Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86803 * 120.00079 * 2 1 4 4 H 1.48507 * 109.46865 * 270.00333 * 3 2 1 5 5 H 1.48505 * 109.46888 * 29.99935 * 3 2 1 6 6 H 1.48497 * 109.47120 * 150.00101 * 3 2 1 7 7 C 1.40598 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.38819 * 120.00175 * 359.97438 * 7 2 1 10 10 S 1.74944 * 124.74401 * 359.97438 * 9 7 2 11 11 C 1.75007 * 91.66148 * 180.02562 * 10 9 7 12 12 C 1.37415 * 110.96574 * 359.97438 * 11 10 9 13 13 C 1.39464 * 115.21445 * 0.02562 * 12 11 10 14 14 C 1.41798 * 117.09315 * 180.02562 * 13 12 11 15 15 O 1.21505 * 122.34994 * 180.02562 * 14 13 12 16 16 C 1.50162 * 115.29715 * 0.02562 * 14 13 12 17 17 S 1.78495 * 137.17535 * 180.31633 * 12 11 10 18 18 H 0.96994 * 120.00029 * 359.97438 * 1 2 3 19 19 H 1.08002 * 124.52246 * 179.97438 * 11 10 9 20 20 H 1.08994 * 110.65273 * 118.45891 * 16 14 13 21 21 H 1.09004 * 110.64270 * 241.37355 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4867 2.0464 -1.4002 5 1 1.4366 2.6527 0.7001 6 1 3.5368 1.4402 0.7000 7 6 2.0082 -1.2176 -0.0005 8 1 3.0882 -1.2176 -0.0001 9 6 1.3141 -2.4198 -0.0005 10 16 -0.4293 -2.5646 0.0007 11 6 -0.3351 -4.3121 0.0007 12 6 0.9726 -4.7340 -0.0009 13 6 1.9255 -3.7157 -0.0015 14 6 3.2885 -4.1066 -0.0036 15 8 4.1965 -3.2991 -0.0038 16 6 3.5310 -5.5885 -0.0056 17 16 1.8460 -6.2907 -0.0086 18 1 -0.4850 0.8400 0.0004 19 1 -1.1908 -4.9712 0.0017 20 1 4.0716 -5.8883 -0.9033 21 1 4.0765 -5.8898 0.8887 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263483.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -49.713851 kcal Electronic energy + Delta-G solvation = -11075.268427 eV Core-core repulsion = 8939.142741 eV Total energy + Delta-G solvation = -2136.125686 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 225.986 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.14369 -37.18341 -36.16188 -31.87946 -31.05618 -27.23918 -24.81150 -22.17487 -20.49362 -19.27151 -17.71457 -17.16458 -16.75963 -16.23741 -15.82482 -15.05066 -14.33267 -14.08661 -14.00346 -13.82593 -13.39649 -13.32502 -12.88636 -12.44976 -12.07963 -11.62330 -11.47246 -11.36627 -10.18711 -10.13525 -9.33309 -9.20394 -8.27977 -6.92191 0.35759 0.57283 0.86220 1.16920 1.28794 1.45968 1.48323 1.49819 2.01402 2.23087 2.24339 2.85294 3.48860 4.22618 4.26961 4.57594 4.63516 5.01326 5.21469 5.34038 5.62020 5.86985 6.06902 6.19565 7.03376 7.61735 Molecular weight = 225.99amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.011259 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.087199 B = 2486.282736 C = 3217.151329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.014 3.986 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.241 1.241 6 H -0.261 1.261 7 C -0.333 4.333 8 H 0.104 0.896 9 C 0.028 3.972 10 S 0.181 5.819 11 C -0.364 4.364 12 C -0.027 4.027 13 C -0.464 4.464 14 C 0.389 3.611 15 O -0.549 6.549 16 C -0.125 4.125 17 S -0.128 6.128 18 H 0.328 0.672 19 H 0.150 0.850 20 H 0.141 0.859 21 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 0.667 -0.011 0.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.212 4.212 3 Si 0.830 3.170 4 H -0.174 1.174 5 H -0.164 1.164 6 H -0.185 1.185 7 C -0.368 4.368 8 H 0.122 0.878 9 C -0.095 4.095 10 S 0.439 5.561 11 C -0.505 4.505 12 C -0.149 4.149 13 C -0.473 4.473 14 C 0.281 3.719 15 O -0.440 6.440 16 C -0.273 4.273 17 S 0.109 5.891 18 H 0.143 0.857 19 H 0.168 0.832 20 H 0.159 0.841 21 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.770 0.751 -0.014 1.923 hybrid contribution 1.615 0.418 0.002 1.669 sum -0.155 1.169 -0.012 1.180 Atomic orbital electron populations 1.68548 1.09145 1.34406 1.25148 1.27577 0.96076 1.06140 0.91403 0.84681 0.78723 0.72819 0.80778 1.17365 1.16412 1.18517 1.20126 0.97315 0.89940 1.29390 0.87847 1.22726 0.97373 0.94979 0.94432 1.84003 1.01043 0.94101 1.76951 1.25698 0.96475 1.02835 1.25444 1.21659 0.95439 0.95110 1.02670 1.19393 0.95123 0.93090 1.39667 1.20073 0.87777 0.89876 0.74173 1.90407 1.48805 1.57055 1.47740 1.24145 0.97207 0.96681 1.09289 1.85023 1.01516 1.08356 1.94229 0.85704 0.83187 0.84110 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -31.61 10.54 21.94 0.23 -31.38 14 2 C 0.01 0.59 5.51 85.46 0.47 1.06 14 3 Si 1.01 32.34 29.57 68.60 2.03 34.37 14 4 H -0.25 -7.65 7.11 99.48 0.71 -6.94 14 5 H -0.24 -6.70 7.11 99.48 0.71 -6.00 14 6 H -0.26 -8.80 7.11 99.48 0.71 -8.09 14 7 C -0.33 -17.10 9.05 22.98 0.21 -16.89 14 8 H 0.10 5.56 6.51 -2.91 -0.02 5.55 14 9 C 0.03 1.52 6.25 23.68 0.15 1.67 14 10 S 0.18 8.59 20.03 -56.49 -1.13 7.46 14 11 C -0.36 -17.06 11.26 67.63 0.76 -16.30 14 12 C -0.03 -1.31 6.91 22.37 0.15 -1.15 14 13 C -0.46 -24.65 6.00 -20.84 -0.13 -24.77 14 14 C 0.39 19.42 7.14 26.40 0.19 19.60 14 15 O -0.55 -30.05 16.39 -3.73 -0.06 -30.11 14 16 C -0.12 -4.72 7.34 71.07 0.52 -4.20 14 17 S -0.13 -5.09 23.28 -56.49 -1.32 -6.41 14 18 H 0.33 11.64 8.29 -92.71 -0.77 10.87 14 19 H 0.15 6.25 8.06 -2.91 -0.02 6.22 14 20 H 0.14 4.57 8.14 -2.39 -0.02 4.55 14 21 H 0.14 4.58 8.14 -2.39 -0.02 4.56 14 Total: -1.00 -59.68 219.72 3.35 -56.33 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.27 Total: 10.72 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 2.33 Total: -40.98 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.23 Total: -31.38 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.45 Total: 1.05 kcal Total: -59.68 3.35 -56.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263483.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.617 kcal (2) G-P(sol) polarization free energy of solvation -59.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds