Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48502 * 109.47166 * 270.00219 * 3 2 1 5 5 H 1.48505 * 109.47497 * 30.00143 * 3 2 1 6 6 H 1.48498 * 109.47494 * 150.00341 * 3 2 1 7 7 C 1.40151 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.46126 * 119.99904 * 359.97438 * 7 2 1 10 10 O 1.21636 * 119.99900 * 0.02562 * 9 7 2 11 11 O 1.34958 * 120.00046 * 179.97438 * 9 7 2 12 12 C 1.35865 * 118.00041 * 175.08592 * 11 9 7 13 13 C 1.38812 * 120.04512 * 256.66166 * 12 11 9 14 14 C 1.38110 * 119.94616 * 179.74428 * 13 12 11 15 15 C 1.38404 * 120.04877 * 0.52897 * 14 13 12 16 16 Cl 1.73597 * 119.94944 * 179.70164 * 15 14 13 17 17 C 1.38404 * 120.09547 * 359.72078 * 15 14 13 18 18 C 1.38105 * 120.04931 * 0.02562 * 17 15 14 19 19 H 0.96999 * 119.99484 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.02610 * 359.97438 * 13 12 11 21 21 H 1.08002 * 119.97150 * 180.25321 * 14 13 12 22 22 H 1.07997 * 119.97178 * 179.97438 * 17 15 14 23 23 H 1.08002 * 120.02142 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4402 0.6999 7 6 2.0071 -1.2137 -0.0005 8 1 3.0871 -1.2137 -0.0010 9 6 1.2765 -2.4792 -0.0005 10 8 0.0601 -2.4792 -0.0005 11 8 1.9513 -3.6480 -0.0016 12 6 1.2352 -4.7980 0.1012 13 6 1.1912 -5.4839 1.3072 14 6 0.4583 -6.6499 1.4109 15 6 -0.2229 -7.1405 0.3105 16 17 -1.1370 -8.6105 0.4416 17 6 -0.1761 -6.4609 -0.8943 18 6 0.5512 -5.2918 -1.0010 19 1 -0.4849 0.8401 0.0004 20 1 1.7266 -5.1040 2.1648 21 1 0.4205 -7.1817 2.3502 22 1 -0.7081 -6.8457 -1.7518 23 1 0.5877 -4.7621 -1.9415 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306468169.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = -71.666433 kcal Electronic energy + Delta-G solvation = -12710.138401 eV Core-core repulsion = 10128.264202 eV Total energy + Delta-G solvation = -2581.874199 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.71749 -37.74801 -36.14100 -34.85008 -32.77240 -30.78588 -29.41882 -26.81075 -22.83880 -22.54183 -20.48146 -17.63802 -16.97272 -16.14385 -15.65407 -15.41932 -14.32329 -14.04694 -13.29185 -13.17684 -13.06593 -12.65507 -11.97150 -11.50284 -11.39879 -11.17019 -11.11093 -10.67244 -10.62393 -10.38750 -9.62614 -9.08775 -8.76152 -8.48494 -7.92885 -6.60093 -5.07746 1.44010 1.60785 2.33833 2.99028 3.05694 3.11065 3.72403 3.95533 4.10217 4.68658 5.09417 5.13886 5.32527 5.62128 5.73903 5.87758 6.22502 6.35120 6.49949 6.85776 6.91645 7.12790 7.75327 8.07323 8.54360 8.63097 10.11484 10.34476 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.079771 B = 0.005741 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.921340 B = 4876.186228 C = 4969.775847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.079 3.921 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.086 0.914 9 C 0.479 3.521 10 O -0.545 6.545 11 O -0.336 6.336 12 C 0.141 3.859 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.057 4.057 16 Cl -0.086 7.086 17 C -0.096 4.096 18 C -0.121 4.121 19 H 0.278 0.722 20 H 0.135 0.865 21 H 0.132 0.868 22 H 0.131 0.869 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 -8.913 0.551 9.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.143 4.143 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.104 0.896 9 C 0.339 3.661 10 O -0.437 6.437 11 O -0.256 6.256 12 C 0.098 3.902 13 C -0.146 4.146 14 C -0.116 4.116 15 C -0.083 4.083 16 Cl -0.058 7.058 17 C -0.114 4.114 18 C -0.140 4.140 19 H 0.088 0.912 20 H 0.153 0.847 21 H 0.150 0.850 22 H 0.149 0.851 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.650 -8.956 0.552 8.997 hybrid contribution 0.120 0.573 -0.019 0.586 sum 0.770 -8.384 0.533 8.436 Atomic orbital electron populations 1.69995 1.07334 1.28621 1.32394 1.25894 0.94984 1.00914 0.92468 0.85988 0.79995 0.79430 0.79307 1.19210 1.20008 1.18320 1.20411 0.94431 0.85678 1.52770 0.89611 1.21598 0.86872 0.80789 0.76831 1.90722 1.14545 1.84909 1.53524 1.84690 1.41049 1.13146 1.86727 1.18772 0.91817 0.87353 0.92229 1.21205 1.00312 0.95904 0.97194 1.20784 0.97003 0.96233 0.97566 1.20771 1.00660 0.90733 0.96144 1.98326 1.73699 1.35384 1.98375 1.20814 0.99415 0.94856 0.96344 1.21378 0.97060 0.95899 0.99673 0.91158 0.84727 0.85004 0.85098 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.42 11.83 55.56 0.66 -20.76 14 2 C 0.08 2.09 5.50 -17.34 -0.10 1.99 14 3 Si 0.93 18.98 29.56 -169.99 -5.02 13.95 14 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 14 6 H -0.26 -5.12 7.11 56.52 0.40 -4.71 14 7 C -0.50 -13.87 9.66 -35.70 -0.34 -14.22 14 8 H 0.09 2.19 7.85 -52.49 -0.41 1.78 14 9 C 0.48 13.76 7.79 33.89 0.26 14.02 14 10 O -0.54 -17.13 14.66 -19.37 -0.28 -17.41 14 11 O -0.34 -8.48 9.97 -25.29 -0.25 -8.73 14 12 C 0.14 3.09 5.22 -39.16 -0.20 2.88 14 13 C -0.13 -2.37 9.99 -39.42 -0.39 -2.77 14 14 C -0.10 -1.56 9.82 -39.57 -0.39 -1.94 14 15 C -0.06 -0.91 6.32 -39.46 -0.25 -1.16 14 16 Cl -0.09 -1.18 28.95 -51.86 -1.50 -2.68 14 17 C -0.10 -1.59 9.82 -39.57 -0.39 -1.98 14 18 C -0.12 -2.39 9.64 -39.42 -0.38 -2.77 14 19 H 0.28 7.02 8.29 -40.82 -0.34 6.69 14 20 H 0.13 2.30 8.06 -52.49 -0.42 1.88 14 21 H 0.13 1.72 8.06 -52.49 -0.42 1.30 14 22 H 0.13 1.83 8.06 -52.49 -0.42 1.41 14 23 H 0.13 2.57 8.06 -52.49 -0.42 2.15 14 LS Contribution 238.42 15.07 3.59 3.59 Total: -1.00 -31.21 238.42 -6.23 -37.44 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -1.24 Total: 0.55 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.18 Total: -5.95 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.66 Total: -20.76 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.54 Total: -26.15 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.21 -6.23 -37.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306468169.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.229 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds