Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47367 * 2 1 4 4 C 1.53001 * 109.47070 * 120.00205 * 2 1 3 5 5 N 1.46906 * 109.47263 * 58.65885 * 4 2 1 6 6 C 1.46898 * 110.99922 * 195.56197 * 5 4 2 7 7 H 1.09000 * 109.46735 * 299.99712 * 6 5 4 8 8 C 1.52996 * 109.47489 * 60.00050 * 6 5 4 9 9 C 1.50703 * 109.47039 * 180.02562 * 6 5 4 10 10 H 1.08001 * 119.99709 * 359.97438 * 9 6 5 11 11 C 1.37870 * 120.00020 * 180.27796 * 9 6 5 12 12 N 1.31517 * 120.00365 * 179.72378 * 11 9 6 13 13 Si 1.86805 * 120.00154 * 359.71856 * 11 9 6 14 14 H 1.48492 * 109.46950 * 90.00362 * 13 11 9 15 15 H 1.48503 * 109.47023 * 210.00494 * 13 11 9 16 16 H 1.48500 * 109.46798 * 330.00044 * 13 11 9 17 17 C 1.46901 * 110.99964 * 71.60648 * 5 4 2 18 18 C 1.53785 * 113.61377 * 15.34771 * 17 5 4 19 19 C 1.53778 * 87.07987 * 220.02103 * 18 17 5 20 20 C 1.53778 * 113.61237 * 277.85062 * 17 5 4 21 21 H 1.09002 * 109.46630 * 300.00443 * 1 2 3 22 22 H 1.09002 * 109.46930 * 59.99740 * 1 2 3 23 23 H 1.08996 * 109.47306 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46630 * 239.99557 * 2 1 3 25 25 H 1.09005 * 109.46840 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.46972 * 300.00011 * 3 2 1 27 27 H 1.08995 * 109.46983 * 60.00029 * 3 2 1 28 28 H 1.08995 * 109.46901 * 298.66065 * 4 2 1 29 29 H 1.08996 * 109.47419 * 178.65693 * 4 2 1 30 30 H 1.09001 * 109.47351 * 180.02562 * 8 6 5 31 31 H 1.09006 * 109.46722 * 300.00107 * 8 6 5 32 32 H 1.09007 * 109.47104 * 59.99496 * 8 6 5 33 33 H 0.96996 * 120.00798 * 179.97438 * 12 11 9 34 34 H 1.08992 * 112.84935 * 146.65691 * 17 5 4 35 35 H 1.08999 * 113.61416 * 334.56556 * 18 17 5 36 36 H 1.09000 * 113.61284 * 105.47123 * 18 17 5 37 37 H 1.09006 * 113.61320 * 270.88478 * 19 18 17 38 38 H 1.08995 * 113.61708 * 139.98314 * 19 18 17 39 39 H 1.09001 * 113.61721 * 254.52773 * 20 17 5 40 40 H 1.08996 * 113.62020 * 25.34894 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5241 -2.0967 1.2655 6 6 1.6741 -2.6994 2.5967 7 1 2.7291 -2.7187 2.8700 8 6 0.8966 -1.8717 3.6220 9 6 1.1357 -4.1069 2.5744 10 1 0.7230 -4.5127 1.6626 11 6 1.1643 -4.8741 3.7195 12 7 0.6895 -6.1004 3.7015 13 14 1.8776 -4.1719 5.2968 14 1 0.8022 -3.5015 6.0708 15 1 2.4606 -5.2703 6.1084 16 1 2.9370 -3.1857 4.9648 17 6 2.1803 -2.9173 0.2390 18 6 3.4636 -2.2862 -0.3266 19 6 3.0121 -2.7951 -1.7058 20 6 1.5735 -2.7502 -1.1641 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4423 -0.0005 26 1 1.6768 1.9562 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 1.6964 -0.1938 2.1390 29 1 3.1297 -0.7422 1.2373 30 1 1.0083 -2.3187 4.6098 31 1 1.2864 -0.8539 3.6380 32 1 -0.1585 -1.8524 3.3486 33 1 0.7100 -6.6404 4.5070 34 1 2.3004 -3.9575 0.5416 35 1 3.4868 -1.1993 -0.2485 36 1 4.3778 -2.7573 0.0347 37 1 3.3609 -3.8020 -1.9354 38 1 3.1966 -2.0876 -2.5141 39 1 0.9618 -3.5957 -1.4789 40 1 1.0787 -1.7907 -1.3144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = 18.326035 kcal Electronic energy + Delta-G solvation = -17097.520643 eV Core-core repulsion = 14719.890686 eV Total energy + Delta-G solvation = -2377.629957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14449 -37.00496 -36.07476 -34.07053 -31.06912 -28.20280 -27.89254 -26.48176 -25.74309 -24.63668 -21.64014 -20.73795 -20.11503 -18.64524 -17.49558 -16.51801 -16.41945 -15.56798 -15.34827 -15.01594 -14.70063 -14.47370 -13.81534 -13.61232 -13.49793 -13.23803 -12.98014 -12.86858 -12.73156 -12.48583 -12.21296 -12.16979 -11.82650 -11.70714 -11.57354 -11.40464 -11.23253 -11.05204 -10.91321 -10.75417 -10.64896 -8.77769 -8.28137 -6.29600 1.27974 1.32846 1.42856 2.30818 3.05522 3.25394 3.86064 3.90870 4.02063 4.13023 4.19607 4.29337 4.43394 4.50535 4.65702 4.69307 4.73757 4.78736 4.84478 4.91826 4.94841 4.97590 5.03049 5.11003 5.11816 5.19068 5.21647 5.27647 5.35332 5.39054 5.49377 5.56547 5.67718 5.69210 5.76254 6.13808 6.51157 6.77162 6.83337 7.34906 8.88473 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.009761 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.573957 B = 2868.010514 C = 3342.422655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.141 4.141 4 C 0.044 3.956 5 N -0.516 5.516 6 C 0.184 3.816 7 H -0.017 1.017 8 C -0.141 4.141 9 C -0.499 4.499 10 H 0.040 0.960 11 C 0.011 3.989 12 N -0.949 5.949 13 Si 0.948 3.052 14 H -0.266 1.266 15 H -0.299 1.299 16 H -0.254 1.254 17 C 0.057 3.943 18 C -0.175 4.175 19 C -0.125 4.125 20 C -0.138 4.138 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 14.406 -7.874 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.199 4.199 4 C -0.083 4.083 5 N -0.238 5.238 6 C 0.076 3.924 7 H 0.001 0.999 8 C -0.198 4.198 9 C -0.537 4.537 10 H 0.058 0.942 11 C -0.186 4.186 12 N -0.590 5.590 13 Si 0.776 3.224 14 H -0.192 1.192 15 H -0.227 1.227 16 H -0.179 1.179 17 C -0.052 4.052 18 C -0.214 4.214 19 C -0.163 4.163 20 C -0.176 4.176 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.007 14.273 -7.859 16.779 hybrid contribution 0.829 -0.760 1.308 1.725 sum 4.836 13.513 -6.551 15.777 Atomic orbital electron populations 1.21672 0.95089 1.01494 1.00848 1.21425 0.96527 0.96160 0.97651 1.21791 1.00956 0.94868 1.02275 1.22496 0.97080 0.89385 0.99351 1.61923 1.56107 1.01549 1.04207 1.19475 0.92748 0.92659 0.87501 0.99943 1.22123 1.01400 0.98816 0.97460 1.21207 1.38716 0.97037 0.96747 0.94176 1.25755 0.95605 0.95004 1.02229 1.70034 1.48685 1.10365 1.29909 0.85865 0.79485 0.77328 0.79714 1.19212 1.22738 1.17857 1.23173 0.93483 0.97039 0.91494 1.23798 0.97490 1.02440 0.97661 1.22619 0.95772 1.01547 0.96336 1.23398 0.96875 1.02522 0.94790 0.93648 0.92214 0.93447 0.89803 0.92451 0.91377 0.92784 0.91285 0.94545 0.95004 0.91863 0.92761 0.92661 0.91548 0.87310 0.93056 0.90747 0.89273 0.93504 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.34 71.98 0.60 -2.93 16 2 C -0.10 -2.49 1.82 -10.79 -0.02 -2.51 16 3 C -0.14 -2.73 9.19 71.98 0.66 -2.07 16 4 C 0.04 1.40 3.83 86.30 0.33 1.73 16 5 N -0.52 -20.67 3.60 -847.21 -3.05 -23.72 16 6 C 0.18 8.74 1.65 44.17 0.07 8.82 16 7 H -0.02 -0.84 7.21 -2.39 -0.02 -0.85 16 8 C -0.14 -6.03 8.49 71.98 0.61 -5.41 16 9 C -0.50 -28.76 8.07 25.60 0.21 -28.55 16 10 H 0.04 2.59 7.19 -2.91 -0.02 2.57 16 11 C 0.01 0.64 5.45 84.65 0.46 1.10 16 12 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 13 Si 0.95 45.91 24.37 68.60 1.67 47.58 16 14 H -0.27 -12.24 6.86 99.48 0.68 -11.56 16 15 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 16 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 17 C 0.06 2.22 3.50 45.44 0.16 2.38 16 18 C -0.18 -5.32 6.37 31.12 0.20 -5.12 16 19 C -0.12 -3.31 7.91 31.12 0.25 -3.06 16 20 C -0.14 -4.40 7.25 31.12 0.23 -4.17 16 21 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.52 6.96 -2.39 -0.02 1.50 16 24 H 0.08 2.08 3.94 -2.39 -0.01 2.07 16 25 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 2.18 5.64 -2.39 -0.01 2.17 16 29 H 0.04 1.13 5.86 -2.39 -0.01 1.11 16 30 H 0.03 1.40 3.25 -2.39 -0.01 1.39 16 31 H 0.06 2.26 6.10 -2.38 -0.01 2.25 16 32 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.07 3.18 6.31 -2.39 -0.02 3.16 16 35 H 0.11 2.94 4.22 -2.39 -0.01 2.93 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.97 8.14 -2.38 -0.02 1.96 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 3.06 4.02 -2.39 -0.01 3.05 16 Total: -1.00 -64.39 284.71 3.60 -60.79 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.93 Total: 14.97 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.75 Total: -39.79 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.75 Total: -83.55 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -64.39 3.60 -60.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.117 kcal (2) G-P(sol) polarization free energy of solvation -64.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds