Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86811 * 119.99589 * 2 1 4 4 H 1.48504 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47035 * 300.00470 * 3 2 1 6 6 H 1.48499 * 109.46660 * 60.00654 * 3 2 1 7 7 C 1.39047 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36869 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99664 * 180.02562 * 9 7 2 11 11 O 1.21583 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.47732 * 119.99709 * 180.02562 * 10 9 7 13 13 C 1.39638 * 120.55879 * 359.97438 * 12 10 9 14 14 N 1.31647 * 120.57924 * 180.02562 * 13 12 10 15 15 C 1.31954 * 121.90427 * 359.97438 * 14 13 12 16 16 C 1.38438 * 121.07806 * 359.97438 * 15 14 13 17 17 Cl 1.73603 * 120.36014 * 179.97438 * 16 15 14 18 18 C 1.38495 * 119.28406 * 0.02562 * 16 15 14 19 19 H 0.97000 * 120.00680 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99997 * 0.02562 * 9 7 2 21 21 H 1.07996 * 119.70616 * 0.04708 * 13 12 10 22 22 H 1.07998 * 119.46011 * 180.02562 * 15 14 13 23 23 H 1.08000 * 120.86572 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6179 0.0000 4 1 3.7075 1.3465 -0.0006 5 1 1.8886 2.3966 -1.2124 6 1 1.8887 2.3964 1.2126 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3246 -2.3895 -0.0005 10 6 1.9986 -3.5567 -0.0005 11 8 3.2144 -3.5566 -0.0001 12 6 1.2600 -4.8361 -0.0011 13 6 -0.1363 -4.8498 -0.0011 14 7 -0.7949 -5.9896 -0.0011 15 6 -0.1739 -7.1539 -0.0016 16 6 1.2086 -7.2264 -0.0027 17 17 2.0065 -8.7682 -0.0027 18 6 1.9484 -6.0555 -0.0027 19 1 -0.4851 0.8400 0.0004 20 1 0.3546 -2.3895 -0.0005 21 1 -0.6807 -3.9170 -0.0015 22 1 -0.7535 -8.0651 -0.0020 23 1 3.0280 -6.0823 -0.0031 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306255537.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -14.010755 kcal Electronic energy + Delta-G solvation = -12624.720792 eV Core-core repulsion = 10077.639482 eV Total energy + Delta-G solvation = -2547.081310 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.09736 -37.94888 -36.54886 -34.31077 -32.11419 -31.81874 -30.61720 -25.73649 -23.68439 -23.23453 -19.94184 -18.44111 -17.22750 -16.55402 -16.02319 -14.95089 -14.71623 -14.36250 -13.98464 -13.28177 -13.05529 -12.79703 -12.32206 -11.94161 -11.78525 -11.28179 -11.17760 -10.52042 -10.44410 -9.84954 -9.63696 -9.48562 -8.79022 -8.63334 -8.26412 -6.73319 -4.04147 0.87442 1.25587 2.06384 3.03288 3.14334 3.21338 3.49177 3.95343 4.25683 4.50801 4.61345 4.88420 5.11295 5.12244 5.39270 5.44982 5.84024 6.14020 6.38228 6.61588 7.27155 7.77318 7.95429 8.30503 8.88215 9.20792 9.76819 10.42593 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.061824 B = 0.006090 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.789290 B = 4596.775889 C = 5039.723228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.292 4.292 8 H 0.112 0.888 9 N -0.533 5.533 10 C 0.461 3.539 11 O -0.594 6.594 12 C -0.128 4.128 13 C 0.112 3.888 14 N -0.469 5.469 15 C 0.101 3.899 16 C -0.092 4.092 17 Cl -0.065 7.065 18 C -0.031 4.031 19 H 0.279 0.721 20 H 0.394 0.606 21 H 0.166 0.834 22 H 0.161 0.839 23 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 -9.920 -0.005 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.422 4.422 8 H 0.130 0.870 9 N -0.166 5.166 10 C 0.249 3.751 11 O -0.481 6.481 12 C -0.134 4.134 13 C -0.047 4.047 14 N -0.177 5.177 15 C -0.057 4.057 16 C -0.120 4.120 17 Cl -0.036 7.036 18 C -0.059 4.059 19 H 0.089 0.911 20 H 0.229 0.771 21 H 0.183 0.817 22 H 0.178 0.822 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.671 -9.804 -0.005 9.945 hybrid contribution 0.714 0.640 0.000 0.958 sum -0.957 -9.164 -0.005 9.214 Atomic orbital electron populations 1.69582 1.06251 1.29167 1.46884 1.25472 0.95756 1.00400 0.96364 0.85663 0.79819 0.80094 0.78059 1.18815 1.20330 1.20326 1.19968 0.93965 0.81877 1.46361 0.87005 1.41935 1.09552 1.04799 1.60317 1.17360 0.87439 0.82727 0.87600 1.90621 1.12919 1.86593 1.57986 1.21394 0.94653 0.95666 1.01707 1.23187 0.90947 0.96674 0.93874 1.67753 1.39840 0.97875 1.12211 1.22740 0.89651 0.96788 0.96530 1.21959 0.94189 0.87557 1.08342 1.98356 1.80208 1.27978 1.97057 1.21573 1.01722 0.89208 0.93386 0.91092 0.77076 0.81664 0.82164 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.32 13.05 55.50 0.72 -21.60 14 2 C 0.02 0.62 5.50 -17.45 -0.10 0.53 14 3 Si 0.94 19.63 29.55 -169.99 -5.02 14.60 14 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 14 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 14 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 14 7 C -0.29 -7.72 9.68 -15.00 -0.15 -7.86 14 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 14 9 N -0.53 -13.04 5.23 -11.87 -0.06 -13.10 14 10 C 0.46 10.95 7.73 -12.38 -0.10 10.85 14 11 O -0.59 -16.02 15.99 5.29 0.08 -15.94 14 12 C -0.13 -2.48 5.89 -104.82 -0.62 -3.10 14 13 C 0.11 1.96 10.72 -17.11 -0.18 1.77 14 14 N -0.47 -7.63 10.34 -12.86 -0.13 -7.76 14 15 C 0.10 1.44 10.97 -17.43 -0.19 1.25 14 16 C -0.09 -1.35 6.34 -39.41 -0.25 -1.60 14 17 Cl -0.06 -0.81 28.98 -51.86 -1.50 -2.31 14 18 C -0.03 -0.54 9.52 -38.82 -0.37 -0.91 14 19 H 0.28 6.61 8.31 -40.82 -0.34 6.28 14 20 H 0.39 9.03 5.96 -40.82 -0.24 8.79 14 21 H 0.17 2.74 6.42 -52.49 -0.34 2.41 14 22 H 0.16 1.76 8.06 -52.49 -0.42 1.34 14 23 H 0.15 2.65 7.74 -52.49 -0.41 2.24 14 LS Contribution 234.45 15.07 3.53 3.53 Total: -1.00 -28.40 234.45 -5.25 -33.65 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -0.92 Total: 7.98 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.95 Total: 0.94 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.53 Total: -42.46 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.08 Total: -15.94 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.40 -5.25 -33.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306255537.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.641 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds