Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47367 * 2 1 4 4 C 1.53001 * 109.47070 * 120.00205 * 2 1 3 5 5 N 1.46906 * 109.47263 * 58.65885 * 4 2 1 6 6 C 1.46898 * 110.99922 * 195.56197 * 5 4 2 7 7 H 1.09000 * 109.46735 * 299.99712 * 6 5 4 8 8 C 1.52996 * 109.47489 * 60.00050 * 6 5 4 9 9 C 1.50703 * 109.47039 * 180.02562 * 6 5 4 10 10 H 1.08001 * 119.99709 * 359.97438 * 9 6 5 11 11 C 1.37870 * 120.00020 * 180.27796 * 9 6 5 12 12 N 1.31517 * 120.00365 * 179.72378 * 11 9 6 13 13 Si 1.86805 * 120.00154 * 359.71856 * 11 9 6 14 14 H 1.48492 * 109.46950 * 90.00362 * 13 11 9 15 15 H 1.48503 * 109.47023 * 210.00494 * 13 11 9 16 16 H 1.48500 * 109.46798 * 330.00044 * 13 11 9 17 17 C 1.46901 * 110.99964 * 71.60648 * 5 4 2 18 18 C 1.53785 * 113.61377 * 15.34771 * 17 5 4 19 19 C 1.53778 * 87.07987 * 220.02103 * 18 17 5 20 20 C 1.53778 * 113.61237 * 277.85062 * 17 5 4 21 21 H 1.09002 * 109.46630 * 300.00443 * 1 2 3 22 22 H 1.09002 * 109.46930 * 59.99740 * 1 2 3 23 23 H 1.08996 * 109.47306 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46630 * 239.99557 * 2 1 3 25 25 H 1.09005 * 109.46840 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.46972 * 300.00011 * 3 2 1 27 27 H 1.08995 * 109.46983 * 60.00029 * 3 2 1 28 28 H 1.08995 * 109.46901 * 298.66065 * 4 2 1 29 29 H 1.08996 * 109.47419 * 178.65693 * 4 2 1 30 30 H 1.09001 * 109.47351 * 180.02562 * 8 6 5 31 31 H 1.09006 * 109.46722 * 300.00107 * 8 6 5 32 32 H 1.09007 * 109.47104 * 59.99496 * 8 6 5 33 33 H 0.96996 * 120.00798 * 179.97438 * 12 11 9 34 34 H 1.08992 * 112.84935 * 146.65691 * 17 5 4 35 35 H 1.08999 * 113.61416 * 334.56556 * 18 17 5 36 36 H 1.09000 * 113.61284 * 105.47123 * 18 17 5 37 37 H 1.09006 * 113.61320 * 270.88478 * 19 18 17 38 38 H 1.08995 * 113.61708 * 139.98314 * 19 18 17 39 39 H 1.09001 * 113.61721 * 254.52773 * 20 17 5 40 40 H 1.08996 * 113.62020 * 25.34894 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5241 -2.0967 1.2655 6 6 1.6741 -2.6994 2.5967 7 1 2.7291 -2.7187 2.8700 8 6 0.8966 -1.8717 3.6220 9 6 1.1357 -4.1069 2.5744 10 1 0.7230 -4.5127 1.6626 11 6 1.1643 -4.8741 3.7195 12 7 0.6895 -6.1004 3.7015 13 14 1.8776 -4.1719 5.2968 14 1 0.8022 -3.5015 6.0708 15 1 2.4606 -5.2703 6.1084 16 1 2.9370 -3.1857 4.9648 17 6 2.1803 -2.9173 0.2390 18 6 3.4636 -2.2862 -0.3266 19 6 3.0121 -2.7951 -1.7058 20 6 1.5735 -2.7502 -1.1641 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4423 -0.0005 26 1 1.6768 1.9562 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 1.6964 -0.1938 2.1390 29 1 3.1297 -0.7422 1.2373 30 1 1.0083 -2.3187 4.6098 31 1 1.2864 -0.8539 3.6380 32 1 -0.1585 -1.8524 3.3486 33 1 0.7100 -6.6404 4.5070 34 1 2.3004 -3.9575 0.5416 35 1 3.4868 -1.1993 -0.2485 36 1 4.3778 -2.7573 0.0347 37 1 3.3609 -3.8020 -1.9354 38 1 3.1966 -2.0876 -2.5141 39 1 0.9618 -3.5957 -1.4789 40 1 1.0787 -1.7907 -1.3144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = 35.999140 kcal Electronic energy + Delta-G solvation = -17096.754280 eV Core-core repulsion = 14719.890686 eV Total energy + Delta-G solvation = -2376.863594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73200 -35.49736 -34.63555 -32.05407 -29.35805 -26.99296 -26.42893 -24.96333 -24.15469 -23.20369 -19.98868 -19.38873 -18.69219 -16.58162 -15.94053 -14.96809 -14.78194 -14.18714 -13.73358 -13.64063 -13.20794 -12.75472 -12.32817 -12.11912 -12.01294 -11.90404 -11.66881 -11.55449 -11.01397 -10.94877 -10.73019 -10.65179 -10.47736 -10.23273 -10.10839 -9.85330 -9.65019 -9.53587 -9.34669 -8.94105 -8.54220 -7.19944 -6.05332 -4.03012 3.27544 3.37522 3.39535 4.41158 4.73258 5.17045 5.19999 5.20776 5.26323 5.30870 5.41481 5.56985 5.67998 5.83025 5.95811 5.98178 6.05558 6.11760 6.14679 6.19119 6.28211 6.33091 6.39702 6.44034 6.46879 6.50164 6.53117 6.59567 6.75855 6.77202 6.86754 6.91147 7.11798 7.34503 7.65266 8.07564 8.19326 8.70154 9.02255 9.57468 11.07511 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.009761 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.573957 B = 2868.010514 C = 3342.422655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.146 4.146 4 C 0.047 3.953 5 N -0.508 5.508 6 C 0.181 3.819 7 H -0.004 1.004 8 C -0.146 4.146 9 C -0.503 4.503 10 H 0.083 0.917 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.886 3.114 14 H -0.279 1.279 15 H -0.298 1.298 16 H -0.270 1.270 17 C 0.077 3.923 18 C -0.186 4.186 19 C -0.141 4.141 20 C -0.144 4.144 21 H 0.046 0.954 22 H 0.037 0.963 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.263 0.737 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 11.312 -7.330 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.204 4.204 4 C -0.082 4.082 5 N -0.230 5.230 6 C 0.074 3.926 7 H 0.013 0.987 8 C -0.203 4.203 9 C -0.541 4.541 10 H 0.101 0.899 11 C -0.132 4.132 12 N -0.538 5.538 13 Si 0.717 3.283 14 H -0.206 1.206 15 H -0.226 1.226 16 H -0.195 1.195 17 C -0.032 4.032 18 C -0.225 4.225 19 C -0.179 4.179 20 C -0.182 4.182 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.931 11.154 -7.294 13.646 hybrid contribution 1.202 0.243 1.238 1.743 sum 4.134 11.398 -6.056 13.552 Atomic orbital electron populations 1.21714 0.94775 1.03066 0.99794 1.21473 0.96872 0.94742 0.99290 1.21838 1.00404 0.96913 1.01262 1.22351 0.96785 0.91367 0.97658 1.61913 1.55108 1.00001 1.06008 1.19666 0.93786 0.94417 0.84766 0.98686 1.22231 1.01962 0.97333 0.98788 1.20990 1.39921 0.94701 0.98463 0.89911 1.24922 0.94955 0.94783 0.98535 1.69881 1.46444 1.08687 1.28832 0.86887 0.79593 0.77796 0.84030 1.20641 1.22617 1.19498 1.23194 0.90429 0.99172 0.90392 1.23852 0.99617 1.01772 0.97253 1.22675 0.98139 1.00695 0.96369 1.23413 0.95562 1.02366 0.96833 0.93501 0.94415 0.90600 0.90053 0.93326 0.93094 0.93009 0.91235 0.94998 0.94219 0.95225 0.92099 0.92693 0.86842 0.89006 0.92546 0.90771 0.92407 0.92146 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.34 37.16 0.31 -1.65 16 2 C -0.11 -1.49 1.82 -90.62 -0.16 -1.65 16 3 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 4 C 0.05 0.79 3.83 -3.82 -0.01 0.77 16 5 N -0.51 -10.22 3.60 -219.14 -0.79 -11.01 16 6 C 0.18 4.27 1.65 -68.87 -0.11 4.16 16 7 H 0.00 -0.11 7.21 -51.93 -0.37 -0.48 16 8 C -0.15 -3.22 8.49 37.16 0.32 -2.91 16 9 C -0.50 -13.89 8.07 -34.44 -0.28 -14.17 16 10 H 0.08 2.49 7.19 -52.49 -0.38 2.11 16 11 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 12 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 13 Si 0.89 22.09 24.37 -169.99 -4.14 17.95 16 14 H -0.28 -6.81 6.86 56.52 0.39 -6.43 16 15 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 17 C 0.08 1.48 3.50 -66.90 -0.23 1.24 16 18 C -0.19 -2.98 6.37 -25.92 -0.17 -3.14 16 19 C -0.14 -2.02 7.91 -25.92 -0.21 -2.22 16 20 C -0.14 -2.33 7.25 -25.92 -0.19 -2.52 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 1.26 6.96 -51.93 -0.36 0.90 16 24 H 0.08 1.16 3.94 -51.93 -0.20 0.95 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.20 5.64 -51.93 -0.29 0.90 16 29 H 0.03 0.54 5.86 -51.93 -0.30 0.24 16 30 H 0.04 0.91 3.25 -51.93 -0.17 0.74 16 31 H 0.03 0.57 6.10 -51.93 -0.32 0.25 16 32 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.11 2.54 6.31 -51.93 -0.33 2.21 16 35 H 0.09 1.39 4.22 -51.93 -0.22 1.17 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.41 4.02 -51.93 -0.21 1.20 16 LS Contribution 284.71 15.07 4.29 4.29 Total: -1.00 -28.63 284.71 -6.92 -35.56 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.56 Total: 1.39 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.49 Total: -21.58 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.02 Total: -37.61 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.63 -6.92 -35.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.555 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds