * 108.76945 * 91.10516 * 15 13 2 30 30 H 1.09008 * 108.91856 * 197.57392 * 16 15 13 31 31 H 1.08993 * 108.84749 * 78.97290 * 16 15 13 32 32 H 1.09001 * 108.97632 * 198.26984 * 17 16 15 33 33 H 1.09001 * 108.91110 * 79.52332 * 17 16 15 34 34 H 1.09000 * 109.46681 * 298.02612 * 19 18 17 35 35 H 1.09005 * 109.47298 * 58.02351 * 19 18 17 36 36 H 1.08997 * 109.47018 * 178.02266 * 19 18 17 37 37 H 1.08995 * 108.79161 * 155.84078 * 20 18 17 38 38 H 1.09003 * 108.78848 * 37.62194 * 20 18 17 39 39 H 1.09006 * 109.05595 * 300.77986 * 21 20 18 40 40 H 1.08994 * 109.05658 * 181.86539 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2493 5 6 1.6515 0.0634 -2.4760 6 1 1.0966 0.9844 -2.3746 7 6 2.0043 -0.3947 -3.7276 8 7 1.6656 0.2901 -4.7981 9 14 2.9646 -1.9874 -3.9029 10 1 2.0181 -3.1250 -4.0259 11 1 3.8179 -1.9200 -5.1163 12 1 3.8210 -2.1834 -2.7057 13 6 2.0400 -0.7213 1.2491 14 1 1.7446 -1.7698 1.2116 15 6 3.5400 -0.6224 1.3143 16 6 4.1982 -1.8529 1.9723 17 6 3.4231 -2.3369 3.2127 18 7 2.9614 -1.2370 4.0240 19 6 3.0950 -1.5452 5.4541 20 6 1.5587 -0.9249 3.6782 21 6 1.4406 -0.0594 2.5101 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 3.1255 -0.8068 -1.2016 26 1 1.5988 -1.7166 -1.2998 27 1 1.9142 -0.0320 -5.6786 28 1 3.9288 -0.5161 0.3016 29 1 3.8084 0.2664 1.8855 30 1 5.2144 -1.5936 2.2695 31 1 4.2394 -2.6622 1.2433 32 1 4.0753 -2.9711 3.8131 33 1 2.5633 -2.9219 2.8860 34 1 2.4745 -2.4071 5.6994 35 1 4.1369 -1.7711 5.6813 36 1 2.7728 -0.6862 6.0425 37 1 1.0886 -0.4323 4.5292 38 1 1.0304 -1.8574 3.4792 39 1 1.9661 0.8755 2.7052 40 1 0.3872 0.1564 2.3321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = -34.911392 kcal Electronic energy + Delta-G solvation = -16542.170519 eV Core-core repulsion = 14162.232013 eV Total energy + Delta-G solvation = -2379.938505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54181 -37.62192 -34.86939 -33.63545 -32.83447 -29.43507 -28.71404 -26.00456 -25.19834 -24.36149 -21.56780 -20.96518 -20.18099 -18.91943 -16.79133 -16.48904 -16.36119 -15.82742 -15.35380 -15.08823 -14.75520 -14.53309 -14.28448 -13.95561 -13.57165 -13.27426 -13.12134 -12.83814 -12.67763 -12.50733 -12.23345 -12.05165 -11.80471 -11.74684 -11.61465 -11.49646 -11.35615 -11.06732 -10.79821 -10.71244 -10.54482 -9.19017 -8.25674 -6.26778 1.34049 1.36087 1.48212 2.37556 3.06164 3.09735 3.79856 3.97305 4.05678 4.27640 4.34517 4.38400 4.41805 4.44423 4.54601 4.66255 4.72936 4.79680 4.86876 4.92300 4.96930 5.02934 5.06733 5.09871 5.20653 5.28071 5.31550 5.38829 5.41667 5.43960 5.50176 5.55874 5.73079 5.80340 5.87337 6.21637 6.31504 6.36470 6.80746 7.36476 8.91312 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039790 B = 0.007047 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.523236 B = 3972.273977 C = 4460.665482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 H 0.044 0.956 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.248 1.248 13 C -0.067 4.067 14 H 0.057 0.943 15 C -0.108 4.108 16 C -0.107 4.107 17 C 0.058 3.942 18 N -0.549 5.549 19 C 0.027 3.973 20 C 0.061 3.939 21 C -0.112 4.112 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.020 0.980 26 H 0.009 0.991 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.060 0.940 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -6.327 20.566 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.052 0.948 7 C -0.194 4.194 8 N -0.596 5.596 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.086 4.086 14 H 0.076 0.924 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.070 4.070 18 N -0.273 5.273 19 C -0.120 4.120 20 C -0.066 4.066 21 C -0.149 4.149 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.946 -5.910 20.310 21.356 hybrid contribution -0.201 -0.972 -0.866 1.318 sum 2.745 -6.883 19.443 20.807 Atomic orbital electron populations 1.21756 0.95527 1.01004 1.00536 1.20947 0.95715 0.98329 0.93807 0.93696 1.19631 0.96082 0.95256 0.93312 1.21520 1.34368 1.08235 0.91390 0.94812 1.25970 0.96989 1.00868 0.95571 1.70072 1.49365 1.41491 0.98698 0.85742 0.79444 0.79769 0.78248 1.19383 1.21118 1.17125 1.20861 0.95245 0.98799 0.93693 0.92413 1.21299 0.95113 0.98812 0.99323 1.21909 0.99199 0.97244 0.96181 1.21891 0.98837 0.91734 0.94583 1.61562 1.20581 1.40021 1.05130 1.22493 1.01978 1.00397 0.87159 1.21002 0.88165 0.99053 0.98373 1.20739 1.01508 0.99174 0.93497 0.95101 0.93354 0.91089 0.96231 0.97218 0.92746 0.94049 0.92350 0.91734 0.92725 0.90723 0.94625 0.95260 0.90842 0.90738 0.90271 0.94740 0.92104 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.61 71.98 0.62 -4.23 16 2 C -0.07 -2.74 1.87 -10.80 -0.02 -2.76 16 3 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.01 -0.27 3.38 29.85 0.10 -0.17 16 5 C -0.52 -30.40 8.96 25.60 0.23 -30.17 16 6 H 0.03 2.18 7.33 -2.91 -0.02 2.16 16 7 C 0.00 0.11 5.47 84.66 0.46 0.58 16 8 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 9 Si 0.94 45.66 27.47 68.60 1.88 47.54 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 13 C -0.07 -2.12 1.44 -11.10 -0.02 -2.14 16 14 H 0.06 1.84 7.15 -2.39 -0.02 1.82 16 15 C -0.11 -3.37 4.86 30.21 0.15 -3.23 16 16 C -0.11 -2.77 6.14 31.39 0.19 -2.58 16 17 C 0.06 1.29 5.18 87.16 0.45 1.74 16 18 N -0.55 -11.82 4.48 -938.17 -4.21 -16.03 16 19 C 0.03 0.43 9.19 127.69 1.17 1.61 16 20 C 0.06 1.31 4.96 83.94 0.42 1.73 16 21 C -0.11 -2.86 4.82 28.92 0.14 -2.72 16 22 H 0.03 1.32 6.98 -2.39 -0.02 1.30 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 2.13 6.00 -2.39 -0.01 2.11 16 25 H 0.02 0.94 5.16 -2.39 -0.01 0.93 16 26 H 0.01 0.45 7.57 -2.38 -0.02 0.44 16 27 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.04 1.50 5.69 -2.39 -0.01 1.49 16 29 H 0.06 1.81 7.38 -2.39 -0.02 1.79 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.38 7.49 -2.39 -0.02 1.36 16 33 H 0.04 0.82 6.50 -2.39 -0.02 0.80 16 34 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 1.05 8.01 -2.38 -0.02 1.03 16 36 H 0.07 1.05 8.05 -2.39 -0.02 1.04 16 37 H 0.08 1.43 7.74 -2.39 -0.02 1.41 16 38 H 0.03 0.75 7.24 -2.39 -0.02 0.73 16 39 H 0.06 1.62 7.59 -2.38 -0.02 1.60 16 40 H 0.08 1.90 5.53 -2.39 -0.01 1.89 16 Total: -1.00 -65.95 292.00 2.80 -63.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.93 Total: 8.72 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 3.90 Total: -42.35 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -3.91 Total: -77.07 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.54 kcal Total: -65.95 2.80 -63.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.238 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds