Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46909 * 2 1 4 4 C 1.46900 * 111.00068 * 183.13887 * 3 2 1 5 5 C 1.50703 * 109.46957 * 295.42918 * 4 3 2 6 6 H 1.08001 * 119.99880 * 145.41513 * 5 4 3 7 7 C 1.37880 * 119.99828 * 325.42063 * 5 4 3 8 8 N 1.31519 * 119.99592 * 173.26428 * 7 5 4 9 9 Si 1.86793 * 120.00263 * 353.26074 * 7 5 4 10 10 H 1.48496 * 109.47261 * 88.79629 * 9 7 5 11 11 H 1.48503 * 109.47301 * 208.79645 * 9 7 5 12 12 H 1.48500 * 109.47108 * 328.79646 * 9 7 5 13 13 C 1.52994 * 109.47007 * 55.43037 * 4 3 2 14 14 C 1.53004 * 109.46764 * 180.02562 * 13 4 3 15 15 C 1.52998 * 109.47273 * 299.99531 * 14 13 4 16 16 C 1.52997 * 109.47463 * 300.00597 * 15 14 13 17 17 C 1.53004 * 109.47273 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46694 * 60.00489 * 15 14 13 19 19 C 1.52997 * 109.47137 * 175.43089 * 4 3 2 20 20 H 1.09004 * 109.47103 * 185.63777 * 1 2 3 21 21 H 1.09005 * 109.46987 * 305.63459 * 1 2 3 22 22 H 1.08996 * 109.47616 * 65.63791 * 1 2 3 23 23 H 1.08999 * 109.47138 * 240.00142 * 2 1 3 24 24 H 1.09004 * 109.46995 * 119.99738 * 2 1 3 25 25 H 1.00903 * 111.00244 * 307.09091 * 3 2 1 26 26 H 0.97004 * 119.99352 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47169 * 299.99682 * 13 4 3 28 28 H 1.08995 * 109.47242 * 60.00523 * 13 4 3 29 29 H 1.09004 * 109.47030 * 179.97438 * 14 13 4 30 30 H 1.09004 * 109.47195 * 60.00279 * 14 13 4 31 31 H 1.08993 * 109.47144 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.46886 * 299.99567 * 16 15 14 33 33 H 1.08996 * 109.47440 * 59.99461 * 16 15 14 34 34 H 1.08995 * 109.47007 * 300.00611 * 17 15 14 35 35 H 1.08995 * 109.46894 * 60.00290 * 17 15 14 36 36 H 1.08996 * 109.46824 * 180.02562 * 17 15 14 37 37 H 1.09005 * 109.47066 * 180.02562 * 18 15 14 38 38 H 1.08995 * 109.47515 * 60.00074 * 18 15 14 39 39 H 1.09004 * 109.47457 * 299.99918 * 19 4 3 40 40 H 1.09008 * 109.47540 * 60.00009 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4862 1.4249 -0.0751 5 6 4.0699 0.8054 1.1685 6 1 4.9898 0.2425 1.1107 7 6 3.4294 0.9572 2.3801 8 7 3.8635 0.3091 3.4390 9 14 1.9455 2.0833 2.5176 10 1 0.7114 1.3151 2.2142 11 1 1.8631 2.6276 3.8968 12 1 2.0821 3.2024 1.5511 13 6 3.9554 0.6425 -1.3032 14 6 5.4829 0.6836 -1.3810 15 6 5.9490 2.1365 -1.4934 16 6 5.3568 2.7659 -2.7560 17 6 7.4764 2.1776 -1.5719 18 6 5.4797 2.9190 -0.2652 19 6 3.9517 2.8780 -0.1877 20 1 -0.3633 -1.0227 0.1010 21 1 -0.3633 0.5988 0.8353 22 1 -0.3634 0.4239 -0.9361 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6045 1.9153 -0.7514 26 1 3.4127 0.4156 4.2913 27 1 3.6238 -0.3927 -1.2230 28 1 3.5333 1.0906 -2.2026 29 1 5.8173 0.1257 -2.2557 30 1 5.9047 0.2351 -0.4815 31 1 5.6885 3.8011 -2.8357 32 1 5.6912 2.2084 -3.6309 33 1 4.2687 2.7366 -2.7006 34 1 7.8986 1.7291 -0.6726 35 1 7.8104 1.6202 -2.4470 36 1 7.8084 3.2127 -1.6515 37 1 5.8113 3.9543 -0.3454 38 1 5.9015 2.4707 0.6343 39 1 3.5295 3.3262 -1.0872 40 1 3.6174 3.4356 0.6873 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = -33.971399 kcal Electronic energy + Delta-G solvation = -17481.674119 eV Core-core repulsion = 15101.776375 eV Total energy + Delta-G solvation = -2379.897744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88088 -37.45254 -34.28527 -33.14402 -31.53845 -29.76923 -28.21723 -27.28229 -25.37564 -24.01378 -22.44938 -21.02415 -19.50826 -18.01384 -16.76472 -16.46072 -15.93315 -15.56478 -15.26565 -14.98921 -14.83787 -14.46021 -13.82832 -13.82296 -13.09398 -13.03363 -12.83650 -12.75740 -12.54011 -12.46014 -12.22830 -12.07026 -11.90492 -11.79966 -11.63876 -11.47559 -11.39802 -10.94166 -10.77831 -10.49499 -10.26110 -8.82478 -8.07721 -6.15127 1.67888 1.71198 1.93595 2.73460 3.25854 3.53898 3.97718 4.02724 4.14343 4.33117 4.40047 4.53299 4.60500 4.67285 4.73228 4.76117 4.83982 4.87582 4.93981 4.98228 5.00440 5.04672 5.08948 5.20728 5.23105 5.30256 5.31380 5.38023 5.41005 5.47746 5.59581 5.66740 5.73078 5.85134 5.95474 6.12993 6.57962 6.77825 7.04998 7.60844 9.02647 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.012109 C = 0.010418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.236424 B = 2311.719831 C = 2686.930280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 N -0.681 5.681 4 C 0.209 3.791 5 C -0.485 4.485 6 H 0.034 0.966 7 C 0.018 3.982 8 N -0.961 5.961 9 Si 1.013 2.987 10 H -0.276 1.276 11 H -0.383 1.383 12 H -0.253 1.253 13 C -0.123 4.123 14 C -0.094 4.094 15 C -0.060 4.060 16 C -0.134 4.134 17 C -0.135 4.135 18 C -0.092 4.092 19 C -0.105 4.105 20 H 0.066 0.934 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.339 0.661 26 H 0.253 0.747 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 4.334 -14.192 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 N -0.314 5.314 4 C 0.119 3.881 5 C -0.523 4.523 6 H 0.052 0.948 7 C -0.178 4.178 8 N -0.602 5.602 9 Si 0.854 3.146 10 H -0.203 1.203 11 H -0.322 1.322 12 H -0.178 1.178 13 C -0.161 4.161 14 C -0.132 4.132 15 C -0.060 4.060 16 C -0.191 4.191 17 C -0.193 4.193 18 C -0.130 4.130 19 C -0.143 4.143 20 H 0.085 0.915 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.159 0.841 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.126 4.325 -13.407 14.132 hybrid contribution -0.240 -0.247 0.341 0.484 sum -1.366 4.078 -13.066 13.755 Atomic orbital electron populations 1.21906 0.94452 1.02122 1.02162 1.21793 0.95100 0.89950 1.00218 1.59997 1.09152 1.13290 1.49004 1.18937 0.83208 0.92941 0.92994 1.20953 1.07794 1.31919 0.91623 0.94798 1.25858 1.00472 0.96429 0.95086 1.70162 1.43965 1.44815 1.01301 0.84606 0.80031 0.80268 0.69705 1.20304 1.32167 1.17836 1.22017 0.96555 0.99621 0.97954 1.21417 0.95562 0.96286 0.99907 1.20470 0.95458 0.94641 0.95419 1.21885 1.00970 1.00429 0.95864 1.21813 0.94398 1.01929 1.01135 1.21393 0.95439 0.98777 0.97439 1.21783 0.96053 0.96729 0.99770 0.91504 0.93584 0.90868 0.93978 0.93906 0.84138 0.93895 0.94009 0.91530 0.92093 0.94679 0.92106 0.92063 0.92436 0.94479 0.91743 0.91797 0.92110 0.94504 0.91892 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.05 71.98 0.72 -3.90 16 2 C 0.06 2.22 4.67 86.30 0.40 2.62 16 3 N -0.68 -26.73 2.03 -473.90 -0.96 -27.69 16 4 C 0.21 8.74 0.32 2.78 0.00 8.74 16 5 C -0.48 -26.34 6.25 25.60 0.16 -26.18 16 6 H 0.03 2.09 6.32 -2.91 -0.02 2.07 16 7 C 0.02 1.04 4.72 84.65 0.40 1.44 16 8 N -0.96 -62.15 13.96 21.45 0.30 -61.85 16 9 Si 1.01 51.80 23.39 68.60 1.60 53.40 16 10 H -0.28 -13.33 4.91 99.48 0.49 -12.84 16 11 H -0.38 -21.45 7.11 99.48 0.71 -20.75 16 12 H -0.25 -11.83 5.10 99.48 0.51 -11.32 16 13 C -0.12 -4.41 4.07 30.59 0.12 -4.29 16 14 C -0.09 -3.26 4.51 30.59 0.14 -3.12 16 15 C -0.06 -1.82 0.77 -52.18 -0.04 -1.86 16 16 C -0.13 -3.27 7.78 71.98 0.56 -2.71 16 17 C -0.14 -3.64 8.47 71.98 0.61 -3.03 16 18 C -0.09 -3.36 4.51 30.61 0.14 -3.23 16 19 C -0.11 -4.06 4.36 30.61 0.13 -3.92 16 20 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.05 1.59 6.35 -2.38 -0.02 1.58 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.48 6.05 -2.39 -0.01 1.47 16 24 H 0.04 2.03 6.46 -2.39 -0.02 2.01 16 25 H 0.34 11.08 8.63 -89.69 -0.77 10.31 16 26 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 27 H 0.04 1.60 6.27 -2.39 -0.01 1.59 16 28 H 0.07 2.02 6.43 -2.39 -0.02 2.01 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.03 1.48 6.30 -2.38 -0.02 1.47 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.43 4.81 -2.39 -0.01 1.42 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.04 1.62 7.21 -2.39 -0.02 1.61 16 39 H 0.06 2.04 6.43 -2.38 -0.02 2.02 16 40 H 0.04 1.71 5.47 -2.38 -0.01 1.69 16 Total: -1.00 -66.26 275.28 4.11 -62.15 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.18 Total: 13.44 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 3.35 Total: -39.44 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -0.66 Total: -89.54 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 1.60 Total: 53.40 kcal Total: -66.26 4.11 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.174 kcal (2) G-P(sol) polarization free energy of solvation -66.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds