Wall clock time and date at job start Mon Mar 30 2020 03:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00067 * 2 1 4 4 C 1.46892 * 110.99991 * 123.95924 * 2 1 3 5 5 C 1.52996 * 109.47551 * 66.04728 * 4 2 1 6 6 C 1.52993 * 109.47738 * 173.51059 * 5 4 2 7 7 H 1.09007 * 109.47060 * 311.02740 * 6 5 4 8 8 C 1.50694 * 109.47659 * 191.02567 * 6 5 4 9 9 H 1.08002 * 119.99956 * 355.15938 * 8 6 5 10 10 C 1.37882 * 120.00407 * 175.16066 * 8 6 5 11 11 N 1.31506 * 119.99614 * 357.41412 * 10 8 6 12 12 Si 1.86796 * 119.99812 * 177.41574 * 10 8 6 13 13 H 1.48501 * 109.46847 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47158 * 299.99717 * 12 10 8 15 15 H 1.48496 * 109.47686 * 60.00079 * 12 10 8 16 16 C 1.52997 * 109.47224 * 71.02166 * 6 5 4 17 17 C 1.54269 * 110.03002 * 50.57006 * 16 6 5 18 18 C 1.54968 * 104.16199 * 217.13327 * 17 16 6 19 19 C 1.54890 * 102.77419 * 37.88694 * 18 17 16 20 20 C 1.53873 * 110.03629 * 293.35091 * 16 6 5 21 21 H 1.09000 * 109.47290 * 296.04715 * 1 2 3 22 22 H 1.09004 * 109.47033 * 56.03870 * 1 2 3 23 23 H 1.09000 * 109.47168 * 176.04322 * 1 2 3 24 24 H 1.09001 * 109.47030 * 183.95019 * 3 2 1 25 25 H 1.08993 * 109.47466 * 303.95697 * 3 2 1 26 26 H 1.09001 * 109.46934 * 63.95642 * 3 2 1 27 27 H 1.08998 * 109.47224 * 306.04232 * 4 2 1 28 28 H 1.09006 * 109.47269 * 186.04797 * 4 2 1 29 29 H 1.09005 * 109.47115 * 53.50478 * 5 4 2 30 30 H 1.09004 * 109.46685 * 293.51116 * 5 4 2 31 31 H 0.96996 * 120.00552 * 356.54054 * 11 10 8 32 32 H 1.09009 * 110.01988 * 171.95928 * 16 6 5 33 33 H 1.08998 * 110.48937 * 335.78143 * 17 16 6 34 34 H 1.09000 * 110.48615 * 98.43097 * 17 16 6 35 35 H 1.08998 * 110.72293 * 279.57951 * 18 17 16 36 36 H 1.08992 * 110.92613 * 156.29646 * 18 17 16 37 37 H 1.08998 * 110.48817 * 203.40316 * 19 18 17 38 38 H 1.09000 * 110.59884 * 80.81447 * 19 18 17 39 39 H 1.08992 * 110.03432 * 238.56783 * 20 16 6 40 40 H 1.08999 * 110.02929 * 359.95632 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1374 5 6 1.6315 -2.2426 0.9702 6 6 2.3145 -3.0637 2.0656 7 1 3.3700 -2.7960 2.1156 8 6 2.1829 -4.5312 1.7495 9 1 1.5978 -4.8502 0.8996 10 6 2.8094 -5.4668 2.5453 11 7 3.5632 -5.0766 3.5498 12 14 2.5874 -7.2884 2.1966 13 1 3.3588 -8.0799 3.1886 14 1 1.1479 -7.6396 2.2955 15 1 3.0787 -7.5942 0.8290 16 6 1.6499 -2.7704 3.4121 17 6 0.1193 -2.9186 3.2893 18 6 -0.4444 -1.7923 4.1921 19 6 0.5433 -0.6258 3.9413 20 6 1.9196 -1.3134 3.8269 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5741 -0.8524 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5898 1.9164 -0.8523 26 1 1.7044 1.8723 0.9233 27 1 1.5611 -0.3874 2.0627 28 1 3.0797 -0.6611 1.1755 29 1 1.9662 -2.5909 -0.0070 30 1 0.5507 -2.3615 1.0476 31 1 3.7191 -4.1312 3.7006 32 1 2.0312 -3.4518 4.1728 33 1 -0.1964 -2.7732 2.2562 34 1 -0.1998 -3.8955 3.6528 35 1 -0.4286 -2.0933 5.2395 36 1 -1.4535 -1.5165 3.8861 37 1 0.5330 0.0699 4.7804 38 1 0.2975 -0.1077 3.0144 39 1 2.4309 -1.2876 4.7891 40 1 2.5247 -0.8154 3.0693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:00 Heat of formation + Delta-G solvation = -17.027499 kcal Electronic energy + Delta-G solvation = -17055.571495 eV Core-core repulsion = 14676.408494 eV Total energy + Delta-G solvation = -2379.163001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65758 -37.81409 -35.60937 -33.09835 -30.14179 -29.35701 -28.37365 -27.48179 -25.26707 -23.39835 -21.82137 -21.32899 -19.96860 -18.86527 -17.14196 -16.29393 -16.03166 -15.72101 -15.65300 -15.54625 -15.00032 -14.47337 -14.12709 -13.79430 -13.29898 -13.03967 -12.74326 -12.67058 -12.60132 -12.31062 -12.14290 -11.97349 -11.86289 -11.84444 -11.71896 -11.62124 -11.36200 -11.00041 -10.75679 -10.34299 -10.27608 -9.09619 -8.48963 -6.20858 1.52010 1.59241 1.77856 2.60031 3.12761 3.27273 3.85448 3.89747 3.98582 4.11364 4.30298 4.36209 4.50147 4.52526 4.62708 4.67476 4.74058 4.76638 4.81322 4.87875 4.90899 4.95335 4.99450 5.00000 5.06251 5.11657 5.15238 5.25693 5.28897 5.42674 5.52381 5.64260 5.83964 5.89012 6.14769 6.21552 6.24624 6.36649 6.76511 7.56800 8.87601 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.009151 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.264164 B = 3058.937931 C = 3516.109092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.569 5.569 3 C 0.025 3.975 4 C 0.037 3.963 5 C -0.086 4.086 6 C 0.040 3.960 7 H -0.018 1.018 8 C -0.595 4.595 9 H 0.038 0.962 10 C -0.030 4.030 11 N -0.939 5.939 12 Si 1.103 2.897 13 H -0.287 1.287 14 H -0.273 1.273 15 H -0.275 1.275 16 C -0.083 4.083 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.140 4.140 21 H 0.031 0.969 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.261 0.739 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 11.649 -2.320 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.293 5.293 3 C -0.123 4.123 4 C -0.089 4.089 5 C -0.124 4.124 6 C 0.021 3.979 7 H 0.000 1.000 8 C -0.633 4.633 9 H 0.056 0.944 10 C -0.228 4.228 11 N -0.578 5.578 12 Si 0.927 3.073 13 H -0.212 1.212 14 H -0.199 1.199 15 H -0.201 1.201 16 C -0.102 4.102 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.178 4.178 21 H 0.050 0.950 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.105 9.924 -2.218 12.406 hybrid contribution -0.079 1.421 0.241 1.444 sum -7.185 11.346 -1.977 13.574 Atomic orbital electron populations 1.22410 0.86834 1.02079 1.00994 1.61947 1.08831 1.14383 1.44139 1.22400 1.00589 0.88168 1.01108 1.22928 0.98843 0.94222 0.92956 1.21485 1.00163 0.93243 0.97490 1.18792 0.92695 0.94084 0.92305 1.00008 1.22304 1.33501 0.93308 1.14232 0.94402 1.26956 0.93270 1.09394 0.93202 1.70876 1.37996 1.18638 1.30273 0.83104 0.76915 0.71156 0.76157 1.21218 1.19886 1.20078 1.21699 0.95854 0.94524 0.98157 1.22367 0.94895 0.97316 0.99845 1.22496 0.98830 0.95018 0.99190 1.22390 0.93834 0.97267 1.01601 1.22734 0.98397 0.96220 1.00428 0.95046 0.90090 0.92368 0.91960 0.89993 0.95223 0.90221 0.93229 0.95084 0.91694 0.92843 0.94890 0.91318 0.94863 0.92158 0.90152 0.90471 0.91073 0.93675 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.32 127.69 1.19 1.82 16 2 N -0.57 -16.90 5.02 -948.88 -4.76 -21.66 16 3 C 0.03 0.59 9.57 127.69 1.22 1.81 16 4 C 0.04 1.28 3.38 86.30 0.29 1.57 16 5 C -0.09 -3.62 4.20 30.59 0.13 -3.49 16 6 C 0.04 2.01 1.28 -11.54 -0.01 1.99 16 7 H -0.02 -1.02 7.58 -2.38 -0.02 -1.03 16 8 C -0.60 -33.65 8.09 25.60 0.21 -33.44 16 9 H 0.04 2.15 7.75 -2.91 -0.02 2.12 16 10 C -0.03 -1.75 5.25 84.66 0.44 -1.30 16 11 N -0.94 -57.79 12.85 21.45 0.28 -57.51 16 12 Si 1.10 51.58 29.90 68.60 2.05 53.63 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 16 C -0.08 -3.74 2.32 -10.07 -0.02 -3.77 16 17 C -0.11 -4.24 5.79 31.70 0.18 -4.05 16 18 C -0.12 -3.58 6.91 31.91 0.22 -3.36 16 19 C -0.11 -3.26 6.38 31.67 0.20 -3.06 16 20 C -0.14 -5.12 5.59 31.32 0.17 -4.94 16 21 H 0.03 0.73 7.63 -2.39 -0.02 0.71 16 22 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 23 H 0.06 1.62 6.62 -2.39 -0.02 1.60 16 24 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 25 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 26 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 2.56 2.47 -2.39 -0.01 2.56 16 28 H 0.05 1.84 7.76 -2.38 -0.02 1.82 16 29 H 0.03 1.41 8.10 -2.38 -0.02 1.39 16 30 H 0.06 2.62 4.00 -2.39 -0.01 2.61 16 31 H 0.26 16.16 5.92 -92.71 -0.55 15.61 16 32 H 0.03 1.76 6.04 -2.38 -0.01 1.74 16 33 H 0.07 2.70 5.06 -2.39 -0.01 2.68 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.90 5.85 -2.39 -0.01 1.89 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 2.73 4.37 -2.39 -0.01 2.72 16 Total: -1.00 -63.84 289.51 3.01 -60.83 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.22 Total: 14.94 kcal Atomic # 6 Polarization: -54.45 SS G_CDS: 4.23 Total: -50.22 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -4.49 Total: -79.17 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -63.84 3.01 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.807 kcal (2) G-P(sol) polarization free energy of solvation -63.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds