Wall clock time and date at job start Mon Mar 30 2020 03:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00067 * 2 1 4 4 C 1.46892 * 110.99991 * 123.95924 * 2 1 3 5 5 C 1.52996 * 109.47551 * 66.04728 * 4 2 1 6 6 C 1.52993 * 109.47738 * 173.51059 * 5 4 2 7 7 H 1.09007 * 109.47060 * 311.02740 * 6 5 4 8 8 C 1.50694 * 109.47659 * 191.02567 * 6 5 4 9 9 H 1.08002 * 119.99956 * 355.15938 * 8 6 5 10 10 C 1.37882 * 120.00407 * 175.16066 * 8 6 5 11 11 N 1.31506 * 119.99614 * 357.41412 * 10 8 6 12 12 Si 1.86796 * 119.99812 * 177.41574 * 10 8 6 13 13 H 1.48501 * 109.46847 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47158 * 299.99717 * 12 10 8 15 15 H 1.48496 * 109.47686 * 60.00079 * 12 10 8 16 16 C 1.52997 * 109.47224 * 71.02166 * 6 5 4 17 17 C 1.54269 * 110.03002 * 50.57006 * 16 6 5 18 18 C 1.54968 * 104.16199 * 217.13327 * 17 16 6 19 19 C 1.54890 * 102.77419 * 37.88694 * 18 17 16 20 20 C 1.53873 * 110.03629 * 293.35091 * 16 6 5 21 21 H 1.09000 * 109.47290 * 296.04715 * 1 2 3 22 22 H 1.09004 * 109.47033 * 56.03870 * 1 2 3 23 23 H 1.09000 * 109.47168 * 176.04322 * 1 2 3 24 24 H 1.09001 * 109.47030 * 183.95019 * 3 2 1 25 25 H 1.08993 * 109.47466 * 303.95697 * 3 2 1 26 26 H 1.09001 * 109.46934 * 63.95642 * 3 2 1 27 27 H 1.08998 * 109.47224 * 306.04232 * 4 2 1 28 28 H 1.09006 * 109.47269 * 186.04797 * 4 2 1 29 29 H 1.09005 * 109.47115 * 53.50478 * 5 4 2 30 30 H 1.09004 * 109.46685 * 293.51116 * 5 4 2 31 31 H 0.96996 * 120.00552 * 356.54054 * 11 10 8 32 32 H 1.09009 * 110.01988 * 171.95928 * 16 6 5 33 33 H 1.08998 * 110.48937 * 335.78143 * 17 16 6 34 34 H 1.09000 * 110.48615 * 98.43097 * 17 16 6 35 35 H 1.08998 * 110.72293 * 279.57951 * 18 17 16 36 36 H 1.08992 * 110.92613 * 156.29646 * 18 17 16 37 37 H 1.08998 * 110.48817 * 203.40316 * 19 18 17 38 38 H 1.09000 * 110.59884 * 80.81447 * 19 18 17 39 39 H 1.08992 * 110.03432 * 238.56783 * 20 16 6 40 40 H 1.08999 * 110.02929 * 359.95632 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1374 5 6 1.6315 -2.2426 0.9702 6 6 2.3145 -3.0637 2.0656 7 1 3.3700 -2.7960 2.1156 8 6 2.1829 -4.5312 1.7495 9 1 1.5978 -4.8502 0.8996 10 6 2.8094 -5.4668 2.5453 11 7 3.5632 -5.0766 3.5498 12 14 2.5874 -7.2884 2.1966 13 1 3.3588 -8.0799 3.1886 14 1 1.1479 -7.6396 2.2955 15 1 3.0787 -7.5942 0.8290 16 6 1.6499 -2.7704 3.4121 17 6 0.1193 -2.9186 3.2893 18 6 -0.4444 -1.7923 4.1921 19 6 0.5433 -0.6258 3.9413 20 6 1.9196 -1.3134 3.8269 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5741 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5898 1.9164 -0.8523 26 1 1.7044 1.8723 0.9233 27 1 1.5611 -0.3874 2.0627 28 1 3.0797 -0.6611 1.1755 29 1 1.9662 -2.5909 -0.0070 30 1 0.5507 -2.3615 1.0476 31 1 3.7191 -4.1312 3.7006 32 1 2.0312 -3.4518 4.1728 33 1 -0.1964 -2.7732 2.2562 34 1 -0.1998 -3.8955 3.6528 35 1 -0.4286 -2.0933 5.2395 36 1 -1.4535 -1.5165 3.8861 37 1 0.5330 0.0699 4.7804 38 1 0.2975 -0.1077 3.0144 39 1 2.4309 -1.2876 4.7891 40 1 2.5247 -0.8154 3.0693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:00 Heat of formation + Delta-G solvation = -0.144011 kcal Electronic energy + Delta-G solvation = -17054.839372 eV Core-core repulsion = 14676.408494 eV Total energy + Delta-G solvation = -2378.430878 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06919 -36.51302 -33.72676 -31.29013 -28.58894 -27.87907 -27.24166 -25.68737 -23.57353 -21.77080 -20.39891 -19.87507 -18.20350 -16.90421 -15.60954 -14.90443 -14.63488 -14.37301 -14.21864 -13.67883 -13.44391 -12.83113 -12.57221 -12.20981 -11.98056 -11.56932 -11.50884 -11.27407 -10.91676 -10.71734 -10.46231 -10.41082 -10.34194 -10.23699 -10.07563 -9.96484 -9.74144 -9.27901 -8.96741 -8.29606 -8.20208 -7.86372 -6.23509 -3.95267 3.48128 3.49041 3.67622 4.32713 4.60406 5.28720 5.33135 5.36809 5.37880 5.43848 5.50059 5.57635 5.68426 5.84664 5.93256 5.98689 6.06415 6.11279 6.18279 6.21382 6.28195 6.32463 6.46223 6.48886 6.56505 6.68552 6.71793 6.78997 6.97170 7.05858 7.12408 7.35429 7.40047 7.54608 7.69414 7.76203 8.35908 8.54606 8.97861 9.74909 11.12921 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.009151 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.264164 B = 3058.937931 C = 3516.109092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.026 3.974 4 C 0.024 3.976 5 C -0.100 4.100 6 C 0.042 3.958 7 H 0.017 0.983 8 C -0.585 4.585 9 H 0.046 0.954 10 C 0.019 3.981 11 N -0.916 5.916 12 Si 1.061 2.939 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.289 1.289 16 C -0.086 4.086 17 C -0.107 4.107 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.143 4.143 21 H 0.020 0.980 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.272 0.728 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 9.951 -2.019 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.123 4.123 4 C -0.102 4.102 5 C -0.137 4.137 6 C 0.023 3.977 7 H 0.035 0.965 8 C -0.623 4.623 9 H 0.064 0.936 10 C -0.184 4.184 11 N -0.553 5.553 12 Si 0.890 3.110 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.216 1.216 16 C -0.105 4.105 17 C -0.144 4.144 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.180 4.180 21 H 0.038 0.962 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.360 8.202 -1.902 9.981 hybrid contribution -0.647 1.944 0.200 2.058 sum -6.007 10.145 -1.702 11.912 Atomic orbital electron populations 1.22365 0.88135 1.02364 0.99409 1.62030 1.07499 1.12725 1.45248 1.22336 1.00596 0.89706 0.99648 1.23208 0.99474 0.96079 0.91419 1.21706 1.00387 0.91393 1.00256 1.18828 0.94057 0.95107 0.89667 0.96549 1.21938 1.34260 0.91218 1.14877 0.93559 1.25663 0.93736 1.05426 0.93599 1.70777 1.36314 1.19280 1.28904 0.83659 0.76081 0.75485 0.75770 1.20967 1.21624 1.21610 1.21889 0.94667 0.92967 1.00967 1.22417 0.96384 0.96704 0.98939 1.22539 0.97396 0.96580 0.99921 1.22443 0.96513 0.97343 0.99870 1.22797 0.96212 0.98417 1.00582 0.96151 0.92320 0.90997 0.91743 0.92080 0.96275 0.91390 0.91889 0.92747 0.92408 0.91663 0.90634 0.91347 0.92695 0.92434 0.92993 0.93167 0.92242 0.93525 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.32 60.06 0.56 0.92 16 2 N -0.55 -8.77 5.02 -251.27 -1.26 -10.03 16 3 C 0.03 0.34 9.57 60.07 0.57 0.91 16 4 C 0.02 0.43 3.38 -3.83 -0.01 0.41 16 5 C -0.10 -2.07 4.20 -26.74 -0.11 -2.18 16 6 C 0.04 1.02 1.28 -91.78 -0.12 0.90 16 7 H 0.02 0.44 7.58 -51.93 -0.39 0.04 16 8 C -0.58 -15.98 8.09 -34.44 -0.28 -16.26 16 9 H 0.05 1.28 7.75 -52.49 -0.41 0.87 16 10 C 0.02 0.54 5.25 -17.82 -0.09 0.45 16 11 N -0.92 -27.10 12.85 55.43 0.71 -26.39 16 12 Si 1.06 25.23 29.90 -169.99 -5.08 20.15 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 16 C -0.09 -1.89 2.32 -89.50 -0.21 -2.10 16 17 C -0.11 -2.15 5.79 -25.03 -0.14 -2.29 16 18 C -0.13 -2.10 6.91 -24.70 -0.17 -2.27 16 19 C -0.12 -1.99 6.38 -25.07 -0.16 -2.15 16 20 C -0.14 -2.66 5.59 -25.61 -0.14 -2.80 16 21 H 0.02 0.27 7.63 -51.93 -0.40 -0.12 16 22 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 23 H 0.07 1.08 6.62 -51.93 -0.34 0.73 16 24 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 25 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 1.16 2.47 -51.93 -0.13 1.04 16 28 H 0.06 1.16 7.76 -51.93 -0.40 0.76 16 29 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.06 1.18 4.00 -51.93 -0.21 0.97 16 31 H 0.27 7.97 5.92 -40.82 -0.24 7.73 16 32 H 0.08 1.93 6.04 -51.92 -0.31 1.62 16 33 H 0.07 1.37 5.06 -51.93 -0.26 1.11 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.93 5.85 -51.93 -0.30 0.62 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.35 4.37 -51.93 -0.23 1.13 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -28.62 289.51 -8.22 -36.84 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.64 Total: 1.54 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -0.31 Total: -26.47 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.55 Total: -36.42 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.62 -8.22 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.692 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds