Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47746 * 2 1 4 4 C 1.36938 * 119.99984 * 265.97625 * 3 2 1 5 5 H 1.07997 * 120.00566 * 146.05835 * 4 3 2 6 6 C 1.38822 * 119.99679 * 326.05599 * 4 3 2 7 7 N 1.31621 * 119.99652 * 337.72224 * 6 4 3 8 8 Si 1.86794 * 119.99998 * 157.72278 * 6 4 3 9 9 H 1.48501 * 109.47127 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46874 * 119.99836 * 8 6 4 11 11 H 1.48493 * 109.47465 * 239.99843 * 8 6 4 12 12 C 1.46499 * 120.00093 * 85.69144 * 3 2 1 13 13 C 1.53002 * 109.47257 * 240.00226 * 12 3 2 14 14 C 1.52995 * 109.47221 * 179.97438 * 13 12 3 15 15 C 1.53006 * 109.47003 * 60.00550 * 14 13 12 16 16 C 1.52995 * 109.47003 * 179.97438 * 15 14 13 17 17 C 1.52991 * 109.47115 * 59.99797 * 15 14 13 18 18 C 1.53002 * 109.46683 * 299.99779 * 15 14 13 19 19 C 1.52999 * 109.46810 * 120.00635 * 12 3 2 20 20 H 1.08996 * 109.47521 * 300.00835 * 1 2 3 21 21 H 1.09004 * 109.46882 * 60.00386 * 1 2 3 22 22 H 1.08995 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47158 * 239.99035 * 2 1 3 24 24 H 1.09000 * 109.46714 * 120.00102 * 2 1 3 25 25 H 0.97002 * 119.99317 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.46983 * 0.02562 * 12 3 2 27 27 H 1.08994 * 109.47284 * 300.00638 * 13 12 3 28 28 H 1.09003 * 109.46728 * 60.00119 * 13 12 3 29 29 H 1.08994 * 109.47615 * 300.00560 * 14 13 12 30 30 H 1.08998 * 109.47166 * 179.97438 * 14 13 12 31 31 H 1.09003 * 109.47070 * 179.97438 * 16 15 14 32 32 H 1.08993 * 109.47421 * 299.99776 * 16 15 14 33 33 H 1.09004 * 109.47593 * 60.00125 * 16 15 14 34 34 H 1.09004 * 109.47149 * 300.00069 * 17 15 14 35 35 H 1.08998 * 109.47443 * 60.00381 * 17 15 14 36 36 H 1.08997 * 109.47119 * 180.02562 * 17 15 14 37 37 H 1.09004 * 109.47538 * 300.00088 * 18 15 14 38 38 H 1.09003 * 109.46728 * 180.02562 * 18 15 14 39 39 H 1.08996 * 109.47261 * 299.99430 * 19 12 3 40 40 H 1.08994 * 109.47372 * 60.00208 * 19 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3252 1.9989 -1.1830 5 1 2.1535 3.0587 -1.2992 6 6 2.8570 1.2627 -2.2329 7 7 3.4683 0.1219 -1.9934 8 14 2.7049 1.8910 -3.9854 9 1 1.9801 3.1871 -3.9854 10 1 4.0600 2.0823 -4.5620 11 1 1.9545 0.9036 -4.8020 12 6 2.1728 2.1035 1.2651 13 6 1.2859 3.3502 1.2521 14 6 1.4467 4.1042 2.5736 15 6 2.9086 4.5203 2.7488 16 6 3.0692 5.2749 4.0700 17 6 3.3227 5.4288 1.5895 18 6 3.7955 3.2736 2.7618 19 6 3.6348 2.5195 1.4396 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5140 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 3.8402 -0.3923 -2.7271 26 1 1.8784 1.4563 2.0912 27 1 1.5806 3.9971 0.4260 28 1 0.2444 3.0537 1.1277 29 1 1.1517 3.4571 3.3995 30 1 0.8152 4.9926 2.5642 31 1 4.1108 5.5709 4.1950 32 1 2.4375 6.1630 4.0603 33 1 2.7741 4.6280 4.8962 34 1 3.2081 4.8915 0.6481 35 1 2.6909 6.3169 1.5803 36 1 4.3643 5.7248 1.7141 37 1 3.5005 2.6263 3.5877 38 1 4.8370 3.5700 2.8870 39 1 4.2666 1.6315 1.4490 40 1 3.9295 3.1666 0.6135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261117767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = -24.823995 kcal Electronic energy + Delta-G solvation = -17010.253006 eV Core-core repulsion = 14630.751923 eV Total energy + Delta-G solvation = -2379.501083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45163 -37.41327 -33.88980 -32.78327 -31.53824 -30.18467 -28.11076 -26.94443 -25.45446 -23.40090 -22.57530 -21.42504 -19.33581 -18.00313 -16.97357 -16.08786 -15.85029 -15.57318 -15.37006 -14.73947 -14.53142 -14.19939 -13.67437 -13.50661 -13.28503 -13.02470 -12.99217 -12.71836 -12.67775 -12.51609 -12.39595 -12.28256 -12.06854 -11.90064 -11.72940 -11.48154 -11.42929 -10.92723 -10.80568 -10.74476 -10.39086 -8.49637 -7.75751 -5.31081 1.43270 1.47112 1.56020 2.53905 3.29758 3.61433 3.89344 3.94123 4.16544 4.36184 4.51664 4.56285 4.60989 4.67532 4.73010 4.79835 4.88062 4.93303 4.94024 4.95507 5.03598 5.05657 5.14389 5.18726 5.22204 5.30305 5.31627 5.36760 5.48474 5.52708 5.59198 5.63199 5.73971 5.79031 5.84796 5.93012 6.53567 7.24502 7.98197 8.48163 9.21391 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.009162 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.012232 B = 3055.271613 C = 3449.706108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.236 4.236 5 H 0.055 0.945 6 C -0.047 4.047 7 N -0.922 5.922 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.295 1.295 11 H -0.291 1.291 12 C 0.173 3.827 13 C -0.116 4.116 14 C -0.097 4.097 15 C -0.062 4.062 16 C -0.133 4.133 17 C -0.142 4.142 18 C -0.098 4.098 19 C -0.112 4.112 20 H 0.045 0.955 21 H 0.032 0.968 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.018 0.982 25 H 0.247 0.753 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.022 0.978 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 7.796 10.460 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.008 3.992 3 N -0.318 5.318 4 C -0.367 4.367 5 H 0.073 0.927 6 C -0.242 4.242 7 N -0.568 5.568 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.222 1.222 11 H -0.218 1.218 12 C 0.067 3.933 13 C -0.155 4.155 14 C -0.135 4.135 15 C -0.062 4.062 16 C -0.190 4.190 17 C -0.199 4.199 18 C -0.136 4.136 19 C -0.151 4.151 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.737 7.686 10.359 13.186 hybrid contribution 0.207 -0.224 -1.428 1.460 sum -2.531 7.461 8.931 11.910 Atomic orbital electron populations 1.22140 0.98425 0.99998 1.00129 1.20900 0.91776 0.86407 1.00129 1.44195 1.74437 1.11445 1.01763 1.19120 1.33420 0.93629 0.90525 0.92722 1.25670 0.98066 0.98564 1.01937 1.70131 1.38553 1.17287 1.30788 0.85509 0.76907 0.78016 0.81899 1.19427 1.22207 1.21823 1.20522 0.93157 0.92426 0.87206 1.21832 0.98586 0.97365 0.97750 1.21539 0.95802 0.99600 0.96547 1.20510 0.94873 0.94730 0.96078 1.21797 1.01917 0.99929 0.95356 1.21930 1.00949 0.98975 0.98086 1.21571 0.99330 0.96281 0.96410 1.21793 0.97833 0.98159 0.97307 0.93577 0.94864 0.92616 0.91527 0.96334 0.94353 0.93442 0.93461 0.93782 0.91661 0.91286 0.92388 0.91919 0.92154 0.94084 0.92111 0.92721 0.91850 0.92157 0.95901 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 10.24 71.98 0.74 -5.25 16 2 C 0.13 6.51 5.92 86.38 0.51 7.02 16 3 N -0.60 -29.78 2.39 -678.05 -1.62 -31.41 16 4 C -0.24 -12.87 8.25 84.04 0.69 -12.18 16 5 H 0.06 3.00 6.82 -2.91 -0.02 2.98 16 6 C -0.05 -2.61 4.93 84.86 0.42 -2.19 16 7 N -0.92 -54.67 11.32 21.66 0.25 -54.43 16 8 Si 0.95 45.50 29.61 68.60 2.03 47.53 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 12 C 0.17 7.18 2.63 44.99 0.12 7.30 16 13 C -0.12 -4.20 4.89 30.59 0.15 -4.05 16 14 C -0.10 -2.67 4.73 30.59 0.14 -2.52 16 15 C -0.06 -1.63 0.77 -52.18 -0.04 -1.67 16 16 C -0.13 -2.66 8.47 71.98 0.61 -2.05 16 17 C -0.14 -3.97 7.78 71.98 0.56 -3.41 16 18 C -0.10 -2.95 4.73 30.61 0.14 -2.80 16 19 C -0.11 -4.51 4.90 30.61 0.15 -4.36 16 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.03 1.41 8.14 -2.38 -0.02 1.40 16 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 3.72 5.32 -2.39 -0.01 3.70 16 24 H 0.02 0.86 8.01 -2.39 -0.02 0.84 16 25 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 27 H 0.05 1.88 5.25 -2.39 -0.01 1.87 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.04 1.40 4.81 -2.38 -0.01 1.39 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.04 2.00 5.95 -2.39 -0.01 1.98 16 Total: -1.00 -60.13 299.21 5.82 -54.31 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.97 Total: 10.16 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.20 Total: -26.16 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -1.38 Total: -85.83 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -60.13 5.82 -54.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.484 kcal (2) G-P(sol) polarization free energy of solvation -60.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds