Wall clock time and date at job start Mon Mar 30 2020 03:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46909 * 2 1 4 4 C 1.46900 * 111.00068 * 183.13887 * 3 2 1 5 5 C 1.50703 * 109.46957 * 295.42918 * 4 3 2 6 6 H 1.08001 * 119.99880 * 145.41513 * 5 4 3 7 7 C 1.37880 * 119.99828 * 325.42063 * 5 4 3 8 8 N 1.31519 * 119.99592 * 173.26428 * 7 5 4 9 9 Si 1.86793 * 120.00263 * 353.26074 * 7 5 4 10 10 H 1.48496 * 109.47261 * 88.79629 * 9 7 5 11 11 H 1.48503 * 109.47301 * 208.79645 * 9 7 5 12 12 H 1.48500 * 109.47108 * 328.79646 * 9 7 5 13 13 C 1.52994 * 109.47007 * 55.43037 * 4 3 2 14 14 C 1.53004 * 109.46764 * 180.02562 * 13 4 3 15 15 C 1.52998 * 109.47273 * 299.99531 * 14 13 4 16 16 C 1.52997 * 109.47463 * 300.00597 * 15 14 13 17 17 C 1.53004 * 109.47273 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46694 * 60.00489 * 15 14 13 19 19 C 1.52997 * 109.47137 * 175.43089 * 4 3 2 20 20 H 1.09004 * 109.47103 * 185.63777 * 1 2 3 21 21 H 1.09005 * 109.46987 * 305.63459 * 1 2 3 22 22 H 1.08996 * 109.47616 * 65.63791 * 1 2 3 23 23 H 1.08999 * 109.47138 * 240.00142 * 2 1 3 24 24 H 1.09004 * 109.46995 * 119.99738 * 2 1 3 25 25 H 1.00903 * 111.00244 * 307.09091 * 3 2 1 26 26 H 0.97004 * 119.99352 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47169 * 299.99682 * 13 4 3 28 28 H 1.08995 * 109.47242 * 60.00523 * 13 4 3 29 29 H 1.09004 * 109.47030 * 179.97438 * 14 13 4 30 30 H 1.09004 * 109.47195 * 60.00279 * 14 13 4 31 31 H 1.08993 * 109.47144 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.46886 * 299.99567 * 16 15 14 33 33 H 1.08996 * 109.47440 * 59.99461 * 16 15 14 34 34 H 1.08995 * 109.47007 * 300.00611 * 17 15 14 35 35 H 1.08995 * 109.46894 * 60.00290 * 17 15 14 36 36 H 1.08996 * 109.46824 * 180.02562 * 17 15 14 37 37 H 1.09005 * 109.47066 * 180.02562 * 18 15 14 38 38 H 1.08995 * 109.47515 * 60.00074 * 18 15 14 39 39 H 1.09004 * 109.47457 * 299.99918 * 19 4 3 40 40 H 1.09008 * 109.47540 * 60.00009 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4862 1.4249 -0.0751 5 6 4.0699 0.8054 1.1685 6 1 4.9898 0.2425 1.1107 7 6 3.4294 0.9572 2.3801 8 7 3.8635 0.3091 3.4390 9 14 1.9455 2.0833 2.5176 10 1 0.7114 1.3151 2.2142 11 1 1.8631 2.6276 3.8968 12 1 2.0821 3.2024 1.5511 13 6 3.9554 0.6425 -1.3032 14 6 5.4829 0.6836 -1.3810 15 6 5.9490 2.1365 -1.4934 16 6 5.3568 2.7659 -2.7560 17 6 7.4764 2.1776 -1.5719 18 6 5.4797 2.9190 -0.2652 19 6 3.9517 2.8780 -0.1877 20 1 -0.3633 -1.0227 0.1010 21 1 -0.3633 0.5988 0.8353 22 1 -0.3634 0.4239 -0.9361 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6045 1.9153 -0.7514 26 1 3.4127 0.4156 4.2913 27 1 3.6238 -0.3927 -1.2230 28 1 3.5333 1.0906 -2.2026 29 1 5.8173 0.1257 -2.2557 30 1 5.9047 0.2351 -0.4815 31 1 5.6885 3.8011 -2.8357 32 1 5.6912 2.2084 -3.6309 33 1 4.2687 2.7366 -2.7006 34 1 7.8986 1.7291 -0.6726 35 1 7.8104 1.6202 -2.4470 36 1 7.8084 3.2127 -1.6515 37 1 5.8113 3.9543 -0.3454 38 1 5.9015 2.4707 0.6343 39 1 3.5295 3.3262 -1.0872 40 1 3.6174 3.4356 0.6873 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:17 Heat of formation + Delta-G solvation = -15.723054 kcal Electronic energy + Delta-G solvation = -17480.882811 eV Core-core repulsion = 15101.776375 eV Total energy + Delta-G solvation = -2379.106436 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31293 -35.90928 -32.35823 -31.39801 -29.98305 -28.30128 -26.98572 -25.37235 -23.79902 -22.46176 -20.89693 -19.29769 -17.84372 -16.13773 -15.02778 -14.89317 -14.21080 -14.06556 -13.66502 -13.41309 -13.35398 -12.79462 -12.35662 -12.02502 -11.71604 -11.52839 -11.47509 -11.31267 -11.11494 -10.97550 -10.56347 -10.44717 -10.19049 -10.15165 -9.93346 -9.83096 -9.61694 -9.28965 -9.22005 -8.68609 -8.19489 -7.10231 -5.85549 -3.93446 3.77287 3.80453 4.01610 4.86464 5.08627 5.27198 5.38262 5.45307 5.52141 5.78398 5.84481 5.95798 5.96505 6.05276 6.12121 6.12895 6.19110 6.23022 6.34105 6.37062 6.41045 6.43993 6.50770 6.52861 6.65265 6.70028 6.77583 6.81971 6.96122 7.04181 7.08073 7.19186 7.31577 7.45296 7.82025 7.97420 8.40001 8.73595 9.10586 9.79682 11.21522 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.012109 C = 0.010418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.236424 B = 2311.719831 C = 2686.930280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.056 3.944 3 N -0.672 5.672 4 C 0.211 3.789 5 C -0.508 4.508 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.907 5.907 9 Si 0.965 3.035 10 H -0.289 1.289 11 H -0.353 1.353 12 H -0.274 1.274 13 C -0.129 4.129 14 C -0.094 4.094 15 C -0.062 4.062 16 C -0.140 4.140 17 C -0.138 4.138 18 C -0.093 4.093 19 C -0.107 4.107 20 H 0.050 0.950 21 H 0.063 0.937 22 H 0.041 0.959 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.317 0.683 26 H 0.259 0.741 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.029 0.971 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 2.910 -10.477 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.073 4.073 3 N -0.303 5.303 4 C 0.121 3.879 5 C -0.546 4.546 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.544 5.544 9 Si 0.806 3.194 10 H -0.217 1.217 11 H -0.288 1.288 12 H -0.201 1.201 13 C -0.168 4.168 14 C -0.132 4.132 15 C -0.062 4.062 16 C -0.197 4.197 17 C -0.195 4.195 18 C -0.131 4.131 19 C -0.145 4.145 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.107 0.893 25 H 0.134 0.866 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.154 2.895 -9.634 10.060 hybrid contribution -0.634 0.259 -0.769 1.030 sum -0.788 3.154 -10.403 10.899 Atomic orbital electron populations 1.21985 0.97113 1.01068 1.01308 1.21867 0.92942 0.90732 1.01717 1.60323 1.09764 1.12356 1.47868 1.19016 0.82571 0.91950 0.94325 1.20710 1.09839 1.34278 0.89743 0.90836 1.25144 0.97838 0.94969 0.95138 1.70017 1.41832 1.41889 1.00697 0.85430 0.82050 0.81014 0.70954 1.21675 1.28824 1.20148 1.22128 0.95859 1.00652 0.98181 1.21447 0.96269 0.94715 1.00791 1.20490 0.94064 0.96298 0.95361 1.21945 1.01389 0.99437 0.96936 1.21845 0.95888 1.00672 1.01135 1.21430 0.96436 0.97421 0.97791 1.21855 0.95014 0.98269 0.99398 0.93062 0.91814 0.93983 0.95509 0.89333 0.86622 0.93217 0.92691 0.94659 0.94399 0.90733 0.93665 0.93856 0.92175 0.92647 0.93611 0.93452 0.94214 0.90321 0.95223 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.05 37.16 0.37 -2.31 16 2 C 0.06 1.12 4.67 -3.82 -0.02 1.10 16 3 N -0.67 -13.97 2.03 -101.14 -0.21 -14.18 16 4 C 0.21 4.53 0.32 -132.76 -0.04 4.49 16 5 C -0.51 -13.33 6.25 -34.44 -0.22 -13.54 16 6 H 0.07 2.12 6.32 -52.49 -0.33 1.79 16 7 C 0.07 2.02 4.72 -17.82 -0.08 1.94 16 8 N -0.91 -27.69 13.96 55.43 0.77 -26.91 16 9 Si 0.96 24.66 23.39 -169.99 -3.98 20.69 16 10 H -0.29 -7.14 4.91 56.52 0.28 -6.86 16 11 H -0.35 -9.68 7.11 56.52 0.40 -9.28 16 12 H -0.27 -6.71 5.10 56.52 0.29 -6.42 16 13 C -0.13 -2.47 4.07 -26.73 -0.11 -2.58 16 14 C -0.09 -1.71 4.51 -26.73 -0.12 -1.83 16 15 C -0.06 -1.03 0.77 -154.51 -0.12 -1.15 16 16 C -0.14 -2.06 7.78 37.16 0.29 -1.77 16 17 C -0.14 -2.02 8.47 37.16 0.31 -1.71 16 18 C -0.09 -1.75 4.51 -26.70 -0.12 -1.87 16 19 C -0.11 -2.19 4.36 -26.71 -0.12 -2.30 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 1.19 6.35 -51.93 -0.33 0.86 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.03 0.50 6.05 -51.93 -0.31 0.19 16 24 H 0.09 2.08 6.46 -51.93 -0.34 1.75 16 25 H 0.32 5.88 8.63 -39.29 -0.34 5.54 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.05 1.10 6.27 -51.93 -0.33 0.77 16 28 H 0.03 0.62 6.43 -51.93 -0.33 0.28 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.54 6.30 -51.93 -0.33 1.21 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.92 4.81 -51.93 -0.25 0.67 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.70 7.21 -51.93 -0.37 1.32 16 39 H 0.03 0.55 6.43 -51.93 -0.33 0.21 16 40 H 0.06 1.45 5.47 -51.92 -0.28 1.17 16 LS Contribution 275.28 15.07 4.15 4.15 Total: -1.00 -28.84 275.28 -6.28 -35.13 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.06 Total: 2.67 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 0.03 Total: -21.54 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.57 Total: -41.09 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -3.98 Total: 20.69 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.84 -6.28 -35.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.404 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds