Wall clock time and date at job start Mon Mar 30 2020 02:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 N 1.46900 * 109.47046 * 119.99836 * 2 1 3 5 5 C 1.46901 * 111.00309 * 305.34115 * 4 2 1 6 6 H 1.08997 * 109.46819 * 328.33518 * 5 4 2 7 7 C 1.52997 * 109.47105 * 88.33379 * 5 4 2 8 8 C 1.50699 * 109.47352 * 208.33626 * 5 4 2 9 9 H 1.08003 * 119.99946 * 354.64305 * 8 5 4 10 10 C 1.37865 * 120.00074 * 174.64496 * 8 5 4 11 11 N 1.31519 * 120.00089 * 359.97438 * 10 8 5 12 12 Si 1.86808 * 120.00179 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.46913 * 89.99962 * 12 10 8 14 14 H 1.48500 * 109.47029 * 210.00180 * 12 10 8 15 15 H 1.48500 * 109.46771 * 329.99943 * 12 10 8 16 16 C 1.46907 * 110.99953 * 69.29510 * 4 2 1 17 17 C 1.54889 * 110.75243 * 55.11010 * 16 4 2 18 18 C 1.54269 * 104.31048 * 156.32606 * 17 16 4 19 19 C 1.53873 * 106.59809 * 336.31848 * 18 17 16 20 20 C 1.54272 * 106.60029 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.47425 * 307.47914 * 1 2 3 22 22 H 1.09000 * 109.47039 * 67.47711 * 1 2 3 23 23 H 1.09001 * 109.47471 * 187.48116 * 1 2 3 24 24 H 1.08998 * 109.47452 * 240.00090 * 2 1 3 25 25 H 1.09001 * 109.47199 * 183.07528 * 3 2 1 26 26 H 1.08993 * 109.47234 * 303.07437 * 3 2 1 27 27 H 1.09005 * 109.47144 * 63.07742 * 3 2 1 28 28 H 1.09004 * 109.47143 * 67.69565 * 7 5 4 29 29 H 1.08992 * 109.47487 * 187.69288 * 7 5 4 30 30 H 1.09005 * 109.47450 * 307.69493 * 7 5 4 31 31 H 0.97001 * 119.99798 * 179.97438 * 11 10 8 32 32 H 1.08996 * 110.81638 * 291.77527 * 16 4 2 33 33 H 1.08999 * 110.48827 * 37.57834 * 17 16 4 34 34 H 1.09004 * 110.48387 * 275.06532 * 17 16 4 35 35 H 1.08998 * 110.03231 * 95.60647 * 18 17 16 36 36 H 1.09003 * 110.02846 * 217.03800 * 18 17 16 37 37 H 1.09002 * 110.02909 * 119.28505 * 19 18 17 38 38 H 1.08999 * 110.03586 * 240.67152 * 19 18 17 39 39 H 1.08990 * 110.49030 * 142.28341 * 20 19 18 40 40 H 1.08997 * 110.48297 * 264.79817 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4472 -0.1040 2.4177 6 1 1.2774 0.9612 2.2614 7 6 0.1183 -0.7904 2.7398 8 6 2.4036 -0.2970 3.5661 9 1 3.3021 -0.8803 3.4284 10 6 2.1317 0.2709 4.7926 11 7 1.0378 0.9815 4.9602 12 14 3.3169 0.0310 6.2165 13 1 4.3233 1.1231 6.2121 14 1 2.5645 0.0563 7.4965 15 1 4.0052 -1.2770 6.0726 16 6 1.7379 -2.1325 1.1279 17 6 2.3237 -2.7425 -0.1698 18 6 2.5058 -4.2383 0.1604 19 6 2.6193 -4.3398 1.6916 20 6 2.5016 -2.9021 2.2385 21 1 -0.3634 0.6253 0.8155 22 1 -0.3633 0.3937 -0.9493 23 1 -0.3634 -1.0189 0.1338 24 1 1.8933 -0.5138 -0.8900 25 1 3.1286 1.4430 -0.0551 26 1 1.6323 1.9720 -0.8611 27 1 1.7223 1.9402 0.9163 28 1 0.3044 -1.8247 3.0294 29 1 -0.3721 -0.2662 3.5599 30 1 -0.5242 -0.7696 1.8595 31 1 0.8463 1.3807 5.8233 32 1 0.6665 -2.3214 1.1941 33 1 3.2839 -2.2844 -0.4070 34 1 1.6269 -2.6168 -0.9986 35 1 1.6428 -4.8055 -0.1884 36 1 3.4151 -4.6159 -0.3073 37 1 1.8114 -4.9562 2.0858 38 1 3.5834 -4.7674 1.9670 39 1 1.9335 -2.8931 3.1686 40 1 3.4906 -2.4705 2.3924 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:43 Heat of formation + Delta-G solvation = -1.412881 kcal Electronic energy + Delta-G solvation = -17277.055592 eV Core-core repulsion = 14898.569691 eV Total energy + Delta-G solvation = -2378.485901 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.04995 -35.84149 -33.10700 -30.86085 -28.79995 -27.77858 -27.05145 -25.61434 -24.81920 -21.10182 -20.33465 -19.40892 -17.81453 -16.62861 -15.43993 -14.92994 -14.54038 -14.02825 -13.71325 -13.32281 -12.76729 -12.52231 -12.44483 -11.93599 -11.75605 -11.50952 -10.99346 -10.89355 -10.80579 -10.72470 -10.58400 -10.46782 -10.38230 -10.21772 -10.12583 -9.86105 -9.79197 -9.68865 -9.17491 -8.67581 -8.23365 -7.03094 -5.90873 -3.90385 3.36357 3.42896 3.46306 4.49350 4.92460 5.17443 5.23882 5.40550 5.44588 5.61315 5.78426 5.91336 5.98452 6.05055 6.10696 6.15606 6.20666 6.27044 6.32218 6.38959 6.42503 6.48568 6.53755 6.60261 6.77366 6.83383 6.88814 6.91404 6.94772 7.13133 7.16708 7.29032 7.56286 7.77421 7.99838 8.35663 8.51499 8.74528 9.15975 9.72815 11.17739 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.011638 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.100756 B = 2405.343104 C = 3160.493959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 C -0.141 4.141 4 N -0.519 5.519 5 C 0.209 3.791 6 H 0.044 0.956 7 C -0.179 4.179 8 C -0.486 4.486 9 H 0.065 0.935 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.889 3.111 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.275 1.275 16 C 0.088 3.912 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.101 4.101 21 H 0.066 0.934 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.257 0.743 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -5.646 -8.767 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.033 4.033 3 C -0.198 4.198 4 N -0.242 5.242 5 C 0.103 3.897 6 H 0.061 0.939 7 C -0.237 4.237 8 C -0.525 4.525 9 H 0.083 0.917 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.718 3.282 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.200 1.200 16 C -0.021 4.021 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.167 4.167 20 C -0.139 4.139 21 H 0.085 0.915 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.771 -5.477 -8.597 10.223 hybrid contribution -0.402 -0.193 0.892 0.997 sum 0.370 -5.670 -7.705 9.574 Atomic orbital electron populations 1.22735 0.98886 1.01522 1.01009 1.21625 0.91863 0.95311 0.94537 1.21836 1.01132 0.95639 1.01205 1.62593 1.58490 1.00765 1.02350 1.19330 0.90340 0.94395 0.85641 0.93859 1.22761 1.00202 1.00453 1.00334 1.21256 1.06461 1.30962 0.93781 0.91666 1.24924 0.95351 0.95628 0.98624 1.69933 1.25068 1.34999 1.23923 0.86639 0.81088 0.78475 0.82024 1.20937 1.21635 1.19984 1.22482 0.96878 0.89006 0.93698 1.22470 1.01025 0.94740 0.97630 1.22060 1.00459 0.96791 0.96510 1.22202 1.00630 0.98762 0.95086 1.22442 1.01740 0.91659 0.98033 0.91459 0.94125 0.92900 0.91652 0.92575 0.93892 0.91642 0.94660 0.91249 0.95639 0.93329 0.93770 0.91179 0.93029 0.92786 0.92610 0.92792 0.92594 0.91011 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 7.38 37.15 0.27 -2.88 16 2 C 0.08 1.37 2.73 -67.72 -0.18 1.18 16 3 C -0.14 -2.48 9.21 37.16 0.34 -2.13 16 4 N -0.52 -10.76 4.30 -209.66 -0.90 -11.66 16 5 C 0.21 5.05 1.50 -68.87 -0.10 4.95 16 6 H 0.04 1.16 5.43 -51.93 -0.28 0.88 16 7 C -0.18 -4.20 7.07 37.16 0.26 -3.94 16 8 C -0.49 -12.97 7.19 -34.45 -0.25 -13.22 16 9 H 0.07 1.76 5.93 -52.48 -0.31 1.45 16 10 C 0.05 1.50 5.33 -17.82 -0.10 1.41 16 11 N -0.90 -25.67 11.81 55.43 0.65 -25.01 16 12 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.09 1.65 1.51 -65.54 -0.10 1.55 16 17 C -0.12 -1.90 4.92 -25.07 -0.12 -2.02 16 18 C -0.12 -1.68 6.80 -25.61 -0.17 -1.86 16 19 C -0.13 -1.98 6.80 -25.61 -0.17 -2.15 16 20 C -0.10 -1.93 4.50 -24.89 -0.11 -2.04 16 21 H 0.07 1.29 6.10 -51.93 -0.32 0.97 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.91 5.67 -51.93 -0.29 0.62 16 24 H 0.07 1.09 6.44 -51.93 -0.33 0.75 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.31 6.12 -51.93 -0.32 0.99 16 28 H 0.03 0.82 5.49 -51.93 -0.29 0.53 16 29 H 0.07 1.82 6.70 -51.93 -0.35 1.47 16 30 H 0.02 0.53 3.97 -51.93 -0.21 0.33 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 0.87 5.00 -51.93 -0.26 0.61 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.75 7.76 -51.93 -0.40 0.35 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.52 6.40 -51.93 -0.33 1.19 16 40 H 0.08 1.57 6.84 -51.93 -0.36 1.22 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -27.24 283.19 -8.00 -35.24 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.56 Total: 1.82 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -0.43 Total: -21.15 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.25 Total: -36.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.24 -8.00 -35.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.822 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds