Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 N 1.46900 * 109.47046 * 119.99836 * 2 1 3 5 5 C 1.46901 * 111.00309 * 305.34115 * 4 2 1 6 6 H 1.08997 * 109.46819 * 328.33518 * 5 4 2 7 7 C 1.52997 * 109.47105 * 88.33379 * 5 4 2 8 8 C 1.50699 * 109.47352 * 208.33626 * 5 4 2 9 9 H 1.08003 * 119.99946 * 354.64305 * 8 5 4 10 10 C 1.37865 * 120.00074 * 174.64496 * 8 5 4 11 11 N 1.31519 * 120.00089 * 359.97438 * 10 8 5 12 12 Si 1.86808 * 120.00179 * 179.97438 * 10 8 5 13 13 H 1.48503 * 109.46913 * 89.99962 * 12 10 8 14 14 H 1.48500 * 109.47029 * 210.00180 * 12 10 8 15 15 H 1.48500 * 109.46771 * 329.99943 * 12 10 8 16 16 C 1.46907 * 110.99953 * 69.29510 * 4 2 1 17 17 C 1.54889 * 110.75243 * 55.11010 * 16 4 2 18 18 C 1.54269 * 104.31048 * 156.32606 * 17 16 4 19 19 C 1.53873 * 106.59809 * 336.31848 * 18 17 16 20 20 C 1.54272 * 106.60029 * 0.02562 * 19 18 17 21 21 H 1.09005 * 109.47425 * 307.47914 * 1 2 3 22 22 H 1.09000 * 109.47039 * 67.47711 * 1 2 3 23 23 H 1.09001 * 109.47471 * 187.48116 * 1 2 3 24 24 H 1.08998 * 109.47452 * 240.00090 * 2 1 3 25 25 H 1.09001 * 109.47199 * 183.07528 * 3 2 1 26 26 H 1.08993 * 109.47234 * 303.07437 * 3 2 1 27 27 H 1.09005 * 109.47144 * 63.07742 * 3 2 1 28 28 H 1.09004 * 109.47143 * 67.69565 * 7 5 4 29 29 H 1.08992 * 109.47487 * 187.69288 * 7 5 4 30 30 H 1.09005 * 109.47450 * 307.69493 * 7 5 4 31 31 H 0.97001 * 119.99798 * 179.97438 * 11 10 8 32 32 H 1.08996 * 110.81638 * 291.77527 * 16 4 2 33 33 H 1.08999 * 110.48827 * 37.57834 * 17 16 4 34 34 H 1.09004 * 110.48387 * 275.06532 * 17 16 4 35 35 H 1.08998 * 110.03231 * 95.60647 * 18 17 16 36 36 H 1.09003 * 110.02846 * 217.03800 * 18 17 16 37 37 H 1.09002 * 110.02909 * 119.28505 * 19 18 17 38 38 H 1.08999 * 110.03586 * 240.67152 * 19 18 17 39 39 H 1.08990 * 110.49030 * 142.28341 * 20 19 18 40 40 H 1.08997 * 110.48297 * 264.79817 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4472 -0.1040 2.4177 6 1 1.2774 0.9612 2.2614 7 6 0.1183 -0.7904 2.7398 8 6 2.4036 -0.2970 3.5661 9 1 3.3021 -0.8803 3.4284 10 6 2.1317 0.2709 4.7926 11 7 1.0378 0.9815 4.9602 12 14 3.3169 0.0310 6.2165 13 1 4.3233 1.1231 6.2121 14 1 2.5645 0.0563 7.4965 15 1 4.0052 -1.2770 6.0726 16 6 1.7379 -2.1325 1.1279 17 6 2.3237 -2.7425 -0.1698 18 6 2.5058 -4.2383 0.1604 19 6 2.6193 -4.3398 1.6916 20 6 2.5016 -2.9021 2.2385 21 1 -0.3634 0.6253 0.8155 22 1 -0.3633 0.3937 -0.9493 23 1 -0.3634 -1.0189 0.1338 24 1 1.8933 -0.5138 -0.8900 25 1 3.1286 1.4430 -0.0551 26 1 1.6323 1.9720 -0.8611 27 1 1.7223 1.9402 0.9163 28 1 0.3044 -1.8247 3.0294 29 1 -0.3721 -0.2662 3.5599 30 1 -0.5242 -0.7696 1.8595 31 1 0.8463 1.3807 5.8233 32 1 0.6665 -2.3214 1.1941 33 1 3.2839 -2.2844 -0.4070 34 1 1.6269 -2.6168 -0.9986 35 1 1.6428 -4.8055 -0.1884 36 1 3.4151 -4.6159 -0.3073 37 1 1.8114 -4.9562 2.0858 38 1 3.5834 -4.7674 1.9670 39 1 1.9335 -2.8931 3.1686 40 1 3.4906 -2.4705 2.3924 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -16.932213 kcal Electronic energy + Delta-G solvation = -17277.728560 eV Core-core repulsion = 14898.569691 eV Total energy + Delta-G solvation = -2379.158869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60257 -37.24020 -35.05448 -32.58601 -30.39704 -29.21555 -28.58052 -27.09240 -26.80173 -22.84370 -21.78692 -20.74564 -19.42389 -18.47875 -17.01522 -16.60718 -16.38802 -15.45121 -15.31615 -14.78411 -14.31729 -14.03815 -13.96207 -13.65447 -13.34704 -13.22389 -12.79191 -12.66075 -12.38339 -12.28606 -12.12492 -12.01516 -11.93331 -11.81704 -11.67824 -11.40086 -11.34023 -11.09817 -10.86594 -10.62776 -10.31729 -8.69442 -8.01924 -6.07303 1.41087 1.42351 1.51652 2.47098 3.27493 3.41876 3.85366 4.00082 4.11049 4.24726 4.36826 4.55686 4.63906 4.68224 4.76116 4.82603 4.86040 4.91285 4.93604 4.97239 5.02211 5.06341 5.11034 5.15562 5.21563 5.25277 5.31312 5.44738 5.50636 5.55737 5.58534 5.61376 5.70003 5.87190 5.90224 6.40412 6.76105 6.94048 7.06987 7.59759 9.04932 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.011638 C = 0.008857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.100756 B = 2405.343104 C = 3160.493959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 C -0.136 4.136 4 N -0.530 5.530 5 C 0.218 3.782 6 H 0.014 0.986 7 C -0.162 4.162 8 C -0.491 4.491 9 H 0.058 0.942 10 C 0.006 3.994 11 N -0.927 5.927 12 Si 0.945 3.055 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.269 1.269 16 C 0.084 3.916 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.102 4.102 21 H 0.039 0.961 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.255 0.745 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 -7.060 -10.707 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.037 4.037 3 C -0.193 4.193 4 N -0.253 5.253 5 C 0.111 3.889 6 H 0.032 0.968 7 C -0.221 4.221 8 C -0.530 4.530 9 H 0.076 0.924 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.772 3.228 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.194 1.194 16 C -0.025 4.025 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.161 4.161 20 C -0.140 4.140 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.267 -6.901 -10.552 12.672 hybrid contribution -0.550 0.261 1.454 1.576 sum 0.717 -6.639 -9.098 11.286 Atomic orbital electron populations 1.22610 0.98141 1.01087 1.01594 1.21779 0.92519 0.95371 0.94025 1.21795 1.01053 0.95635 1.00855 1.62491 1.58681 1.02111 1.02046 1.19010 0.90105 0.93012 0.86744 0.96771 1.22582 1.00133 0.99425 0.99980 1.21548 1.06514 1.30088 0.94818 0.92379 1.25614 0.96778 0.95727 1.00970 1.70061 1.26531 1.36058 1.24244 0.85748 0.79272 0.78495 0.79266 1.20642 1.21511 1.19410 1.22555 0.96519 0.87785 0.95599 1.22412 1.00902 0.95591 0.96137 1.22045 1.02328 0.95680 0.95057 1.22159 1.01639 0.95992 0.96357 1.22341 0.99800 0.94572 0.97266 0.94175 0.91071 0.92895 0.89128 0.92836 0.90783 0.94961 0.95077 0.94512 0.93389 0.93568 0.94586 0.91571 0.91198 0.90988 0.90612 0.91985 0.91507 0.94204 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 7.38 71.98 0.53 -5.21 16 2 C 0.07 2.46 2.73 44.91 0.12 2.58 16 3 C -0.14 -4.66 9.21 71.98 0.66 -4.00 16 4 N -0.53 -21.84 4.30 -817.23 -3.51 -25.35 16 5 C 0.22 10.86 1.50 44.17 0.07 10.92 16 6 H 0.01 0.80 5.43 -2.39 -0.01 0.79 16 7 C -0.16 -7.84 7.07 71.98 0.51 -7.34 16 8 C -0.49 -26.98 7.19 25.60 0.18 -26.79 16 9 H 0.06 3.22 5.93 -2.91 -0.02 3.20 16 10 C 0.01 0.34 5.33 84.65 0.45 0.80 16 11 N -0.93 -54.72 11.81 21.44 0.25 -54.46 16 12 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 C 0.08 3.05 1.51 46.32 0.07 3.12 16 17 C -0.11 -3.17 4.92 31.67 0.16 -3.02 16 18 C -0.11 -2.73 6.80 31.32 0.21 -2.52 16 19 C -0.12 -3.52 6.80 31.32 0.21 -3.31 16 20 C -0.10 -3.88 4.50 31.79 0.14 -3.73 16 21 H 0.04 1.52 6.10 -2.38 -0.01 1.51 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 23 H 0.05 1.71 5.67 -2.39 -0.01 1.70 16 24 H 0.09 2.70 6.44 -2.39 -0.02 2.68 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.31 6.12 -2.38 -0.01 1.29 16 28 H 0.03 1.48 5.49 -2.39 -0.01 1.46 16 29 H 0.04 1.99 6.70 -2.39 -0.02 1.97 16 30 H 0.05 2.05 3.97 -2.38 -0.01 2.04 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.04 1.38 5.00 -2.39 -0.01 1.37 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.73 7.76 -2.38 -0.02 1.72 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.73 6.40 -2.39 -0.02 1.71 16 40 H 0.05 2.19 6.84 -2.39 -0.02 2.17 16 Total: -1.00 -60.09 283.19 3.10 -57.00 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.01 Total: 14.24 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.32 Total: -38.49 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -3.26 Total: -79.82 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -60.09 3.10 -57.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.064 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds