Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46767 * 2 1 4 4 C 1.53004 * 109.46881 * 119.99626 * 2 1 3 5 5 C 1.50693 * 109.47273 * 295.97675 * 4 2 1 6 6 H 1.08000 * 120.00453 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99934 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00057 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99697 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46828 * 269.99801 * 9 7 5 11 11 H 1.48488 * 109.47249 * 29.99704 * 9 7 5 12 12 H 1.48502 * 109.47015 * 150.00004 * 9 7 5 13 13 C 1.52993 * 109.47073 * 240.00093 * 2 1 3 14 14 H 1.09005 * 109.57301 * 301.46477 * 13 2 1 15 15 C 1.54529 * 109.57334 * 181.21860 * 13 2 1 16 16 C 1.45870 * 111.67130 * 162.95742 * 15 13 2 17 17 C 1.53977 * 112.67421 * 61.49662 * 16 15 13 18 18 N 1.44298 * 108.31249 * 278.59440 * 17 16 15 19 19 C 1.46903 * 111.00148 * 221.34270 * 18 17 16 20 20 C 1.47943 * 113.64417 * 95.39116 * 18 17 16 21 21 C 1.50532 * 109.57541 * 61.71627 * 13 2 1 22 22 H 1.08996 * 109.46734 * 182.91019 * 1 2 3 23 23 H 1.08998 * 109.46980 * 302.90536 * 1 2 3 24 24 H 1.08997 * 109.46902 * 62.90719 * 1 2 3 25 25 H 1.09004 * 109.46345 * 175.97754 * 4 2 1 26 26 H 1.08996 * 109.46981 * 55.98619 * 4 2 1 27 27 H 0.97003 * 119.99526 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.03692 * 283.52537 * 15 13 2 29 29 H 1.09004 * 109.03757 * 42.39422 * 15 13 2 30 30 H 1.09003 * 108.84194 * 182.31861 * 16 15 13 31 31 H 1.08998 * 108.84295 * 300.66931 * 16 15 13 32 32 H 1.09004 * 109.69047 * 38.29509 * 17 16 15 33 33 H 1.08997 * 109.69596 * 158.84339 * 17 16 15 34 34 H 1.09001 * 109.46826 * 56.04482 * 19 18 17 35 35 H 1.09003 * 109.47074 * 176.04241 * 19 18 17 36 36 H 1.08997 * 109.46850 * 296.04443 * 19 18 17 37 37 H 1.09007 * 108.71022 * 79.13844 * 20 18 17 38 38 H 1.08998 * 108.71413 * 197.27088 * 20 18 17 39 39 H 1.09000 * 108.79210 * 332.45352 * 21 13 2 40 40 H 1.08996 * 108.79099 * 90.67022 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6207 0.0445 2.4777 6 1 1.0475 0.9542 2.3775 7 6 1.9681 -0.4171 3.7297 8 7 1.6017 0.2508 4.8017 9 14 2.9590 -1.9911 3.9031 10 1 2.0349 -3.1491 4.0051 11 1 3.8334 -2.1590 2.7147 12 1 3.7963 -1.9166 5.1273 13 6 2.0400 -0.7212 -1.2492 14 1 1.6563 -1.7414 -1.2641 15 6 3.5850 -0.7495 -1.2362 16 6 4.1134 -1.7447 -2.1625 17 6 3.7198 -1.4631 -3.6243 18 7 2.3804 -1.9562 -3.8363 19 6 2.2660 -2.6263 -5.1385 20 6 1.3352 -0.9209 -3.6792 21 6 1.5745 0.0107 -2.4795 22 1 -0.3633 -1.0263 0.0522 23 1 -0.3633 0.5583 0.8628 24 1 -0.3633 0.4680 -0.9149 25 1 3.1277 -0.7840 1.2139 26 1 1.6191 -1.7259 1.2861 27 1 1.8465 -0.0737 5.6825 28 1 3.9610 0.2340 -1.5183 29 1 3.9279 -0.9842 -0.2285 30 1 5.2007 -1.7544 -2.0863 31 1 3.7340 -2.7263 -1.8787 32 1 3.7503 -0.3898 -3.8126 33 1 4.4105 -1.9735 -4.2955 34 1 3.0067 -3.4234 -5.2032 35 1 1.2669 -3.0494 -5.2429 36 1 2.4396 -1.9034 -5.9356 37 1 1.2988 -0.3201 -4.5879 38 1 0.3719 -1.4137 -3.5479 39 1 0.6454 0.5315 -2.2477 40 1 2.3282 0.7481 -2.7555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -17.516872 kcal Electronic energy + Delta-G solvation = -16532.942959 eV Core-core repulsion = 14153.758736 eV Total energy + Delta-G solvation = -2379.184222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32881 -36.22088 -33.28065 -32.46876 -31.00067 -27.52125 -27.51022 -24.89677 -24.24943 -22.46312 -20.26757 -19.59886 -18.77102 -16.79813 -15.86771 -15.48148 -14.78381 -14.23322 -13.94686 -13.79164 -13.25630 -13.04989 -12.95315 -12.56127 -12.34669 -11.80597 -11.69996 -11.35516 -11.31027 -11.12837 -10.90371 -10.62998 -10.50109 -10.36711 -10.13300 -9.89931 -9.61310 -9.47184 -9.09508 -8.86732 -8.43850 -8.14588 -5.96146 -3.91910 3.36513 3.43646 3.48182 3.95139 4.52779 4.92291 5.01414 5.14129 5.21879 5.28922 5.36932 5.40395 5.42176 5.57001 5.70545 5.75212 5.82821 5.89704 5.96205 6.11727 6.17138 6.22107 6.32768 6.43117 6.53502 6.61057 6.69564 6.74963 6.82782 7.06026 7.10324 7.15091 7.18956 7.31147 7.46759 7.61951 7.91479 8.64603 9.10235 9.67719 11.17512 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.007014 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.180774 B = 3991.154392 C = 4407.382813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 H 0.057 0.943 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.908 5.908 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.265 1.265 12 H -0.290 1.290 13 C -0.073 4.073 14 H 0.073 0.927 15 C -0.121 4.121 16 C -0.110 4.110 17 C 0.064 3.936 18 N -0.552 5.552 19 C 0.031 3.969 20 C 0.066 3.934 21 C -0.121 4.121 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.035 0.965 25 H 0.020 0.980 26 H 0.009 0.991 27 H 0.261 0.739 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -3.822 -18.318 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.547 5.547 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.216 1.216 13 C -0.091 4.091 14 H 0.091 0.909 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.064 4.064 18 N -0.277 5.277 19 C -0.117 4.117 20 C -0.061 4.061 21 C -0.158 4.158 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.395 -4.141 -17.781 18.413 hybrid contribution 0.642 -0.221 -0.365 0.771 sum 3.037 -4.362 -18.146 18.908 Atomic orbital electron populations 1.21796 0.96287 1.01036 1.00106 1.21039 0.94989 0.99086 0.94068 0.92415 1.19703 0.96079 0.95640 0.93307 1.21210 1.34311 1.10187 0.89231 0.91012 1.25031 0.95744 0.96873 0.95982 1.69923 1.47255 1.39656 0.97913 0.86821 0.80827 0.84349 0.77557 1.20450 1.18962 1.21617 1.20942 0.94437 1.00082 0.93670 0.90863 1.20742 0.96186 0.98529 1.00368 1.20483 0.99256 1.00938 0.94149 1.21819 0.88950 0.98228 0.97424 1.60690 1.04194 1.31964 1.30823 1.22366 1.02327 0.98075 0.88947 1.22369 0.94698 0.92045 0.96972 1.21585 1.02076 0.97620 0.94519 0.93719 0.91874 0.94617 0.96201 0.97246 0.92942 0.93219 0.90687 0.92876 0.91353 0.94091 0.92171 0.91617 0.91728 0.96252 0.95695 0.91306 0.90611 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.75 37.16 0.33 -2.22 16 2 C -0.07 -1.45 1.91 -90.62 -0.17 -1.62 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.25 3.31 -27.88 -0.09 -0.34 16 5 C -0.51 -14.60 8.99 -34.44 -0.31 -14.91 16 6 H 0.07 2.20 7.23 -52.49 -0.38 1.82 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 9 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 C -0.07 -1.20 1.47 -91.05 -0.13 -1.34 16 14 H 0.07 1.30 7.80 -51.93 -0.40 0.89 16 15 C -0.12 -1.93 4.67 -29.30 -0.14 -2.06 16 16 C -0.11 -1.51 5.37 -29.60 -0.16 -1.67 16 17 C 0.06 0.78 5.41 -4.71 -0.03 0.75 16 18 N -0.55 -6.90 4.26 -243.02 -1.03 -7.94 16 19 C 0.03 0.31 9.30 60.07 0.56 0.87 16 20 C 0.07 0.82 5.43 -2.85 -0.02 0.81 16 21 C -0.12 -1.68 4.70 -27.57 -0.13 -1.81 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 1.32 6.97 -51.93 -0.36 0.96 16 24 H 0.03 0.56 5.98 -51.93 -0.31 0.25 16 25 H 0.02 0.48 4.93 -51.93 -0.26 0.22 16 26 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.05 0.76 7.60 -51.93 -0.39 0.36 16 29 H 0.07 1.36 5.59 -51.93 -0.29 1.07 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.04 0.50 6.79 -51.93 -0.35 0.15 16 33 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 34 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.02 0.28 8.02 -51.92 -0.42 -0.13 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.05 5.50 -51.93 -0.29 0.76 16 40 H 0.05 0.71 6.67 -51.93 -0.35 0.36 16 LS Contribution 292.61 15.07 4.41 4.41 Total: -1.00 -30.17 292.61 -8.03 -38.20 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -7.12 Total: -2.84 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -0.39 Total: -21.75 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.26 Total: -35.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.17 -8.03 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.682 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds