Wall clock time and date at job start Mon Mar 30 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47255 * 2 1 4 4 C 1.53004 * 109.47269 * 120.00105 * 2 1 3 5 5 C 1.50700 * 109.46636 * 294.60580 * 4 2 1 6 6 H 1.07998 * 120.00859 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99549 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47391 * 59.99988 * 9 7 5 11 11 H 1.48504 * 109.46834 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47385 * 299.99508 * 9 7 5 13 13 C 1.52997 * 109.47398 * 240.00065 * 2 1 3 14 14 H 1.09007 * 108.92122 * 293.35029 * 13 2 1 15 15 C 1.45880 * 108.93915 * 51.97221 * 13 2 1 16 16 C 1.54306 * 112.19389 * 181.81496 * 15 13 2 17 17 C 1.50446 * 108.49512 * 281.45058 * 16 15 13 18 18 N 1.48007 * 112.82089 * 93.72894 * 17 16 15 19 19 C 1.46904 * 110.99915 * 191.34783 * 18 17 16 20 20 C 1.47998 * 114.63172 * 318.09678 * 18 17 16 21 21 C 1.50447 * 112.83461 * 318.08847 * 20 18 17 22 22 H 1.09005 * 109.46652 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47180 * 300.00202 * 1 2 3 24 24 H 1.09004 * 109.46989 * 60.00343 * 1 2 3 25 25 H 1.08999 * 109.46532 * 54.59989 * 4 2 1 26 26 H 1.08995 * 109.47264 * 174.60104 * 4 2 1 27 27 H 0.96997 * 120.00130 * 180.02562 * 8 7 5 28 28 H 1.09000 * 108.93702 * 302.51000 * 15 13 2 29 29 H 1.09005 * 108.93722 * 61.20895 * 15 13 2 30 30 H 1.08999 * 109.63387 * 41.15091 * 16 15 13 31 31 H 1.08998 * 109.63664 * 161.54775 * 16 15 13 32 32 H 1.08999 * 108.81644 * 214.59344 * 17 16 15 33 33 H 1.09001 * 108.81061 * 332.87359 * 17 16 15 34 34 H 1.08991 * 109.46743 * 63.95861 * 19 18 17 35 35 H 1.09007 * 109.46519 * 183.95794 * 19 18 17 36 36 H 1.08995 * 109.47197 * 303.95397 * 19 18 17 37 37 H 1.08995 * 108.81237 * 197.21755 * 20 18 17 38 38 H 1.09003 * 108.81116 * 78.95046 * 20 18 17 39 39 H 1.09000 * 109.62987 * 334.01825 * 21 20 18 40 40 H 1.09002 * 109.63299 * 213.42836 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6497 0.0621 2.4760 6 1 1.0939 0.9825 2.3749 7 6 2.0022 -0.3963 3.7277 8 7 2.6787 -1.5174 3.8510 9 14 1.5190 0.5750 5.2483 10 1 0.0400 0.6912 5.3123 11 1 2.0129 -0.1257 6.4609 12 1 2.1197 1.9315 5.1809 13 6 2.0401 -0.7212 -1.2492 14 1 1.7726 -1.7758 -1.1825 15 6 1.3965 -0.1448 -2.4247 16 6 1.8252 -0.8499 -3.7285 17 6 3.1852 -0.3405 -4.1216 18 7 4.2853 -1.1912 -3.6149 19 6 5.5848 -0.5272 -3.7837 20 6 4.1084 -1.6647 -2.2239 21 6 3.5771 -0.5970 -1.3068 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.5999 -1.7172 1.2988 26 1 3.1257 -0.8058 1.2022 27 1 2.9263 -1.8401 4.7316 28 1 0.3156 -0.2318 -2.3145 29 1 1.6613 0.9105 -2.4912 30 1 1.8707 -1.9265 -3.5648 31 1 1.1063 -0.6295 -4.5176 32 1 3.2446 -0.2999 -5.2092 33 1 3.3104 0.6679 -3.7270 34 1 5.6124 0.3770 -3.1757 35 1 6.3810 -1.2016 -3.4685 36 1 5.7251 -0.2645 -4.8322 37 1 5.0709 -2.0073 -1.8442 38 1 3.4140 -2.5050 -2.2244 39 1 3.8510 0.3855 -1.6913 40 1 3.9930 -0.7316 -0.3083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:08 Heat of formation + Delta-G solvation = -39.445336 kcal Electronic energy + Delta-G solvation = -16502.064504 eV Core-core repulsion = 14121.929392 eV Total energy + Delta-G solvation = -2380.135112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73765 -37.49744 -35.04079 -33.60186 -32.33065 -29.53990 -27.95760 -26.61143 -24.99366 -24.74193 -21.79728 -20.59208 -20.45878 -18.53525 -17.00239 -16.60884 -16.46785 -15.86591 -15.39663 -14.84580 -14.71647 -14.14873 -13.99156 -13.87304 -13.54595 -13.25926 -13.11079 -12.81113 -12.75108 -12.66974 -12.40361 -12.28807 -12.01312 -11.86089 -11.71454 -11.49277 -11.43245 -11.13162 -10.73625 -10.59753 -10.46680 -9.10333 -8.17161 -6.26130 1.37981 1.40473 1.48230 2.41077 3.00701 3.15593 3.71932 3.85727 4.02131 4.17218 4.25496 4.41086 4.46090 4.56127 4.56717 4.64629 4.69766 4.75253 4.86575 4.92342 4.98573 5.03057 5.06561 5.10142 5.17210 5.25507 5.28289 5.34089 5.40678 5.49404 5.52928 5.54435 5.69066 5.89895 5.92277 6.19362 6.24352 6.32073 6.90520 7.41628 8.94279 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039707 B = 0.006405 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.989553 B = 4370.654104 C = 4806.160680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 H 0.045 0.955 4 C 0.034 3.966 5 C -0.532 4.532 6 H 0.057 0.943 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.269 1.269 13 C -0.070 4.070 14 H 0.051 0.949 15 C -0.114 4.114 16 C -0.115 4.115 17 C 0.063 3.937 18 N -0.561 5.561 19 C 0.027 3.973 20 C 0.066 3.934 21 C -0.137 4.137 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.070 0.930 25 H -0.016 1.016 26 H -0.004 1.004 27 H 0.261 0.739 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.028 0.972 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 2.737 -15.853 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 H 0.063 0.937 4 C -0.003 4.003 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.089 4.089 14 H 0.070 0.930 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.064 4.064 18 N -0.286 5.286 19 C -0.121 4.121 20 C -0.061 4.061 21 C -0.175 4.175 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.002 0.998 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.571 2.233 -16.010 16.175 hybrid contribution 0.052 0.896 1.940 2.138 sum 0.623 3.129 -14.070 14.427 Atomic orbital electron populations 1.21755 0.95289 1.00784 1.00872 1.21142 0.95890 0.98128 0.94410 0.93664 1.19069 0.94619 0.94119 0.92448 1.21674 1.34681 1.08222 0.92441 0.92496 1.25926 0.95304 0.96102 1.02524 1.70091 1.40456 1.22717 1.24252 0.85613 0.78924 0.78802 0.78397 1.19272 1.20943 1.19381 1.20090 0.94426 0.99393 0.94947 0.93030 1.20735 1.01015 0.99532 0.93803 1.21408 0.96013 1.00679 0.97184 1.21838 0.90426 0.94064 1.00098 1.62007 1.03176 1.42767 1.20618 1.22384 0.90614 0.97173 1.01936 1.21772 1.00952 0.96973 0.86414 1.21885 0.96307 0.99553 0.99803 0.94024 0.94185 0.91085 0.99770 0.98603 0.92982 0.90842 0.92544 0.91701 0.89087 0.89819 0.95419 0.96471 0.91194 0.90106 0.91716 0.91450 0.92500 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 8.35 71.98 0.60 -4.23 16 2 C -0.08 -3.17 1.90 -10.79 -0.02 -3.19 16 3 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.03 1.82 4.34 29.85 0.13 1.95 16 5 C -0.53 -30.55 8.41 25.60 0.22 -30.33 16 6 H 0.06 3.15 7.08 -2.91 -0.02 3.13 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 8 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 C -0.07 -2.37 1.37 -12.53 -0.02 -2.39 16 14 H 0.05 1.86 7.51 -2.38 -0.02 1.84 16 15 C -0.11 -3.02 4.09 28.85 0.12 -2.90 16 16 C -0.12 -2.56 5.63 30.21 0.17 -2.39 16 17 C 0.06 1.39 4.99 85.26 0.43 1.82 16 18 N -0.56 -14.00 4.94 -926.50 -4.57 -18.57 16 19 C 0.03 0.58 9.41 127.69 1.20 1.78 16 20 C 0.07 1.93 5.15 85.27 0.44 2.37 16 21 C -0.14 -4.58 4.90 30.21 0.15 -4.44 16 22 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.04 1.61 6.98 -2.39 -0.02 1.60 16 24 H 0.07 2.12 6.25 -2.38 -0.01 2.11 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.00 -0.24 6.05 -2.39 -0.01 -0.26 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.07 1.86 5.92 -2.39 -0.01 1.85 16 29 H 0.06 1.49 7.51 -2.38 -0.02 1.47 16 30 H 0.06 1.58 7.08 -2.39 -0.02 1.56 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 0.65 6.48 -2.39 -0.02 0.64 16 34 H 0.02 0.38 7.79 -2.39 -0.02 0.37 16 35 H 0.07 1.42 7.94 -2.38 -0.02 1.40 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.85 7.72 -2.39 -0.02 1.83 16 38 H 0.07 2.03 6.59 -2.39 -0.02 2.01 16 39 H 0.06 1.84 6.66 -2.39 -0.02 1.83 16 40 H 0.05 2.05 5.88 -2.39 -0.01 2.04 16 Total: -1.00 -63.52 293.67 2.59 -60.93 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.98 Total: 9.66 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.87 Total: -41.56 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -4.29 Total: -76.07 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.52 2.59 -60.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.482 kcal (2) G-P(sol) polarization free energy of solvation -63.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds