Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46767 * 2 1 4 4 C 1.53004 * 109.46881 * 119.99626 * 2 1 3 5 5 C 1.50693 * 109.47273 * 295.97675 * 4 2 1 6 6 H 1.08000 * 120.00453 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99934 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00057 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99697 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46828 * 269.99801 * 9 7 5 11 11 H 1.48488 * 109.47249 * 29.99704 * 9 7 5 12 12 H 1.48502 * 109.47015 * 150.00004 * 9 7 5 13 13 C 1.52993 * 109.47073 * 240.00093 * 2 1 3 14 14 H 1.09005 * 109.57301 * 301.46477 * 13 2 1 15 15 C 1.54529 * 109.57334 * 181.21860 * 13 2 1 16 16 C 1.45870 * 111.67130 * 162.95742 * 15 13 2 17 17 C 1.53977 * 112.67421 * 61.49662 * 16 15 13 18 18 N 1.44298 * 108.31249 * 278.59440 * 17 16 15 19 19 C 1.46903 * 111.00148 * 221.34270 * 18 17 16 20 20 C 1.47943 * 113.64417 * 95.39116 * 18 17 16 21 21 C 1.50532 * 109.57541 * 61.71627 * 13 2 1 22 22 H 1.08996 * 109.46734 * 182.91019 * 1 2 3 23 23 H 1.08998 * 109.46980 * 302.90536 * 1 2 3 24 24 H 1.08997 * 109.46902 * 62.90719 * 1 2 3 25 25 H 1.09004 * 109.46345 * 175.97754 * 4 2 1 26 26 H 1.08996 * 109.46981 * 55.98619 * 4 2 1 27 27 H 0.97003 * 119.99526 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.03692 * 283.52537 * 15 13 2 29 29 H 1.09004 * 109.03757 * 42.39422 * 15 13 2 30 30 H 1.09003 * 108.84194 * 182.31861 * 16 15 13 31 31 H 1.08998 * 108.84295 * 300.66931 * 16 15 13 32 32 H 1.09004 * 109.69047 * 38.29509 * 17 16 15 33 33 H 1.08997 * 109.69596 * 158.84339 * 17 16 15 34 34 H 1.09001 * 109.46826 * 56.04482 * 19 18 17 35 35 H 1.09003 * 109.47074 * 176.04241 * 19 18 17 36 36 H 1.08997 * 109.46850 * 296.04443 * 19 18 17 37 37 H 1.09007 * 108.71022 * 79.13844 * 20 18 17 38 38 H 1.08998 * 108.71413 * 197.27088 * 20 18 17 39 39 H 1.09000 * 108.79210 * 332.45352 * 21 13 2 40 40 H 1.08996 * 108.79099 * 90.67022 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6207 0.0445 2.4777 6 1 1.0475 0.9542 2.3775 7 6 1.9681 -0.4171 3.7297 8 7 1.6017 0.2508 4.8017 9 14 2.9590 -1.9911 3.9031 10 1 2.0349 -3.1491 4.0051 11 1 3.8334 -2.1590 2.7147 12 1 3.7963 -1.9166 5.1273 13 6 2.0400 -0.7212 -1.2492 14 1 1.6563 -1.7414 -1.2641 15 6 3.5850 -0.7495 -1.2362 16 6 4.1134 -1.7447 -2.1625 17 6 3.7198 -1.4631 -3.6243 18 7 2.3804 -1.9562 -3.8363 19 6 2.2660 -2.6263 -5.1385 20 6 1.3352 -0.9209 -3.6792 21 6 1.5745 0.0107 -2.4795 22 1 -0.3633 -1.0263 0.0522 23 1 -0.3633 0.5583 0.8628 24 1 -0.3633 0.4680 -0.9149 25 1 3.1277 -0.7840 1.2139 26 1 1.6191 -1.7259 1.2861 27 1 1.8465 -0.0737 5.6825 28 1 3.9610 0.2340 -1.5183 29 1 3.9279 -0.9842 -0.2285 30 1 5.2007 -1.7544 -2.0863 31 1 3.7340 -2.7263 -1.8787 32 1 3.7503 -0.3898 -3.8126 33 1 4.4105 -1.9735 -4.2955 34 1 3.0067 -3.4234 -5.2032 35 1 1.2669 -3.0494 -5.2429 36 1 2.4396 -1.9034 -5.9356 37 1 1.2988 -0.3201 -4.5879 38 1 0.3719 -1.4137 -3.5479 39 1 0.6454 0.5315 -2.2477 40 1 2.3282 0.7481 -2.7555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -35.750926 kcal Electronic energy + Delta-G solvation = -16533.733646 eV Core-core repulsion = 14153.758736 eV Total energy + Delta-G solvation = -2379.974910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47910 -37.55139 -34.94018 -34.02148 -32.50285 -29.35748 -28.56248 -26.09331 -25.47946 -24.07846 -21.60849 -20.82719 -20.22663 -18.91033 -16.97228 -16.59051 -16.25978 -15.71186 -15.36531 -15.17839 -14.79207 -14.34316 -14.15536 -14.03958 -13.53729 -13.42630 -12.97253 -12.78020 -12.76882 -12.51046 -12.45770 -12.01386 -11.77352 -11.70030 -11.56343 -11.47446 -11.41887 -11.12286 -10.77301 -10.69475 -10.57293 -9.03339 -8.25118 -6.25936 1.35327 1.36430 1.48877 2.38202 3.07182 3.10418 3.79142 3.97562 4.07405 4.17294 4.26402 4.31552 4.46977 4.58920 4.61254 4.63075 4.72027 4.79872 4.85767 4.92635 4.96294 5.06084 5.07296 5.08484 5.17140 5.27379 5.34174 5.38955 5.43505 5.47810 5.49975 5.58564 5.76701 5.79071 5.88136 6.26508 6.37179 6.41300 6.81684 7.37314 8.91808 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.007014 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.180774 B = 3991.154392 C = 4407.382813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 H 0.046 0.954 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.248 1.248 12 H -0.285 1.285 13 C -0.062 4.062 14 H 0.064 0.936 15 C -0.118 4.118 16 C -0.108 4.108 17 C 0.069 3.931 18 N -0.570 5.570 19 C 0.032 3.968 20 C 0.070 3.930 21 C -0.116 4.116 22 H 0.045 0.955 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.022 0.978 26 H 0.008 0.992 27 H 0.264 0.736 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 -5.192 -20.798 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.052 0.948 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.171 1.171 12 H -0.211 1.211 13 C -0.080 4.080 14 H 0.083 0.917 15 C -0.156 4.156 16 C -0.146 4.146 17 C -0.060 4.060 18 N -0.295 5.295 19 C -0.116 4.116 20 C -0.057 4.057 21 C -0.154 4.154 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.266 -5.512 -20.287 21.274 hybrid contribution 0.322 0.285 0.418 0.599 sum 3.588 -5.227 -19.869 20.856 Atomic orbital electron populations 1.21730 0.95640 1.00913 1.00417 1.20974 0.95586 0.98311 0.94058 0.93577 1.19655 0.96199 0.95208 0.93263 1.21536 1.33329 1.09288 0.91314 0.94754 1.25962 0.97139 1.00684 0.95588 1.70074 1.49105 1.41873 0.98601 0.85750 0.79520 0.79763 0.78204 1.19535 1.17113 1.21091 1.20779 0.94911 0.99258 0.93079 0.91737 1.20712 0.95638 0.99621 0.99587 1.20444 0.99962 0.99328 0.94910 1.21767 0.89331 0.98517 0.96362 1.60660 1.04210 1.32087 1.32561 1.22404 1.02979 0.98288 0.87924 1.22299 0.94839 0.92013 0.96569 1.21501 1.02122 0.97812 0.93930 0.93605 0.95062 0.91217 0.95956 0.97365 0.92764 0.92681 0.93288 0.91555 0.92533 0.94053 0.90275 0.90798 0.91266 0.95303 0.94183 0.91203 0.90472 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.75 71.98 0.63 -4.25 16 2 C -0.07 -2.79 1.91 -10.79 -0.02 -2.81 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.01 -0.30 3.31 29.85 0.10 -0.20 16 5 C -0.52 -30.37 8.99 25.60 0.23 -30.14 16 6 H 0.03 2.21 7.23 -2.91 -0.02 2.19 16 7 C 0.00 0.13 5.47 84.66 0.46 0.59 16 8 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 9 Si 0.94 45.88 27.47 68.60 1.88 47.77 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 13 C -0.06 -1.95 1.47 -11.08 -0.02 -1.96 16 14 H 0.06 2.18 7.80 -2.38 -0.02 2.16 16 15 C -0.12 -3.59 4.67 28.93 0.14 -3.45 16 16 C -0.11 -2.72 5.37 28.74 0.15 -2.56 16 17 C 0.07 1.45 5.41 87.12 0.47 1.92 16 18 N -0.57 -12.46 4.26 -922.79 -3.93 -16.39 16 19 C 0.03 0.52 9.30 127.69 1.19 1.71 16 20 C 0.07 1.52 5.43 86.36 0.47 1.99 16 21 C -0.12 -2.96 4.70 30.05 0.14 -2.82 16 22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.03 1.34 6.97 -2.39 -0.02 1.32 16 24 H 0.07 2.11 5.98 -2.39 -0.01 2.10 16 25 H 0.02 1.07 4.93 -2.38 -0.01 1.06 16 26 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 27 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.05 1.59 7.60 -2.39 -0.02 1.57 16 29 H 0.05 1.73 5.59 -2.39 -0.01 1.71 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 32 H 0.04 0.88 6.79 -2.38 -0.02 0.86 16 33 H 0.08 1.38 7.51 -2.39 -0.02 1.36 16 34 H 0.07 1.09 7.98 -2.39 -0.02 1.07 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.04 0.77 8.02 -2.38 -0.02 0.75 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.94 5.50 -2.39 -0.01 1.92 16 40 H 0.06 1.40 6.67 -2.39 -0.02 1.38 16 Total: -1.00 -65.87 292.61 3.13 -62.74 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.93 Total: 8.96 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 3.94 Total: -41.99 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -3.63 Total: -77.48 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.77 kcal Total: -65.87 3.13 -62.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.990 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds