Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86811 * 119.99589 * 2 1 4 4 H 1.48504 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47035 * 300.00470 * 3 2 1 6 6 H 1.48499 * 109.46660 * 60.00654 * 3 2 1 7 7 C 1.39047 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36869 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99664 * 180.02562 * 9 7 2 11 11 O 1.21583 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.47732 * 119.99709 * 180.02562 * 10 9 7 13 13 C 1.39638 * 120.55879 * 359.97438 * 12 10 9 14 14 N 1.31647 * 120.57924 * 180.02562 * 13 12 10 15 15 C 1.31954 * 121.90427 * 359.97438 * 14 13 12 16 16 C 1.38438 * 121.07806 * 359.97438 * 15 14 13 17 17 Cl 1.73603 * 120.36014 * 179.97438 * 16 15 14 18 18 C 1.38495 * 119.28406 * 0.02562 * 16 15 14 19 19 H 0.97000 * 120.00680 * 359.97438 * 1 2 3 20 20 H 0.96996 * 119.99997 * 0.02562 * 9 7 2 21 21 H 1.07996 * 119.70616 * 0.04708 * 13 12 10 22 22 H 1.07998 * 119.46011 * 180.02562 * 15 14 13 23 23 H 1.08000 * 120.86572 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6179 0.0000 4 1 3.7075 1.3465 -0.0006 5 1 1.8886 2.3966 -1.2124 6 1 1.8887 2.3964 1.2126 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3246 -2.3895 -0.0005 10 6 1.9986 -3.5567 -0.0005 11 8 3.2144 -3.5566 -0.0001 12 6 1.2600 -4.8361 -0.0011 13 6 -0.1363 -4.8498 -0.0011 14 7 -0.7949 -5.9896 -0.0011 15 6 -0.1739 -7.1539 -0.0016 16 6 1.2086 -7.2264 -0.0027 17 17 2.0065 -8.7682 -0.0027 18 6 1.9484 -6.0555 -0.0027 19 1 -0.4851 0.8400 0.0004 20 1 0.3546 -2.3895 -0.0005 21 1 -0.6807 -3.9170 -0.0015 22 1 -0.7535 -8.0651 -0.0020 23 1 3.0280 -6.0823 -0.0031 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306255537.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -33.145818 kcal Electronic energy + Delta-G solvation = -12625.550550 eV Core-core repulsion = 10077.639482 eV Total energy + Delta-G solvation = -2547.911069 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.54487 -39.73195 -37.69591 -36.22648 -33.71222 -33.46078 -32.08952 -27.52707 -25.23205 -24.61227 -21.66114 -20.30385 -18.79175 -17.99719 -17.40903 -16.72288 -16.22395 -15.92403 -15.74807 -14.92503 -14.69777 -14.28611 -13.66448 -13.56609 -13.11156 -12.97693 -12.51518 -12.26630 -12.11193 -11.66691 -11.13480 -10.92668 -10.43264 -10.20815 -10.05592 -8.61219 -6.05467 -0.48257 -0.10305 0.87581 1.37739 1.43098 1.57413 1.92723 2.23621 2.64870 2.89908 3.20011 3.26401 3.61541 3.71825 3.97318 4.02608 4.37273 4.75877 4.93620 5.27265 5.31556 5.84584 6.40541 6.62797 6.95581 7.32509 7.88662 8.55436 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.061824 B = 0.006090 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.789290 B = 4596.775889 C = 5039.723228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.006 4.006 3 Si 1.001 2.999 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.336 4.336 8 H 0.088 0.912 9 N -0.542 5.542 10 C 0.464 3.536 11 O -0.633 6.633 12 C -0.153 4.153 13 C 0.123 3.877 14 N -0.475 5.475 15 C 0.126 3.874 16 C -0.088 4.088 17 Cl -0.035 7.035 18 C -0.030 4.030 19 H 0.285 0.715 20 H 0.399 0.601 21 H 0.169 0.831 22 H 0.204 0.796 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -11.430 -0.006 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.823 3.177 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.175 5.175 10 C 0.253 3.747 11 O -0.522 6.522 12 C -0.159 4.159 13 C -0.035 4.035 14 N -0.183 5.183 15 C -0.033 4.033 16 C -0.116 4.116 17 Cl -0.007 7.007 18 C -0.058 4.058 19 H 0.095 0.905 20 H 0.235 0.765 21 H 0.186 0.814 22 H 0.221 0.779 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.645 -11.334 -0.005 11.639 hybrid contribution 0.983 0.769 0.000 1.248 sum -1.662 -10.565 -0.006 10.695 Atomic orbital electron populations 1.69626 1.07059 1.30235 1.47277 1.26223 0.96610 1.02810 0.95203 0.84755 0.78088 0.76209 0.78604 1.19510 1.19259 1.19250 1.19873 0.93265 0.83433 1.49911 0.89407 1.41891 1.09689 1.04686 1.61273 1.18015 0.87207 0.83955 0.85544 1.90574 1.14877 1.87585 1.59179 1.21023 0.95364 0.94151 1.05376 1.23178 0.89987 0.97578 0.92748 1.67885 1.39640 0.98025 1.12770 1.23474 0.89716 0.97439 0.92636 1.21957 0.94465 0.87939 1.07285 1.98376 1.79839 1.25623 1.96829 1.21617 1.01724 0.89602 0.92819 0.90481 0.76477 0.81405 0.77950 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.21 13.05 21.68 0.28 -45.92 14 2 C -0.01 -0.31 5.50 84.96 0.47 0.16 14 3 Si 1.00 40.64 29.55 68.60 2.03 42.67 14 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 14 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 14 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 14 7 C -0.34 -18.44 9.68 84.10 0.81 -17.63 14 8 H 0.09 5.13 7.15 -2.91 -0.02 5.11 14 9 N -0.54 -27.50 5.23 -309.73 -1.62 -29.12 14 10 C 0.46 22.78 7.73 86.75 0.67 23.45 14 11 O -0.63 -35.52 15.99 -3.98 -0.06 -35.58 14 12 C -0.15 -5.93 5.89 -20.00 -0.12 -6.04 14 13 C 0.12 4.17 10.72 85.06 0.91 5.08 14 14 N -0.47 -14.14 10.34 -194.61 -2.01 -16.16 14 15 C 0.13 3.08 10.97 84.72 0.93 4.01 14 16 C -0.09 -2.32 6.34 22.38 0.14 -2.18 14 17 Cl -0.04 -0.77 28.98 -2.72 -0.08 -0.85 14 18 C -0.03 -1.01 9.52 22.77 0.22 -0.79 14 19 H 0.29 13.48 8.31 -92.71 -0.77 12.71 14 20 H 0.40 18.90 5.96 -92.71 -0.55 18.34 14 21 H 0.17 5.53 6.42 -2.91 -0.02 5.51 14 22 H 0.20 3.29 8.06 -2.91 -0.02 3.27 14 23 H 0.15 5.06 7.74 -2.91 -0.02 5.04 14 Total: -1.00 -61.95 234.45 3.28 -58.67 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.71 Total: 20.23 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 4.03 Total: 6.06 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -3.35 Total: -91.20 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.06 Total: -35.58 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -61.95 3.28 -58.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306255537.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.521 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds