Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47746 * 2 1 4 4 C 1.36938 * 119.99984 * 265.97625 * 3 2 1 5 5 H 1.07997 * 120.00566 * 146.05835 * 4 3 2 6 6 C 1.38822 * 119.99679 * 326.05599 * 4 3 2 7 7 N 1.31621 * 119.99652 * 337.72224 * 6 4 3 8 8 Si 1.86794 * 119.99998 * 157.72278 * 6 4 3 9 9 H 1.48501 * 109.47127 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46874 * 119.99836 * 8 6 4 11 11 H 1.48493 * 109.47465 * 239.99843 * 8 6 4 12 12 C 1.46499 * 120.00093 * 85.69144 * 3 2 1 13 13 C 1.53002 * 109.47257 * 240.00226 * 12 3 2 14 14 C 1.52995 * 109.47221 * 179.97438 * 13 12 3 15 15 C 1.53006 * 109.47003 * 60.00550 * 14 13 12 16 16 C 1.52995 * 109.47003 * 179.97438 * 15 14 13 17 17 C 1.52991 * 109.47115 * 59.99797 * 15 14 13 18 18 C 1.53002 * 109.46683 * 299.99779 * 15 14 13 19 19 C 1.52999 * 109.46810 * 120.00635 * 12 3 2 20 20 H 1.08996 * 109.47521 * 300.00835 * 1 2 3 21 21 H 1.09004 * 109.46882 * 60.00386 * 1 2 3 22 22 H 1.08995 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47158 * 239.99035 * 2 1 3 24 24 H 1.09000 * 109.46714 * 120.00102 * 2 1 3 25 25 H 0.97002 * 119.99317 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.46983 * 0.02562 * 12 3 2 27 27 H 1.08994 * 109.47284 * 300.00638 * 13 12 3 28 28 H 1.09003 * 109.46728 * 60.00119 * 13 12 3 29 29 H 1.08994 * 109.47615 * 300.00560 * 14 13 12 30 30 H 1.08998 * 109.47166 * 179.97438 * 14 13 12 31 31 H 1.09003 * 109.47070 * 179.97438 * 16 15 14 32 32 H 1.08993 * 109.47421 * 299.99776 * 16 15 14 33 33 H 1.09004 * 109.47593 * 60.00125 * 16 15 14 34 34 H 1.09004 * 109.47149 * 300.00069 * 17 15 14 35 35 H 1.08998 * 109.47443 * 60.00381 * 17 15 14 36 36 H 1.08997 * 109.47119 * 180.02562 * 17 15 14 37 37 H 1.09004 * 109.47538 * 300.00088 * 18 15 14 38 38 H 1.09003 * 109.46728 * 180.02562 * 18 15 14 39 39 H 1.08996 * 109.47261 * 299.99430 * 19 12 3 40 40 H 1.08994 * 109.47372 * 60.00208 * 19 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3252 1.9989 -1.1830 5 1 2.1535 3.0587 -1.2992 6 6 2.8570 1.2627 -2.2329 7 7 3.4683 0.1219 -1.9934 8 14 2.7049 1.8910 -3.9854 9 1 1.9801 3.1871 -3.9854 10 1 4.0600 2.0823 -4.5620 11 1 1.9545 0.9036 -4.8020 12 6 2.1728 2.1035 1.2651 13 6 1.2859 3.3502 1.2521 14 6 1.4467 4.1042 2.5736 15 6 2.9086 4.5203 2.7488 16 6 3.0692 5.2749 4.0700 17 6 3.3227 5.4288 1.5895 18 6 3.7955 3.2736 2.7618 19 6 3.6348 2.5195 1.4396 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5140 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 3.8402 -0.3923 -2.7271 26 1 1.8784 1.4563 2.0912 27 1 1.5806 3.9971 0.4260 28 1 0.2444 3.0537 1.1277 29 1 1.1517 3.4571 3.3995 30 1 0.8152 4.9926 2.5642 31 1 4.1108 5.5709 4.1950 32 1 2.4375 6.1630 4.0603 33 1 2.7741 4.6280 4.8962 34 1 3.2081 4.8915 0.6481 35 1 2.6909 6.3169 1.5803 36 1 4.3643 5.7248 1.7141 37 1 3.5005 2.6263 3.5877 38 1 4.8370 3.5700 2.8870 39 1 4.2666 1.6315 1.4490 40 1 3.9295 3.1666 0.6135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261117767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = -11.524111 kcal Electronic energy + Delta-G solvation = -17009.676280 eV Core-core repulsion = 14630.751923 eV Total energy + Delta-G solvation = -2378.924357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04197 -35.66004 -32.14080 -30.96660 -30.11473 -28.43533 -26.99957 -25.28914 -23.72178 -21.94885 -20.86202 -19.67419 -17.95783 -16.11831 -15.07903 -14.55803 -14.32362 -14.04729 -13.60301 -13.48311 -12.99872 -12.54576 -12.19368 -11.85086 -11.81571 -11.62236 -11.43964 -11.34335 -11.08520 -10.87818 -10.79471 -10.57890 -10.43866 -10.31811 -10.05999 -9.99323 -9.70485 -9.36535 -9.31650 -9.12923 -8.35939 -6.48097 -5.68925 -3.21015 3.39441 3.48476 3.50636 4.54829 5.09797 5.10668 5.19797 5.40566 5.58904 5.71570 5.79900 5.86770 6.00444 6.03415 6.08949 6.13353 6.18854 6.22855 6.34818 6.38056 6.46507 6.52390 6.53675 6.59069 6.65994 6.66544 6.74471 6.86934 6.95827 7.00881 7.06745 7.31403 7.39068 7.44773 7.84330 7.92038 8.60861 9.30156 9.95516 10.51780 11.31606 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.009162 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.012232 B = 3055.271613 C = 3449.706108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 N -0.583 5.583 4 C -0.242 4.242 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.890 5.890 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.292 1.292 11 H -0.290 1.290 12 C 0.178 3.822 13 C -0.127 4.127 14 C -0.103 4.103 15 C -0.064 4.064 16 C -0.139 4.139 17 C -0.144 4.144 18 C -0.105 4.105 19 C -0.121 4.121 20 H 0.031 0.969 21 H 0.047 0.953 22 H 0.031 0.969 23 H 0.099 0.901 24 H 0.017 0.983 25 H 0.251 0.749 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 6.285 8.798 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.303 5.303 4 C -0.372 4.372 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.216 1.216 12 C 0.071 3.929 13 C -0.166 4.166 14 C -0.141 4.141 15 C -0.064 4.064 16 C -0.196 4.196 17 C -0.201 4.201 18 C -0.144 4.144 19 C -0.160 4.160 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.116 0.884 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.853 6.155 8.678 10.799 hybrid contribution -0.075 0.260 -0.951 0.989 sum -1.928 6.416 7.727 10.227 Atomic orbital electron populations 1.22349 1.01199 0.98462 1.00248 1.20952 0.89587 0.86691 1.01601 1.43949 1.74151 1.11185 1.00980 1.18994 1.34832 0.93846 0.89509 0.92165 1.25047 0.97552 0.98024 0.98848 1.70004 1.37048 1.16055 1.30297 0.86408 0.77327 0.78395 0.85788 1.20248 1.21898 1.21644 1.20321 0.92171 0.91662 0.88727 1.21995 0.99873 0.98631 0.96087 1.21570 0.94865 0.99132 0.98566 1.20508 0.95893 0.95377 0.94578 1.21872 1.00951 0.99673 0.97145 1.21963 0.99993 0.98696 0.99455 1.21628 0.98063 0.95760 0.98902 1.21945 0.99068 0.99492 0.95505 0.94992 0.93398 0.94961 0.88383 0.96475 0.93866 0.93923 0.91580 0.93158 0.92883 0.93170 0.93176 0.93249 0.93140 0.90905 0.93634 0.93488 0.93019 0.93160 0.92805 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 37.16 0.38 -3.00 16 2 C 0.14 3.31 5.92 -4.05 -0.02 3.28 16 3 N -0.58 -14.29 2.39 -165.67 -0.40 -14.68 16 4 C -0.24 -6.45 8.25 -15.06 -0.12 -6.58 16 5 H 0.06 1.62 6.82 -52.49 -0.36 1.26 16 6 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 7 N -0.89 -25.60 11.32 55.49 0.63 -24.97 16 8 Si 0.89 21.68 29.61 -169.99 -5.03 16.65 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 C 0.18 3.71 2.63 -67.93 -0.18 3.54 16 13 C -0.13 -2.35 4.89 -26.73 -0.13 -2.48 16 14 C -0.10 -1.57 4.73 -26.73 -0.13 -1.70 16 15 C -0.06 -0.92 0.77 -154.51 -0.12 -1.04 16 16 C -0.14 -1.69 8.47 37.16 0.31 -1.38 16 17 C -0.14 -2.14 7.78 37.15 0.29 -1.85 16 18 C -0.11 -1.68 4.73 -26.70 -0.13 -1.81 16 19 C -0.12 -2.41 4.90 -26.70 -0.13 -2.54 16 20 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.10 2.66 5.32 -51.93 -0.28 2.38 16 24 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 25 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.04 0.88 7.85 -51.93 -0.41 0.47 16 27 H 0.07 1.32 5.25 -51.93 -0.27 1.05 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.25 4.81 -51.93 -0.25 1.00 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.50 5.95 -51.93 -0.31 1.19 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -27.57 299.21 -7.70 -35.27 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.34 Total: -1.24 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.06 Total: -15.53 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.23 Total: -39.65 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.57 -7.70 -35.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.743 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds